Wall clock time and date at job start Tue Mar 31 2020 09:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 120.00314 * 2 1 4 4 C 1.50700 * 109.46871 * 269.99966 * 3 2 1 5 5 H 1.08002 * 120.00269 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99852 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00228 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99836 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46931 * 59.99893 * 8 6 4 10 10 H 1.48498 * 109.47075 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47232 * 300.00039 * 8 6 4 12 12 C 1.34781 * 120.00110 * 179.97438 * 2 1 3 13 13 O 1.21277 * 120.00177 * 186.29545 * 12 2 1 14 14 C 1.50706 * 119.99551 * 6.30226 * 12 2 1 15 15 C 1.53006 * 109.46764 * 289.82506 * 14 12 2 16 16 C 1.53002 * 109.46776 * 169.82652 * 14 12 2 17 17 N 1.46492 * 109.47293 * 49.82367 * 14 12 2 18 18 C 1.34778 * 120.00088 * 183.76369 * 17 14 12 19 19 O 1.21561 * 119.99838 * 0.02562 * 18 17 14 20 20 C 1.47851 * 120.00377 * 180.02562 * 18 17 14 21 21 C 1.39577 * 120.14367 * 179.97438 * 20 18 17 22 22 C 1.37956 * 119.84843 * 179.97438 * 21 20 18 23 23 C 1.38356 * 120.14692 * 359.97438 * 22 21 20 24 24 C 1.38356 * 120.29274 * 0.04316 * 23 22 21 25 25 C 1.37957 * 120.14447 * 359.95657 * 24 23 22 26 26 H 1.09002 * 109.46899 * 264.69699 * 1 2 3 27 27 H 1.08994 * 109.46702 * 24.69574 * 1 2 3 28 28 H 1.09001 * 109.47052 * 144.69621 * 1 2 3 29 29 H 1.09006 * 109.46942 * 29.99265 * 3 2 1 30 30 H 1.08991 * 109.47596 * 149.99728 * 3 2 1 31 31 H 0.96999 * 120.00528 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.46797 * 180.02562 * 15 14 12 33 33 H 1.09004 * 109.46931 * 300.00072 * 15 14 12 34 34 H 1.08992 * 109.46961 * 60.00243 * 15 14 12 35 35 H 1.08994 * 109.47458 * 299.99626 * 16 14 12 36 36 H 1.09002 * 109.47009 * 59.99877 * 16 14 12 37 37 H 1.08999 * 109.46744 * 179.97438 * 16 14 12 38 38 H 0.96995 * 120.00360 * 3.76814 * 17 14 12 39 39 H 1.08000 * 120.07155 * 359.70666 * 21 20 18 40 40 H 1.08005 * 119.92484 * 179.97438 * 22 21 20 41 41 H 1.08004 * 119.85177 * 180.02562 * 23 22 21 42 42 H 1.08007 * 119.92956 * 179.97438 * 24 23 22 43 43 H 1.08006 * 120.06928 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0982 1.0956 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.5526 3.6184 -0.6733 8 14 3.4381 3.4166 -3.4340 9 1 2.1408 3.5933 -4.1347 10 1 4.1795 4.7033 -3.4341 11 1 4.2415 2.3818 -4.1334 12 6 2.1390 -1.1672 0.0005 13 8 3.3463 -1.1704 0.1157 14 6 1.3922 -2.4685 -0.1422 15 6 0.5881 -2.7372 1.1315 16 6 2.3896 -3.6070 -0.3655 17 7 0.4812 -2.3858 -1.2864 18 6 -0.3491 -3.4109 -1.5622 19 8 -0.3424 -4.4040 -0.8611 20 6 -1.2681 -3.3278 -2.7174 21 6 -2.1289 -4.3879 -3.0060 22 6 -2.9843 -4.3037 -4.0851 23 6 -2.9905 -3.1713 -4.8800 24 6 -2.1395 -2.1171 -4.5996 25 6 -1.2792 -2.1885 -3.5236 26 1 -0.3633 -0.0950 1.0233 27 1 -0.3632 0.9336 -0.4293 28 1 -0.3633 -0.8387 -0.5939 29 1 1.6085 2.0284 0.5138 30 1 3.1499 1.1384 0.5138 31 1 4.0289 4.4447 -0.8505 32 1 0.0483 -3.6786 1.0285 33 1 1.2660 -2.7987 1.9829 34 1 -0.1224 -1.9262 1.2905 35 1 2.9625 -3.4155 -1.2728 36 1 3.0674 -3.6684 0.4860 37 1 1.8495 -4.5482 -0.4682 38 1 0.4757 -1.5933 -1.8457 39 1 -2.1222 -5.2740 -2.3885 40 1 -3.6506 -5.1235 -4.3097 41 1 -3.6624 -3.1102 -5.7234 42 1 -2.1490 -1.2361 -5.2244 43 1 -0.6151 -1.3650 -3.3060 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359035000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:59 Heat of formation + Delta-G solvation = -27.660741 kcal Electronic energy + Delta-G solvation = -25576.117936 eV Core-core repulsion = 22008.110464 eV Total energy + Delta-G solvation = -3568.007472 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87643 -39.38833 -38.18422 -35.40484 -34.99691 -32.61883 -32.43850 -31.13676 -30.31903 -28.12844 -26.89413 -26.07530 -24.56668 -23.61360 -22.72507 -21.62668 -20.02425 -19.21261 -17.87847 -16.77146 -16.56076 -16.32357 -15.58311 -15.43251 -15.03479 -14.75294 -14.70496 -14.43825 -14.00539 -13.89120 -13.62534 -13.17899 -13.15133 -12.74314 -12.32752 -12.27888 -12.08371 -12.00751 -11.82358 -11.71243 -11.43272 -11.30242 -11.24031 -11.02044 -10.97841 -10.62353 -10.25414 -9.92248 -9.73568 -9.24588 -9.20472 -9.00786 -8.87126 -8.50785 -7.74993 -6.11801 -4.17909 0.66586 1.14670 2.73465 2.79203 3.25246 3.31163 3.32487 3.54053 3.71187 3.76923 4.36637 4.50819 4.61137 4.72161 4.82244 4.91593 5.14693 5.17396 5.20638 5.24176 5.26915 5.57375 5.59696 5.73355 5.75645 5.81796 5.90234 5.94334 6.07564 6.10053 6.14751 6.17447 6.21410 6.35062 6.47929 6.48642 6.65406 6.95664 7.35485 7.40883 7.46650 7.83043 8.13186 8.13742 8.26776 8.77092 8.92953 9.47439 10.96185 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.012963 B = 0.004855 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.436565 B = 5765.551874 C = 7294.712612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.596 5.596 3 C 0.243 3.757 4 C -0.531 4.531 5 H 0.056 0.944 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.507 3.493 13 O -0.527 6.527 14 C 0.159 3.841 15 C -0.168 4.168 16 C -0.143 4.143 17 N -0.710 5.710 18 C 0.561 3.439 19 O -0.532 6.532 20 C -0.134 4.134 21 C -0.060 4.060 22 C -0.131 4.131 23 C -0.096 4.096 24 C -0.125 4.125 25 C -0.085 4.085 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.265 0.735 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.407 0.593 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.394 -12.904 -4.961 19.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.328 5.328 3 C 0.124 3.876 4 C -0.570 4.570 5 H 0.074 0.926 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.291 3.709 13 O -0.402 6.402 14 C 0.070 3.930 15 C -0.226 4.226 16 C -0.201 4.201 17 N -0.366 5.366 18 C 0.349 3.651 19 O -0.410 6.410 20 C -0.137 4.137 21 C -0.079 4.079 22 C -0.149 4.149 23 C -0.115 4.115 24 C -0.143 4.143 25 C -0.104 4.104 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.246 0.754 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.148 0.852 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.595 -13.373 -4.320 19.553 hybrid contribution 0.150 1.028 -1.314 1.675 sum -13.445 -12.344 -5.635 19.102 Atomic orbital electron populations 1.22189 0.81509 1.03529 1.01101 1.48178 1.06186 1.07723 1.70749 1.19355 0.92737 0.77876 0.97597 1.21337 1.37126 1.06480 0.92017 0.92613 1.24927 0.95235 0.96337 0.97433 1.69913 1.37994 1.14272 1.30848 0.86566 0.78386 0.77951 0.84561 1.20218 1.21105 1.20158 1.20175 0.87806 0.84568 0.78367 1.90689 1.13730 1.86551 1.49247 1.20678 0.90024 0.95243 0.87051 1.22348 1.00699 1.04364 0.95188 1.21944 0.97917 0.97103 1.03176 1.46354 1.39127 1.20124 1.31020 1.18265 0.80032 0.82681 0.84121 1.90693 1.69295 1.30952 1.50086 1.19992 0.99769 0.96470 0.97423 1.21273 0.92889 0.97698 0.96076 1.21156 0.99649 0.98533 0.95578 1.21386 0.97860 0.93348 0.98878 1.21158 0.96252 0.99287 0.97633 1.21450 0.97845 0.96779 0.94291 0.93428 0.90529 0.91123 0.94847 0.93632 0.92540 0.89114 0.91365 0.91581 0.92118 0.90877 0.90656 0.75398 0.84644 0.85427 0.85652 0.85220 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 8.67 59.85 0.52 1.46 16 2 N -0.60 -12.13 2.81 -182.95 -0.51 -12.64 16 3 C 0.24 6.16 5.19 -5.19 -0.03 6.13 16 4 C -0.53 -14.35 9.39 -34.44 -0.32 -14.68 16 5 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 8 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.51 10.38 6.49 -10.98 -0.07 10.31 16 13 O -0.53 -13.02 15.53 5.56 0.09 -12.93 16 14 C 0.16 2.58 0.63 -132.97 -0.08 2.49 16 15 C -0.17 -2.43 8.12 37.16 0.30 -2.12 16 16 C -0.14 -2.31 7.81 37.16 0.29 -2.02 16 17 N -0.71 -10.15 3.08 -49.61 -0.15 -10.30 16 18 C 0.56 7.77 7.20 -12.33 -0.09 7.69 16 19 O -0.53 -8.36 12.57 5.31 0.07 -8.29 16 20 C -0.13 -1.58 5.87 -104.97 -0.62 -2.20 16 21 C -0.06 -0.64 9.60 -39.19 -0.38 -1.01 16 22 C -0.13 -1.11 10.03 -39.64 -0.40 -1.51 16 23 C -0.10 -0.78 10.04 -39.49 -0.40 -1.17 16 24 C -0.13 -1.13 10.03 -39.64 -0.40 -1.53 16 25 C -0.08 -0.90 9.54 -39.19 -0.37 -1.28 16 26 H 0.05 0.66 7.01 -51.93 -0.36 0.30 16 27 H 0.08 1.18 8.03 -51.93 -0.42 0.76 16 28 H 0.07 0.95 4.13 -51.93 -0.21 0.74 16 29 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.05 1.32 7.34 -51.93 -0.38 0.93 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.09 1.32 5.90 -51.93 -0.31 1.01 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.90 5.33 -51.93 -0.28 0.62 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.17 7.99 -51.93 -0.41 0.76 16 37 H 0.07 1.16 6.45 -51.93 -0.33 0.83 16 38 H 0.41 5.67 5.07 -40.82 -0.21 5.47 16 39 H 0.14 1.39 7.65 -52.49 -0.40 0.99 16 40 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 43 H 0.13 1.31 6.41 -52.48 -0.34 0.97 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -32.47 348.15 -7.42 -39.89 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.73 Total: 5.89 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.14 Total: 2.22 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.07 Total: -48.08 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.15 Total: -21.22 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.47 -7.42 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359035000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.231 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds