Wall clock time and date at job start Tue Mar 31 2020 09:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47129 * 2 1 4 4 C 1.50701 * 109.47230 * 179.97438 * 3 2 1 5 5 O 1.21285 * 119.99589 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00386 * 179.97438 * 4 3 2 7 7 C 1.39917 * 120.00522 * 185.33873 * 6 4 3 8 8 C 1.38939 * 120.03888 * 214.81422 * 7 6 4 9 9 C 1.38140 * 120.06943 * 180.02562 * 8 7 6 10 10 C 1.38179 * 120.14270 * 359.95016 * 9 8 7 11 11 C 1.38902 * 120.07155 * 0.04529 * 10 9 8 12 12 N 1.39923 * 120.03685 * 180.25241 * 11 10 9 13 13 C 1.34775 * 120.00046 * 324.94854 * 12 11 10 14 14 O 1.21289 * 119.99556 * 354.66851 * 13 12 11 15 15 C 1.50694 * 120.00160 * 174.66759 * 13 12 11 16 16 C 1.53004 * 109.47339 * 179.97438 * 15 13 12 17 17 C 1.50705 * 109.47045 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99809 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99722 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99962 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00177 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46859 * 90.00081 * 21 19 17 23 23 H 1.48497 * 109.47250 * 210.00004 * 21 19 17 24 24 H 1.48498 * 109.47161 * 330.00293 * 21 19 17 25 25 C 1.38732 * 120.03259 * 34.78734 * 7 6 4 26 26 H 1.09000 * 109.46959 * 300.00193 * 1 2 3 27 27 H 1.09003 * 109.47382 * 59.99455 * 1 2 3 28 28 H 1.08992 * 109.47215 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46820 * 240.00331 * 2 1 3 30 30 H 1.08995 * 109.47368 * 119.99883 * 2 1 3 31 31 H 1.09002 * 109.46999 * 60.00441 * 3 2 1 32 32 H 1.09001 * 109.47753 * 300.00083 * 3 2 1 33 33 H 0.97008 * 119.99386 * 5.34769 * 6 4 3 34 34 H 1.07997 * 119.96693 * 359.97077 * 8 7 6 35 35 H 1.08009 * 119.92731 * 179.97438 * 9 8 7 36 36 H 1.07998 * 119.96746 * 180.02562 * 10 9 8 37 37 H 0.97004 * 119.99657 * 144.95155 * 12 11 10 38 38 H 1.09003 * 109.47359 * 300.00433 * 15 13 12 39 39 H 1.09004 * 109.47102 * 60.00102 * 15 13 12 40 40 H 1.08993 * 109.46864 * 299.99990 * 16 15 13 41 41 H 1.09004 * 109.46810 * 60.00082 * 16 15 13 42 42 H 0.96999 * 119.99664 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.06925 * 0.04423 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2210 2.6097 0.0002 7 6 5.6156 2.6123 -0.1119 8 6 6.3657 3.5685 0.5614 9 6 7.7427 3.5720 0.4507 10 6 8.3785 2.6246 -0.3287 11 6 7.6344 1.6659 -1.0043 12 7 8.2794 0.7036 -1.7891 13 6 9.3952 1.0283 -2.4717 14 8 9.7860 2.1765 -2.4840 15 6 10.1572 -0.0350 -3.2197 16 6 11.3727 0.5942 -3.9036 17 6 12.1351 -0.4694 -4.6510 18 1 11.7872 -1.4918 -4.6398 19 6 13.2766 -0.1372 -5.3492 20 7 13.9417 -1.0653 -6.0019 21 14 13.8778 1.6312 -5.3693 22 1 14.8080 1.8507 -4.2327 23 1 14.5856 1.8990 -6.6470 24 1 12.7179 2.5499 -5.2440 25 6 6.2510 1.6597 -0.8952 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.7390 3.4480 0.0778 34 1 5.8718 4.3103 1.1713 35 1 8.3235 4.3166 0.9749 36 1 9.4552 2.6297 -0.4129 37 1 7.9233 -0.1972 -1.8419 38 1 10.4899 -0.8029 -2.5212 39 1 9.5096 -0.4846 -3.9724 40 1 11.0396 1.3617 -4.6021 41 1 12.0205 1.0441 -3.1512 42 1 14.7446 -0.8315 -6.4934 43 1 5.6701 0.9155 -1.4198 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360022499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:38 Heat of formation + Delta-G solvation = -87.930490 kcal Electronic energy + Delta-G solvation = -23559.324697 eV Core-core repulsion = 19988.703733 eV Total energy + Delta-G solvation = -3570.620964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.85382 -41.08898 -39.30350 -36.49542 -35.56973 -35.30726 -35.15289 -33.38021 -31.32014 -30.60245 -28.54402 -27.99062 -24.43717 -24.26853 -22.90782 -22.36075 -21.40912 -20.97075 -19.34358 -19.15082 -18.09048 -17.80206 -17.26684 -16.88081 -16.80245 -16.56916 -16.24502 -15.68316 -15.36718 -15.04834 -15.01753 -14.66824 -14.49910 -14.44686 -14.00921 -13.87901 -13.45758 -13.02241 -12.93336 -12.85438 -12.66729 -12.59206 -12.17565 -12.03198 -11.99189 -11.83567 -11.77964 -11.61383 -11.42931 -11.11705 -10.96192 -10.79514 -10.76652 -9.44519 -8.98567 -8.32674 -6.36102 0.19221 0.31326 1.32773 1.34535 1.48734 1.49519 1.66450 1.92624 2.15801 2.33927 2.82145 3.02761 3.68627 3.77376 3.97234 3.99105 4.12810 4.19137 4.22765 4.30559 4.42281 4.47796 4.50403 4.55708 4.68197 4.71467 4.77446 4.90720 4.93074 5.19413 5.24780 5.26615 5.28435 5.31571 5.34990 5.40357 5.44097 5.47696 5.55712 5.59483 6.03728 6.21154 6.37712 6.43643 6.70093 7.10030 7.14331 7.29131 8.82938 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023039 B = 0.002494 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.042349 B =11222.947860 C =12179.648743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.129 4.129 4 C 0.504 3.496 5 O -0.565 6.565 6 N -0.661 5.661 7 C 0.157 3.843 8 C -0.151 4.151 9 C -0.080 4.080 10 C -0.160 4.160 11 C 0.151 3.849 12 N -0.669 5.669 13 C 0.518 3.482 14 O -0.557 6.557 15 C -0.115 4.115 16 C 0.006 3.994 17 C -0.530 4.530 18 H 0.050 0.950 19 C 0.012 3.988 20 N -0.943 5.943 21 Si 0.940 3.060 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.261 1.261 25 C -0.160 4.160 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.431 0.569 34 H 0.165 0.835 35 H 0.153 0.847 36 H 0.112 0.888 37 H 0.424 0.576 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.012 0.988 41 H 0.012 0.988 42 H 0.268 0.732 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.952 10.376 17.255 36.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.168 4.168 4 C 0.294 3.706 5 O -0.443 6.443 6 N -0.308 5.308 7 C 0.062 3.938 8 C -0.172 4.172 9 C -0.099 4.099 10 C -0.181 4.181 11 C 0.056 3.944 12 N -0.315 5.315 13 C 0.308 3.692 14 O -0.434 6.434 15 C -0.155 4.155 16 C -0.032 4.032 17 C -0.568 4.568 18 H 0.068 0.932 19 C -0.185 4.185 20 N -0.583 5.583 21 Si 0.764 3.236 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.185 1.185 25 C -0.183 4.183 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.271 0.729 34 H 0.182 0.818 35 H 0.171 0.829 36 H 0.130 0.870 37 H 0.262 0.738 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.077 0.923 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -29.134 10.351 17.087 35.326 hybrid contribution 0.663 0.079 -0.491 0.828 sum -28.471 10.430 16.596 34.567 Atomic orbital electron populations 1.21755 0.93630 1.02306 1.02874 1.21284 0.96807 0.95032 1.02018 1.21791 0.87442 1.00313 1.07274 1.21789 0.92223 0.82629 0.73958 1.90737 1.71467 1.32842 1.49218 1.43519 1.03980 1.10805 1.72514 1.17541 0.84054 0.96486 0.95720 1.21181 0.93453 1.01165 1.01406 1.21128 0.94623 0.97396 0.96774 1.21205 1.00246 0.97747 0.98897 1.17781 0.91246 0.92357 0.93005 1.43610 1.27001 1.14468 1.46405 1.21435 0.79881 0.90144 0.77784 1.90653 1.67975 1.22491 1.62324 1.21535 0.97241 0.96610 1.00095 1.19229 0.93394 0.95395 0.95200 1.21407 1.09335 0.95632 1.30472 0.93182 1.25826 0.96722 1.01403 0.94595 1.70028 1.18850 1.35225 1.34233 0.85802 0.79025 0.80774 0.77958 1.19276 1.20343 1.18497 1.20765 0.92040 1.02735 1.02763 0.91353 0.91664 0.92721 0.93133 0.92819 0.85565 0.86026 0.72872 0.81796 0.82890 0.87036 0.73811 0.87487 0.87604 0.96942 0.96959 0.92347 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 71.98 0.71 -0.30 16 2 C -0.11 -1.28 5.22 30.59 0.16 -1.12 16 3 C -0.13 -0.92 5.70 29.85 0.17 -0.75 16 4 C 0.50 8.07 7.56 87.66 0.66 8.74 16 5 O -0.57 -14.69 13.77 -3.05 -0.04 -14.74 16 6 N -0.66 -8.58 5.34 -303.57 -1.62 -10.20 16 7 C 0.16 3.20 6.25 38.14 0.24 3.44 16 8 C -0.15 -2.61 9.96 22.41 0.22 -2.39 16 9 C -0.08 -1.73 10.03 22.23 0.22 -1.51 16 10 C -0.16 -4.76 8.66 22.41 0.19 -4.56 16 11 C 0.15 4.53 6.24 38.14 0.24 4.77 16 12 N -0.67 -20.16 5.33 -303.56 -1.62 -21.78 16 13 C 0.52 19.30 7.55 87.66 0.66 19.96 16 14 O -0.56 -24.75 13.78 -3.06 -0.04 -24.79 16 15 C -0.12 -4.45 5.64 29.85 0.17 -4.29 16 16 C 0.01 0.29 3.33 29.85 0.10 0.39 16 17 C -0.53 -30.90 9.66 25.60 0.25 -30.66 16 18 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 19 C 0.01 0.74 5.47 84.65 0.46 1.20 16 20 N -0.94 -59.51 13.96 21.45 0.30 -59.21 16 21 Si 0.94 47.04 27.47 68.60 1.88 48.92 16 22 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.26 -12.94 6.54 99.48 0.65 -12.29 16 25 C -0.16 -4.26 8.57 22.52 0.19 -4.06 16 26 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.06 0.33 8.14 -2.39 -0.02 0.32 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 30 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 31 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.43 1.84 8.82 -92.70 -0.82 1.02 16 34 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.11 3.83 6.53 -2.91 -0.02 3.81 16 37 H 0.42 10.26 8.82 -92.71 -0.82 9.44 16 38 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 39 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 40 H 0.01 0.64 7.16 -2.39 -0.02 0.62 16 41 H 0.01 0.62 7.53 -2.39 -0.02 0.60 16 42 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 43 H 0.13 3.50 6.53 -2.91 -0.02 3.48 16 Total: -1.00 -81.55 361.15 2.86 -78.70 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -0.66 Total: 14.25 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 4.66 Total: -11.14 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -2.94 Total: -91.20 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.08 Total: -39.53 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.88 Total: 48.92 kcal Total: -81.55 2.86 -78.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360022499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.234 kcal (2) G-P(sol) polarization free energy of solvation -81.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds