Wall clock time and date at job start Tue Mar 31 2020 09:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46999 * 2 1 4 4 H 1.08999 * 109.87207 * 57.66854 * 3 2 1 5 5 C 1.54324 * 109.88357 * 296.65371 * 3 2 1 6 6 C 1.55151 * 102.94126 * 218.39038 * 5 3 2 7 7 H 1.09003 * 111.00759 * 153.57487 * 6 5 3 8 8 C 1.53000 * 111.03721 * 277.41056 * 6 5 3 9 9 C 1.54911 * 101.58376 * 35.49715 * 6 5 3 10 10 N 1.47024 * 109.88003 * 178.84212 * 3 2 1 11 11 S 1.65594 * 125.64742 * 298.39249 * 10 3 2 12 12 O 1.42098 * 106.40682 * 24.64447 * 11 10 3 13 13 O 1.42107 * 106.40064 * 157.56511 * 11 10 3 14 14 N 1.65601 * 107.21827 * 271.10052 * 11 10 3 15 15 C 1.46499 * 120.00155 * 269.99935 * 14 11 10 16 16 C 1.46507 * 119.99557 * 90.00504 * 14 11 10 17 17 H 1.08994 * 109.47244 * 0.02562 * 16 14 11 18 18 C 1.52998 * 109.46872 * 239.99553 * 16 14 11 19 19 C 1.50705 * 109.46878 * 120.00173 * 16 14 11 20 20 H 1.07994 * 120.00271 * 359.97438 * 19 16 14 21 21 C 1.37877 * 119.99567 * 179.97438 * 19 16 14 22 22 N 1.31519 * 120.00287 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99842 * 179.97438 * 21 19 16 24 24 H 1.48503 * 109.47049 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46698 * 120.00173 * 23 21 19 26 26 H 1.48494 * 109.47257 * 240.00239 * 23 21 19 27 27 H 1.08997 * 109.46736 * 186.78910 * 1 2 3 28 28 H 1.09006 * 109.46851 * 306.78281 * 1 2 3 29 29 H 1.08995 * 109.47399 * 66.78924 * 1 2 3 30 30 H 1.08998 * 109.46792 * 240.00238 * 2 1 3 31 31 H 1.08994 * 109.47072 * 120.00226 * 2 1 3 32 32 H 1.08995 * 110.72331 * 100.02493 * 5 3 2 33 33 H 1.09001 * 110.86676 * 336.82043 * 5 3 2 34 34 H 1.09001 * 109.47313 * 173.66374 * 8 6 5 35 35 H 1.09000 * 109.47206 * 293.67105 * 8 6 5 36 36 H 1.09002 * 109.47076 * 53.67020 * 8 6 5 37 37 H 1.09008 * 110.36297 * 81.83194 * 9 6 5 38 38 H 1.08997 * 110.36852 * 204.15259 * 9 6 5 39 39 H 1.09005 * 109.46855 * 90.00392 * 15 14 11 40 40 H 1.08996 * 109.47159 * 209.99954 * 15 14 11 41 41 H 1.08994 * 109.47388 * 330.00010 * 15 14 11 42 42 H 1.08999 * 109.47462 * 300.00741 * 18 16 14 43 43 H 1.09004 * 109.47197 * 59.99936 * 18 16 14 44 44 H 1.08996 * 109.47260 * 180.02562 * 18 16 14 45 45 H 0.96995 * 119.99844 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6466 1.9746 0.8662 5 6 1.6012 2.1544 -1.2970 6 6 2.8356 3.0255 -1.6500 7 1 2.8845 3.2178 -2.7219 8 6 2.8269 4.3360 -0.8606 9 6 4.0012 2.1116 -1.1961 10 7 3.5099 1.4532 0.0279 11 16 4.4568 0.8283 1.2342 12 8 3.6787 -0.1713 1.8781 13 8 5.7278 0.5698 0.6535 14 7 4.6880 2.0311 2.3488 15 6 5.8303 2.9392 2.2202 16 6 3.7501 2.1869 3.4634 17 1 2.9724 1.4265 3.3929 18 6 3.1126 3.5764 3.4031 19 6 4.4891 2.0294 4.7674 20 1 5.5509 1.8326 4.7660 21 6 3.8094 2.1367 5.9622 22 7 2.5161 2.3759 5.9640 23 14 4.7251 1.9409 7.5785 24 1 6.1611 1.6790 7.3053 25 1 4.5926 3.1862 8.3765 26 1 4.1498 0.8023 8.3386 27 1 -0.3633 -1.0205 0.1215 28 1 -0.3633 0.6154 0.8231 29 1 -0.3634 0.4050 -0.9444 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.7267 2.7797 -1.1169 33 1 1.4004 1.4316 -2.0878 34 1 3.7566 4.8755 -1.0416 35 1 1.9835 4.9477 -1.1811 36 1 2.7343 4.1186 0.2035 37 1 4.2223 1.3696 -1.9634 38 1 4.8872 2.7075 -0.9769 39 1 5.5429 3.8018 1.6190 40 1 6.1418 3.2736 3.2097 41 1 6.6562 2.4179 1.7363 42 1 3.8907 4.3365 3.4739 43 1 2.5782 3.6904 2.4599 44 1 2.4152 3.6925 4.2326 45 1 2.0380 2.4510 6.8045 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407975695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:47 Heat of formation + Delta-G solvation = -85.771626 kcal Electronic energy + Delta-G solvation = -25754.433778 eV Core-core repulsion = 22319.350381 eV Total energy + Delta-G solvation = -3435.083398 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.11564 -36.69476 -36.11817 -35.19905 -33.54313 -32.56071 -31.78088 -29.08546 -28.03451 -26.42050 -25.48373 -25.15642 -23.38182 -21.03710 -20.64385 -19.99702 -18.26592 -17.29556 -16.87242 -16.32110 -15.62036 -15.24745 -14.60368 -14.51416 -14.13622 -13.70727 -13.45834 -13.39024 -13.14135 -12.77121 -12.66536 -12.52253 -12.10172 -12.00916 -11.80940 -11.76094 -11.62095 -11.38780 -11.32015 -11.20008 -11.11679 -10.91469 -10.83062 -10.80756 -10.68247 -10.60865 -10.40608 -10.21468 -10.09021 -10.01051 -9.25577 -8.71667 -8.44674 -7.94009 -6.07350 -4.13560 1.19643 3.27589 3.35848 3.39917 3.52661 4.10205 4.40025 4.45253 4.63449 4.88578 5.01484 5.13548 5.24417 5.31761 5.38814 5.52336 5.55728 5.60359 5.66440 5.71089 5.76402 5.86737 5.94367 6.01078 6.01275 6.12042 6.17100 6.22239 6.25804 6.34855 6.39021 6.56201 6.63579 6.70391 6.72643 6.85476 6.86784 7.05247 7.49299 7.64228 7.80213 8.05604 8.28375 8.88690 9.52080 10.98292 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.005643 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.201251 B = 4961.052357 C = 5182.242542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.158 4.158 3 C 0.156 3.844 4 H 0.077 0.923 5 C -0.117 4.117 6 C -0.103 4.103 7 H 0.083 0.917 8 C -0.145 4.145 9 C 0.129 3.871 10 N -1.017 6.017 11 S 2.790 3.210 12 O -0.967 6.967 13 O -0.995 6.995 14 N -0.989 5.989 15 C 0.097 3.903 16 C 0.269 3.731 17 H 0.058 0.942 18 C -0.145 4.145 19 C -0.519 4.519 20 H 0.063 0.937 21 C 0.064 3.936 22 N -0.890 5.890 23 Si 0.897 3.103 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.283 1.283 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.032 0.968 43 H 0.009 0.991 44 H 0.091 0.909 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.368 2.942 -14.954 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.049 3.951 4 H 0.095 0.905 5 C -0.156 4.156 6 C -0.123 4.123 7 H 0.101 0.899 8 C -0.202 4.202 9 C 0.003 3.997 10 N -0.855 5.855 11 S 2.801 3.199 12 O -0.951 6.951 13 O -0.980 6.980 14 N -0.831 5.831 15 C -0.049 4.049 16 C 0.166 3.834 17 H 0.076 0.924 18 C -0.205 4.205 19 C -0.559 4.559 20 H 0.081 0.919 21 C -0.138 4.138 22 N -0.528 5.528 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.209 1.209 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.028 0.972 44 H 0.110 0.890 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.094 2.035 -14.712 14.999 hybrid contribution 0.306 0.378 0.937 1.056 sum -1.788 2.413 -13.775 14.098 Atomic orbital electron populations 1.21685 0.95330 1.01771 1.01488 1.22300 0.96401 0.96679 1.04298 1.21303 0.79071 0.96049 0.98651 0.90544 1.22753 0.97698 0.98359 0.96813 1.22348 0.94914 0.95165 0.99857 0.89888 1.21776 1.01416 0.95689 1.01343 1.21920 0.96619 0.94599 0.86526 1.59374 1.16151 1.75761 1.34167 1.01643 0.72420 0.73996 0.71866 1.93551 1.71230 1.55813 1.74548 1.93516 1.41080 1.84673 1.78691 1.57750 1.35910 1.49836 1.39575 1.21281 0.87788 0.92709 1.03144 1.18710 0.87263 0.94681 0.82750 0.92436 1.22106 1.00468 0.98314 0.99570 1.21378 0.95533 1.48962 0.90036 0.91930 1.24900 0.94931 0.94888 0.99128 1.69868 1.07249 1.49031 1.26676 0.86458 0.80026 0.77684 0.83346 1.19743 1.20999 1.20891 0.92722 0.92328 0.93103 0.92139 0.88392 0.90443 0.90798 0.92639 0.92694 0.91577 0.91917 0.91106 0.94577 0.89879 0.92108 0.94932 0.97155 0.89020 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.60 37.16 0.36 -1.38 16 2 C -0.16 -2.30 5.33 -26.73 -0.14 -2.44 16 3 C 0.16 2.23 2.78 -66.95 -0.19 2.05 16 4 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 5 C -0.12 -1.25 5.07 -24.90 -0.13 -1.38 16 6 C -0.10 -1.06 3.72 -88.47 -0.33 -1.39 16 7 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 8 C -0.15 -1.55 9.24 37.16 0.34 -1.21 16 9 C 0.13 1.65 6.43 -2.53 -0.02 1.63 16 10 N -1.02 -16.14 3.44 -104.42 -0.36 -16.50 16 11 S 2.79 56.53 6.31 -107.50 -0.68 55.85 16 12 O -0.97 -22.48 13.82 -57.17 -0.79 -23.27 16 13 O -1.00 -21.37 16.31 -57.17 -0.93 -22.30 16 14 N -0.99 -20.81 3.12 -115.85 -0.36 -21.17 16 15 C 0.10 1.77 9.66 59.85 0.58 2.35 16 16 C 0.27 6.55 2.62 -69.08 -0.18 6.37 16 17 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 18 C -0.15 -3.26 8.97 37.16 0.33 -2.93 16 19 C -0.52 -13.98 7.99 -34.44 -0.28 -14.25 16 20 H 0.06 1.69 7.33 -52.49 -0.38 1.30 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 22 N -0.89 -24.61 11.32 55.43 0.63 -23.98 16 23 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.50 7.50 -51.93 -0.39 0.11 16 30 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 31 H 0.10 1.76 5.66 -51.93 -0.29 1.47 16 32 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 33 H 0.07 0.71 7.74 -51.93 -0.40 0.30 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.86 7.45 -51.93 -0.39 0.48 16 37 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.07 0.88 8.05 -51.93 -0.42 0.47 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.57 7.02 -51.93 -0.36 1.21 16 41 H 0.06 1.05 7.02 -51.93 -0.36 0.69 16 42 H 0.03 0.69 7.67 -51.93 -0.40 0.30 16 43 H 0.01 0.19 7.77 -51.93 -0.40 -0.21 16 44 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 45 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -30.78 357.69 -9.70 -40.48 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.84 Total: 0.35 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 0.26 Total: -10.96 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.09 Total: -61.65 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -1.72 Total: -45.57 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 56.53 SS G_CDS: -0.68 Total: 55.85 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.78 -9.70 -40.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407975695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.288 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds