Wall clock time and date at job start Tue Mar 31 2020 09:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46834 * 2 1 4 4 H 1.08998 * 110.00094 * 53.81622 * 3 2 1 5 5 C 1.54334 * 109.99072 * 292.77392 * 3 2 1 6 6 C 1.55161 * 103.02104 * 218.66726 * 5 3 2 7 7 H 1.08997 * 111.00108 * 153.38005 * 6 5 3 8 8 C 1.52996 * 111.03752 * 277.21885 * 6 5 3 9 9 C 1.54908 * 101.58019 * 35.31036 * 6 5 3 10 10 N 1.47033 * 109.87998 * 174.91128 * 3 2 1 11 11 S 1.65597 * 125.64600 * 298.39216 * 10 3 2 12 12 O 1.42095 * 106.40150 * 149.93453 * 11 10 3 13 13 O 1.42102 * 106.40404 * 17.01601 * 11 10 3 14 14 N 1.65602 * 107.21701 * 263.47572 * 11 10 3 15 15 C 1.46495 * 119.99799 * 269.99648 * 14 11 10 16 16 C 1.46497 * 120.00049 * 90.00695 * 14 11 10 17 17 H 1.09005 * 109.47173 * 359.97438 * 16 14 11 18 18 C 1.52997 * 109.47621 * 119.99475 * 16 14 11 19 19 C 1.50700 * 109.46882 * 239.99850 * 16 14 11 20 20 H 1.07999 * 120.00007 * 359.97438 * 19 16 14 21 21 C 1.37877 * 120.00235 * 179.97438 * 19 16 14 22 22 N 1.31515 * 119.99908 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 120.00246 * 179.97438 * 21 19 16 24 24 H 1.48497 * 109.46877 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47036 * 300.00182 * 23 21 19 26 26 H 1.48494 * 109.46957 * 59.99930 * 23 21 19 27 27 H 1.09001 * 109.46697 * 65.18010 * 1 2 3 28 28 H 1.08995 * 109.47044 * 185.17353 * 1 2 3 29 29 H 1.09000 * 109.47554 * 305.18168 * 1 2 3 30 30 H 1.08995 * 109.47539 * 239.99659 * 2 1 3 31 31 H 1.09003 * 109.46411 * 119.99273 * 2 1 3 32 32 H 1.09005 * 110.84471 * 100.20187 * 5 3 2 33 33 H 1.09000 * 110.66676 * 337.05353 * 5 3 2 34 34 H 1.08999 * 109.47358 * 173.66546 * 8 6 5 35 35 H 1.08996 * 109.47673 * 293.66904 * 8 6 5 36 36 H 1.09007 * 109.47218 * 53.67368 * 8 6 5 37 37 H 1.09004 * 110.36847 * 204.15106 * 9 6 5 38 38 H 1.08994 * 110.36938 * 81.82659 * 9 6 5 39 39 H 1.08997 * 109.47712 * 269.99998 * 15 14 11 40 40 H 1.09001 * 109.47005 * 30.00673 * 15 14 11 41 41 H 1.09010 * 109.46982 * 150.00249 * 15 14 11 42 42 H 1.08998 * 109.47062 * 179.97438 * 18 16 14 43 43 H 1.08999 * 109.47492 * 300.00109 * 18 16 14 44 44 H 1.09005 * 109.46884 * 59.99778 * 18 16 14 45 45 H 0.96999 * 120.00061 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5941 1.9956 0.8267 5 6 1.6864 2.1271 -1.3373 6 6 2.9444 2.9856 -1.6338 7 1 3.0614 3.1503 -2.7048 8 6 2.8916 4.3159 -0.8799 9 6 4.0752 2.0805 -1.0844 10 7 3.5051 1.4549 0.1226 11 16 4.3715 0.8584 1.4016 12 8 5.6161 0.4208 0.8738 13 8 3.4902 0.0073 2.1214 14 7 4.7103 2.1342 2.4017 15 6 5.9393 2.9082 2.2109 16 6 3.7810 2.4885 3.4774 17 1 2.9312 1.8060 3.4629 18 6 4.4971 2.3833 4.8254 19 6 3.2943 3.9004 3.2759 20 1 3.6426 4.4763 2.4313 21 6 2.4042 4.4570 4.1698 22 7 1.9804 3.7558 5.1986 23 14 1.8014 6.2074 3.9204 24 1 0.8594 6.5665 5.0107 25 1 2.9591 7.1372 3.9408 26 1 1.1071 6.3100 2.6118 27 1 -0.3633 0.4314 -0.9328 28 1 -0.3633 -1.0234 0.0927 29 1 -0.3634 0.5921 0.8399 30 1 1.8934 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 0.8050 2.7592 -1.2284 33 1 1.5327 1.3849 -2.1206 34 1 3.8332 4.8481 -1.0155 35 1 2.0728 4.9215 -1.2682 36 1 2.7314 4.1260 0.1815 37 1 4.9482 2.6794 -0.8249 38 1 4.3409 1.3186 -1.8171 39 1 6.7419 2.4674 2.8021 40 1 6.2160 2.8965 1.1566 41 1 5.7744 3.9368 2.5319 42 1 3.8058 2.6474 5.6256 43 1 4.8492 1.3621 4.9711 44 1 5.3468 3.0660 4.8396 45 1 1.3539 4.1473 5.8272 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407975693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:43 Heat of formation + Delta-G solvation = -105.197632 kcal Electronic energy + Delta-G solvation = -25966.661282 eV Core-core repulsion = 22530.735510 eV Total energy + Delta-G solvation = -3435.925772 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.11986 -38.38144 -37.89512 -36.92315 -34.59172 -34.47791 -32.84985 -30.94027 -29.02190 -27.45542 -27.14298 -27.00914 -24.42538 -22.59353 -22.09370 -20.94790 -19.79704 -18.64514 -18.49017 -18.28433 -17.10348 -16.64636 -16.24681 -15.58025 -15.46645 -15.12717 -14.86476 -14.73521 -14.43683 -14.36214 -13.75757 -13.72851 -13.61819 -13.35500 -13.26352 -13.18822 -13.00424 -12.98990 -12.80416 -12.75357 -12.68617 -12.52969 -12.27488 -12.20387 -12.13409 -11.89851 -11.75055 -11.64455 -11.47507 -11.18761 -11.14340 -10.48387 -9.92236 -9.63362 -8.07713 -6.21971 -0.34660 1.45734 1.46221 1.53467 2.00400 2.45516 2.56641 3.20671 3.25423 3.60271 3.80454 3.94975 4.05592 4.19194 4.32736 4.37551 4.56514 4.58138 4.65930 4.72963 4.75158 4.78155 4.81747 4.92902 4.94142 4.98241 5.02941 5.09832 5.12573 5.18237 5.21262 5.23086 5.28138 5.31529 5.43486 5.46976 5.55318 5.60337 5.65711 5.76205 5.87697 6.11181 6.29653 6.86466 7.47125 8.96875 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.007508 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.855069 B = 3728.416878 C = 4323.448239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.157 4.157 3 C 0.151 3.849 4 H 0.048 0.952 5 C -0.108 4.108 6 C -0.090 4.090 7 H 0.119 0.881 8 C -0.148 4.148 9 C 0.117 3.883 10 N -1.011 6.011 11 S 2.802 3.198 12 O -1.008 7.008 13 O -1.008 7.008 14 N -0.998 5.998 15 C 0.102 3.898 16 C 0.277 3.723 17 H 0.021 0.979 18 C -0.139 4.139 19 C -0.522 4.522 20 H 0.069 0.931 21 C 0.018 3.982 22 N -0.919 5.919 23 Si 0.954 3.046 24 H -0.291 1.291 25 H -0.270 1.270 26 H -0.268 1.268 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.015 0.985 44 H 0.043 0.957 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.322 -0.105 -15.209 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.196 4.196 3 C 0.045 3.955 4 H 0.066 0.934 5 C -0.147 4.147 6 C -0.110 4.110 7 H 0.137 0.863 8 C -0.205 4.205 9 C -0.008 4.008 10 N -0.852 5.852 11 S 2.814 3.186 12 O -0.992 6.992 13 O -0.992 6.992 14 N -0.839 5.839 15 C -0.044 4.044 16 C 0.173 3.827 17 H 0.039 0.961 18 C -0.198 4.198 19 C -0.561 4.561 20 H 0.087 0.913 21 C -0.181 4.181 22 N -0.558 5.558 23 Si 0.780 3.220 24 H -0.217 1.217 25 H -0.196 1.196 26 H -0.193 1.193 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.034 0.966 44 H 0.062 0.938 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.556 -1.039 -14.833 14.880 hybrid contribution -0.400 1.048 0.812 1.385 sum 0.156 0.009 -14.022 14.023 Atomic orbital electron populations 1.21653 0.93542 1.02181 1.02438 1.22251 0.98174 0.96408 1.02770 1.21430 0.78228 0.96115 0.99747 0.93353 1.22766 0.98389 0.98973 0.94595 1.22343 0.93524 0.93863 1.01254 0.86323 1.21790 1.02176 0.96454 1.00088 1.22296 0.96890 0.95858 0.85718 1.58917 1.16390 1.76948 1.32935 1.00987 0.71961 0.73549 0.72099 1.93506 1.44365 1.80909 1.80445 1.93498 1.67241 1.65626 1.72859 1.57723 1.30754 1.50423 1.44995 1.21358 0.84557 0.97592 1.00892 1.18344 0.85992 0.95455 0.82930 0.96116 1.21949 1.00047 0.97139 1.00704 1.21525 1.25803 0.98549 1.10246 0.91291 1.25649 0.96381 1.01281 0.94831 1.70014 1.32938 1.38379 1.14465 0.85677 0.78194 0.80436 0.77742 1.21693 1.19560 1.19287 0.90242 0.91913 0.93949 0.90320 0.92653 0.89486 0.88413 0.92038 0.91611 0.94471 0.91105 0.90093 0.93222 0.91032 0.90399 0.91109 0.96559 0.93802 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.68 71.98 0.70 -2.76 16 2 C -0.16 -4.69 5.42 30.59 0.17 -4.52 16 3 C 0.15 4.65 2.68 45.34 0.12 4.77 16 4 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 5 C -0.11 -2.29 5.21 31.79 0.17 -2.13 16 6 C -0.09 -1.82 3.72 -9.40 -0.03 -1.85 16 7 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 8 C -0.15 -3.55 9.24 71.98 0.67 -2.89 16 9 C 0.12 2.92 6.51 86.86 0.57 3.49 16 10 N -1.01 -33.46 3.44 -484.24 -1.67 -35.13 16 11 S 2.80 115.32 6.23 -56.49 -0.35 114.97 16 12 O -1.01 -42.51 16.88 -128.00 -2.16 -44.67 16 13 O -1.01 -48.10 13.86 -128.00 -1.77 -49.87 16 14 N -1.00 -42.34 3.12 -520.45 -1.62 -43.97 16 15 C 0.10 3.60 9.28 127.77 1.19 4.79 16 16 C 0.28 13.83 2.62 44.24 0.12 13.95 16 17 H 0.02 1.20 6.91 -2.38 -0.02 1.18 16 18 C -0.14 -6.82 8.97 71.98 0.65 -6.17 16 19 C -0.52 -26.43 7.99 25.60 0.20 -26.22 16 20 H 0.07 3.34 7.33 -2.91 -0.02 3.32 16 21 C 0.02 0.95 5.30 84.65 0.45 1.39 16 22 N -0.92 -51.18 11.32 21.45 0.24 -50.94 16 23 Si 0.95 41.12 29.54 68.60 2.03 43.14 16 24 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H 0.08 1.50 7.65 -2.39 -0.02 1.48 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 2.00 8.03 -2.39 -0.02 1.98 16 31 H 0.05 2.07 5.66 -2.39 -0.01 2.06 16 32 H 0.09 1.72 8.05 -2.38 -0.02 1.70 16 33 H 0.10 1.60 7.77 -2.39 -0.02 1.58 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.04 1.19 7.83 -2.38 -0.02 1.17 16 37 H 0.07 1.73 7.91 -2.38 -0.02 1.71 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 2.16 7.65 -2.39 -0.02 2.14 16 41 H 0.08 2.77 7.02 -2.38 -0.02 2.75 16 42 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.04 1.99 7.67 -2.38 -0.02 1.97 16 45 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -65.32 359.46 0.58 -64.74 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.94 Total: 19.88 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 4.95 Total: -18.15 kcal Atomic # 7 Polarization: -126.99 SS G_CDS: -3.05 Total: -130.03 kcal Atomic # 8 Polarization: -90.61 SS G_CDS: -3.94 Total: -94.55 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 115.32 SS G_CDS: -0.35 Total: 114.97 kcal Total: -65.32 0.58 -64.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407975693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.455 kcal (2) G-P(sol) polarization free energy of solvation -65.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds