Wall clock time and date at job start Tue Mar 31 2020 09:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47438 * 2 1 4 4 H 1.09001 * 110.53929 * 52.38530 * 3 2 1 5 5 C 1.54895 * 110.48589 * 289.77609 * 3 2 1 6 6 C 1.54961 * 102.77671 * 203.40346 * 5 3 2 7 7 C 1.54270 * 104.16191 * 37.88526 * 6 5 3 8 8 C 1.53869 * 106.63967 * 336.44607 * 7 6 5 9 9 H 1.09003 * 110.03849 * 119.30531 * 8 7 6 10 10 N 1.46498 * 110.03363 * 240.69106 * 8 7 6 11 11 S 1.65603 * 120.00139 * 263.54540 * 10 8 7 12 12 O 1.42101 * 106.40334 * 178.53934 * 11 10 8 13 13 O 1.42101 * 106.40198 * 311.45854 * 11 10 8 14 14 N 1.65598 * 107.21557 * 64.99777 * 11 10 8 15 15 C 1.46504 * 120.00248 * 270.00184 * 14 11 10 16 16 C 1.46504 * 120.00210 * 90.00244 * 14 11 10 17 17 H 1.09008 * 109.46795 * 359.97438 * 16 14 11 18 18 C 1.52998 * 109.47177 * 240.00028 * 16 14 11 19 19 C 1.50703 * 109.47275 * 119.99583 * 16 14 11 20 20 H 1.07997 * 119.99606 * 0.02562 * 19 16 14 21 21 C 1.37867 * 119.99561 * 180.02562 * 19 16 14 22 22 N 1.31510 * 120.00786 * 0.02562 * 21 19 16 23 23 Si 1.86809 * 119.99487 * 180.02562 * 21 19 16 24 24 H 1.48501 * 109.47213 * 90.00180 * 23 21 19 25 25 H 1.48501 * 109.46862 * 209.99867 * 23 21 19 26 26 H 1.48500 * 109.47222 * 329.99562 * 23 21 19 27 27 H 1.09005 * 109.47381 * 300.00603 * 1 2 3 28 28 H 1.09007 * 109.46872 * 60.00053 * 1 2 3 29 29 H 1.08997 * 109.47054 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47569 * 240.00093 * 2 1 3 31 31 H 1.08996 * 109.47354 * 119.99984 * 2 1 3 32 32 H 1.09001 * 110.75082 * 321.68881 * 5 3 2 33 33 H 1.08991 * 110.75596 * 84.87571 * 5 3 2 34 34 H 1.08997 * 110.47708 * 279.23123 * 6 5 3 35 35 H 1.09002 * 110.53308 * 156.56515 * 6 5 3 36 36 H 1.09002 * 110.03399 * 217.13605 * 7 6 5 37 37 H 1.08995 * 110.02943 * 95.75505 * 7 6 5 38 38 H 0.97002 * 120.00037 * 83.55059 * 10 8 7 39 39 H 1.08996 * 109.47070 * 89.99993 * 15 14 11 40 40 H 1.08998 * 109.47360 * 210.00080 * 15 14 11 41 41 H 1.09001 * 109.46606 * 329.99832 * 15 14 11 42 42 H 1.09000 * 109.47020 * 299.99827 * 18 16 14 43 43 H 1.08998 * 109.47034 * 59.99449 * 18 16 14 44 44 H 1.09003 * 109.47146 * 179.97438 * 18 16 14 45 45 H 0.96997 * 120.00501 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0107 0.8085 5 6 1.7579 2.1172 -1.3654 6 6 2.8160 3.2483 -1.4138 7 6 4.0702 2.6196 -0.7723 8 6 3.5773 1.4717 0.1260 9 1 3.9983 0.5251 -0.2129 10 7 3.9621 1.7223 1.5171 11 16 5.3352 1.0319 2.1337 12 8 5.4473 1.4895 3.4743 13 8 5.2841 -0.3445 1.7840 14 7 6.6197 1.6760 1.3107 15 6 7.1051 1.0301 0.0886 16 6 7.2709 2.8919 1.8046 17 1 6.7752 3.2245 2.7168 18 6 7.1743 3.9894 0.7430 19 6 8.7205 2.6021 2.0972 20 1 9.1172 1.6114 1.9313 21 6 9.5402 3.6016 2.5765 22 7 9.0570 4.8079 2.7790 23 14 11.3373 3.2425 2.9384 24 1 12.1487 3.5019 1.7220 25 1 11.8049 4.1197 4.0417 26 1 11.4870 1.8205 3.3395 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.9091 1.4124 -2.1831 33 1 0.7484 2.5272 -1.3924 34 1 2.4814 4.1085 -0.8341 35 1 3.0193 3.5378 -2.4449 36 1 4.5958 3.3632 -0.1732 37 1 4.7305 2.2303 -1.5471 38 1 3.4125 2.2927 2.0771 39 1 6.5804 1.4423 -0.7732 40 1 8.1749 1.2100 -0.0172 41 1 6.9211 -0.0427 0.1471 42 1 7.6696 3.6570 -0.1693 43 1 6.1258 4.1990 0.5315 44 1 7.6584 4.8942 1.1107 45 1 9.6338 5.5112 3.1159 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407974526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:39 Heat of formation + Delta-G solvation = -99.976713 kcal Electronic energy + Delta-G solvation = -25107.853621 eV Core-core repulsion = 21672.154244 eV Total energy + Delta-G solvation = -3435.699376 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.02624 -36.59650 -36.12247 -35.18122 -33.77407 -32.81562 -32.55190 -29.08382 -27.69194 -27.10322 -25.45092 -25.15785 -22.67193 -20.93900 -20.40602 -20.17986 -18.61683 -17.21811 -16.82879 -16.50945 -15.98625 -15.26732 -15.10694 -14.67469 -14.41923 -13.83453 -13.49183 -13.31100 -13.22421 -13.12381 -12.64938 -12.46946 -12.10626 -11.99707 -11.80792 -11.73486 -11.43690 -11.41787 -11.35516 -11.20983 -11.00847 -10.90323 -10.78453 -10.73238 -10.66496 -10.50958 -10.46600 -10.38049 -10.18207 -10.03943 -9.28076 -9.12880 -8.44274 -7.93070 -6.06155 -4.12521 1.28036 3.28799 3.36006 3.40120 3.55455 4.15464 4.40909 4.44183 4.55688 4.68918 5.03924 5.08190 5.17849 5.24352 5.25787 5.35358 5.46734 5.49774 5.52087 5.64788 5.68465 5.75743 5.79576 5.89080 5.92709 6.01747 6.04715 6.11764 6.18350 6.27258 6.35270 6.38306 6.51835 6.70263 6.85616 6.88556 7.05801 7.23247 7.53798 7.65348 7.81521 8.07050 8.29490 8.89530 9.53118 10.99424 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.025123 B = 0.004508 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.244316 B = 6210.059831 C = 6721.831670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.094 4.094 4 H 0.081 0.919 5 C -0.118 4.118 6 C -0.122 4.122 7 C -0.150 4.150 8 C 0.153 3.847 9 H 0.090 0.910 10 N -1.126 6.126 11 S 2.778 3.222 12 O -0.977 6.977 13 O -0.999 6.999 14 N -0.987 5.987 15 C 0.095 3.905 16 C 0.269 3.731 17 H 0.057 0.943 18 C -0.146 4.146 19 C -0.520 4.520 20 H 0.062 0.938 21 C 0.064 3.936 22 N -0.890 5.890 23 Si 0.897 3.103 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.410 0.590 39 H 0.037 0.963 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.032 0.968 43 H 0.012 0.988 44 H 0.090 0.910 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.614 -4.085 -9.557 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.114 4.114 4 H 0.099 0.901 5 C -0.156 4.156 6 C -0.159 4.159 7 C -0.189 4.189 8 C 0.045 3.955 9 H 0.108 0.892 10 N -0.884 5.884 11 S 2.787 3.213 12 O -0.961 6.961 13 O -0.982 6.982 14 N -0.830 5.830 15 C -0.052 4.052 16 C 0.166 3.834 17 H 0.075 0.925 18 C -0.205 4.205 19 C -0.559 4.559 20 H 0.081 0.919 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.725 3.275 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.198 1.198 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.243 0.757 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.031 0.969 44 H 0.109 0.891 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.393 -4.702 -8.885 17.556 hybrid contribution 0.823 0.510 0.119 0.975 sum -13.570 -4.192 -8.767 16.690 Atomic orbital electron populations 1.21772 0.95928 1.01402 1.01670 1.21596 0.95721 0.95906 1.02574 1.22309 0.94313 0.96509 0.98251 0.90062 1.22567 0.98806 0.97594 0.96639 1.22324 0.95205 0.97845 1.00556 1.22860 0.97911 0.98701 0.99441 1.21417 0.95077 0.98250 0.80711 0.89154 1.56311 1.44132 1.67295 1.20635 1.01937 0.72673 0.73394 0.73307 1.93610 1.85945 1.82246 1.34336 1.93519 1.86927 1.32757 1.85015 1.57608 1.46128 1.40791 1.38448 1.21333 1.02081 0.96023 0.85726 1.18699 0.93125 0.78656 0.92871 0.92485 1.22143 0.97020 1.02569 0.98794 1.21344 0.94022 0.96798 1.43782 0.91948 1.24895 0.98776 0.94990 0.95181 1.69856 1.35847 1.01757 1.45413 0.86512 0.84689 0.78375 0.77919 1.20694 1.21155 1.19849 0.92867 0.92747 0.92949 0.91728 0.91512 0.91310 0.91593 0.91677 0.91746 0.89583 0.91156 0.75671 0.94429 0.89923 0.92068 0.94897 0.96873 0.89114 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.79 37.15 0.36 -0.88 16 2 C -0.12 -1.19 5.28 -26.73 -0.14 -1.33 16 3 C -0.09 -0.95 2.56 -88.96 -0.23 -1.18 16 4 H 0.08 0.81 7.81 -51.93 -0.41 0.41 16 5 C -0.12 -1.03 5.68 -24.70 -0.14 -1.17 16 6 C -0.12 -1.19 6.84 -25.03 -0.17 -1.36 16 7 C -0.15 -1.80 6.28 -25.61 -0.16 -1.96 16 8 C 0.15 1.92 3.16 -66.82 -0.21 1.71 16 9 H 0.09 1.19 7.24 -51.93 -0.38 0.81 16 10 N -1.13 -16.52 5.46 -3.94 -0.02 -16.54 16 11 S 2.78 54.22 6.13 -107.50 -0.66 53.56 16 12 O -0.98 -22.94 16.70 -57.17 -0.95 -23.89 16 13 O -1.00 -20.63 16.10 -57.17 -0.92 -21.55 16 14 N -0.99 -20.08 3.12 -115.84 -0.36 -20.44 16 15 C 0.09 1.66 9.65 59.85 0.58 2.24 16 16 C 0.27 6.49 2.62 -69.08 -0.18 6.31 16 17 H 0.06 1.54 6.91 -51.92 -0.36 1.18 16 18 C -0.15 -3.23 8.97 37.16 0.33 -2.89 16 19 C -0.52 -13.90 7.99 -34.44 -0.28 -14.18 16 20 H 0.06 1.66 7.33 -52.49 -0.38 1.28 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 22 N -0.89 -24.68 11.32 55.43 0.63 -24.05 16 23 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.40 7.55 -51.93 -0.39 0.01 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.61 8.02 -51.93 -0.42 0.19 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.57 7.97 -51.93 -0.41 0.16 16 33 H 0.07 0.51 8.05 -51.93 -0.42 0.09 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.20 5.96 -51.93 -0.31 0.89 16 37 H 0.07 0.81 7.32 -51.93 -0.38 0.43 16 38 H 0.41 5.33 8.62 -34.47 -0.30 5.03 16 39 H 0.04 0.55 6.97 -51.93 -0.36 0.19 16 40 H 0.08 1.52 7.02 -51.93 -0.36 1.16 16 41 H 0.06 1.02 7.02 -51.93 -0.36 0.65 16 42 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 43 H 0.01 0.24 6.18 -51.93 -0.32 -0.08 16 44 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 45 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -31.21 356.53 -9.79 -41.00 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.53 Total: 3.52 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.33 Total: -13.06 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.24 Total: -61.03 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -1.88 Total: -45.45 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 54.22 SS G_CDS: -0.66 Total: 53.56 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.21 -9.79 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407974526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.972 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds