Wall clock time and date at job start Tue Mar 31 2020 09:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46999 * 2 1 4 4 H 1.08999 * 109.87207 * 57.66854 * 3 2 1 5 5 C 1.54324 * 109.88357 * 296.65371 * 3 2 1 6 6 C 1.55151 * 102.94126 * 218.39038 * 5 3 2 7 7 H 1.09003 * 111.00759 * 153.57487 * 6 5 3 8 8 C 1.53000 * 111.03721 * 277.41056 * 6 5 3 9 9 C 1.54911 * 101.58376 * 35.49715 * 6 5 3 10 10 N 1.47024 * 109.88003 * 178.84212 * 3 2 1 11 11 S 1.65594 * 125.64742 * 298.39249 * 10 3 2 12 12 O 1.42098 * 106.40682 * 24.64447 * 11 10 3 13 13 O 1.42107 * 106.40064 * 157.56511 * 11 10 3 14 14 N 1.65601 * 107.21827 * 271.10052 * 11 10 3 15 15 C 1.46499 * 120.00155 * 269.99935 * 14 11 10 16 16 C 1.46507 * 119.99557 * 90.00504 * 14 11 10 17 17 H 1.08994 * 109.47244 * 0.02562 * 16 14 11 18 18 C 1.52998 * 109.46872 * 239.99553 * 16 14 11 19 19 C 1.50705 * 109.46878 * 120.00173 * 16 14 11 20 20 H 1.07994 * 120.00271 * 359.97438 * 19 16 14 21 21 C 1.37877 * 119.99567 * 179.97438 * 19 16 14 22 22 N 1.31519 * 120.00287 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99842 * 179.97438 * 21 19 16 24 24 H 1.48503 * 109.47049 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46698 * 120.00173 * 23 21 19 26 26 H 1.48494 * 109.47257 * 240.00239 * 23 21 19 27 27 H 1.08997 * 109.46736 * 186.78910 * 1 2 3 28 28 H 1.09006 * 109.46851 * 306.78281 * 1 2 3 29 29 H 1.08995 * 109.47399 * 66.78924 * 1 2 3 30 30 H 1.08998 * 109.46792 * 240.00238 * 2 1 3 31 31 H 1.08994 * 109.47072 * 120.00226 * 2 1 3 32 32 H 1.08995 * 110.72331 * 100.02493 * 5 3 2 33 33 H 1.09001 * 110.86676 * 336.82043 * 5 3 2 34 34 H 1.09001 * 109.47313 * 173.66374 * 8 6 5 35 35 H 1.09000 * 109.47206 * 293.67105 * 8 6 5 36 36 H 1.09002 * 109.47076 * 53.67020 * 8 6 5 37 37 H 1.09008 * 110.36297 * 81.83194 * 9 6 5 38 38 H 1.08997 * 110.36852 * 204.15259 * 9 6 5 39 39 H 1.09005 * 109.46855 * 90.00392 * 15 14 11 40 40 H 1.08996 * 109.47159 * 209.99954 * 15 14 11 41 41 H 1.08994 * 109.47388 * 330.00010 * 15 14 11 42 42 H 1.08999 * 109.47462 * 300.00741 * 18 16 14 43 43 H 1.09004 * 109.47197 * 59.99936 * 18 16 14 44 44 H 1.08996 * 109.47260 * 180.02562 * 18 16 14 45 45 H 0.96995 * 119.99844 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6466 1.9746 0.8662 5 6 1.6012 2.1544 -1.2970 6 6 2.8356 3.0255 -1.6500 7 1 2.8845 3.2178 -2.7219 8 6 2.8269 4.3360 -0.8606 9 6 4.0012 2.1116 -1.1961 10 7 3.5099 1.4532 0.0279 11 16 4.4568 0.8283 1.2342 12 8 3.6787 -0.1713 1.8781 13 8 5.7278 0.5698 0.6535 14 7 4.6880 2.0311 2.3488 15 6 5.8303 2.9392 2.2202 16 6 3.7501 2.1869 3.4634 17 1 2.9724 1.4265 3.3929 18 6 3.1126 3.5764 3.4031 19 6 4.4891 2.0294 4.7674 20 1 5.5509 1.8326 4.7660 21 6 3.8094 2.1367 5.9622 22 7 2.5161 2.3759 5.9640 23 14 4.7251 1.9409 7.5785 24 1 6.1611 1.6790 7.3053 25 1 4.5926 3.1862 8.3765 26 1 4.1498 0.8023 8.3386 27 1 -0.3633 -1.0205 0.1215 28 1 -0.3633 0.6154 0.8231 29 1 -0.3634 0.4050 -0.9444 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.7267 2.7797 -1.1169 33 1 1.4004 1.4316 -2.0878 34 1 3.7566 4.8755 -1.0416 35 1 1.9835 4.9477 -1.1811 36 1 2.7343 4.1186 0.2035 37 1 4.2223 1.3696 -1.9634 38 1 4.8872 2.7075 -0.9769 39 1 5.5429 3.8018 1.6190 40 1 6.1418 3.2736 3.2097 41 1 6.6562 2.4179 1.7363 42 1 3.8907 4.3365 3.4739 43 1 2.5782 3.6904 2.4599 44 1 2.4152 3.6925 4.2326 45 1 2.0380 2.4510 6.8045 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407975695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:46 Heat of formation + Delta-G solvation = -105.683094 kcal Electronic energy + Delta-G solvation = -25755.297204 eV Core-core repulsion = 22319.350381 eV Total energy + Delta-G solvation = -3435.946824 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.15717 -38.38687 -37.89564 -36.90510 -34.59048 -34.51725 -32.87701 -30.93815 -28.99460 -27.43484 -27.21154 -26.99271 -24.46257 -22.58280 -22.07993 -20.93770 -19.77322 -18.78980 -18.58939 -18.16079 -17.11840 -16.70904 -16.22820 -15.59344 -15.42969 -15.20852 -14.88030 -14.66743 -14.43053 -14.35338 -13.82004 -13.72743 -13.65958 -13.40105 -13.24751 -13.14998 -13.03489 -13.00340 -12.79242 -12.75249 -12.64125 -12.54521 -12.29382 -12.14835 -12.14305 -11.93312 -11.73714 -11.63829 -11.47629 -11.19964 -11.12969 -10.52650 -9.94396 -9.65335 -8.13539 -6.27060 -0.37634 1.39408 1.42263 1.52789 2.04188 2.41025 2.57067 3.14549 3.24208 3.60177 3.79221 3.94218 4.11276 4.17918 4.31752 4.36905 4.52693 4.58768 4.69140 4.71463 4.72770 4.76182 4.81138 4.95753 4.96271 4.99091 5.02870 5.07644 5.14115 5.19063 5.20623 5.23520 5.27672 5.31106 5.41720 5.48165 5.56077 5.59676 5.62540 5.77803 5.87535 6.13840 6.28484 6.80367 7.41679 8.90779 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.005643 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.201251 B = 4961.052357 C = 5182.242542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.160 4.160 3 C 0.149 3.851 4 H 0.054 0.946 5 C -0.108 4.108 6 C -0.092 4.092 7 H 0.118 0.882 8 C -0.146 4.146 9 C 0.115 3.885 10 N -1.012 6.012 11 S 2.800 3.200 12 O -1.006 7.006 13 O -1.011 7.011 14 N -0.998 5.998 15 C 0.094 3.906 16 C 0.278 3.722 17 H 0.022 0.978 18 C -0.129 4.129 19 C -0.540 4.540 20 H 0.055 0.945 21 C 0.019 3.981 22 N -0.912 5.912 23 Si 0.955 3.045 24 H -0.271 1.271 25 H -0.273 1.273 26 H -0.284 1.284 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.039 0.961 43 H 0.032 0.968 44 H 0.066 0.934 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 4.267 -17.143 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.199 4.199 3 C 0.043 3.957 4 H 0.072 0.928 5 C -0.146 4.146 6 C -0.111 4.111 7 H 0.136 0.864 8 C -0.203 4.203 9 C -0.009 4.009 10 N -0.853 5.853 11 S 2.812 3.188 12 O -0.990 6.990 13 O -0.995 6.995 14 N -0.839 5.839 15 C -0.051 4.051 16 C 0.173 3.827 17 H 0.039 0.961 18 C -0.188 4.188 19 C -0.579 4.579 20 H 0.073 0.927 21 C -0.181 4.181 22 N -0.551 5.551 23 Si 0.781 3.219 24 H -0.195 1.195 25 H -0.198 1.198 26 H -0.210 1.210 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.084 0.916 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.289 3.368 -16.902 17.385 hybrid contribution 0.371 -0.057 1.541 1.586 sum -1.918 3.311 -15.361 15.830 Atomic orbital electron populations 1.21662 0.93304 1.02096 1.02710 1.22280 0.98257 0.96638 1.02752 1.21489 0.77879 0.96112 1.00253 0.92771 1.22770 0.98362 0.98671 0.94845 1.22369 0.93094 0.94047 1.01618 0.86400 1.21786 1.02604 0.96328 0.99557 1.22312 0.97919 0.95444 0.85254 1.58999 1.16716 1.75667 1.33945 1.01028 0.72085 0.73629 0.72067 1.93511 1.71911 1.57727 1.75876 1.93483 1.42153 1.84983 1.78857 1.57662 1.36362 1.50422 1.39443 1.21428 0.87207 0.93320 1.03177 1.18343 0.86859 0.94490 0.82985 0.96058 1.21866 1.00040 0.97250 0.99680 1.21679 0.95431 1.49199 0.91620 0.92691 1.25626 0.95715 0.94669 1.02108 1.69980 1.08271 1.49403 1.27457 0.85557 0.78845 0.77845 0.79687 1.19531 1.19816 1.20961 0.92408 0.93368 0.90046 0.90911 0.92674 0.88818 0.88745 0.91922 0.91006 0.94499 0.90548 0.90926 0.91635 0.90965 0.91341 0.94200 0.94903 0.91565 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.60 71.98 0.69 -2.52 16 2 C -0.16 -4.65 5.33 30.60 0.16 -4.49 16 3 C 0.15 4.15 2.78 45.34 0.13 4.27 16 4 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 5 C -0.11 -1.93 5.07 31.78 0.16 -1.76 16 6 C -0.09 -1.53 3.72 -9.40 -0.03 -1.57 16 7 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 8 C -0.15 -2.66 9.24 71.98 0.67 -1.99 16 9 C 0.12 2.65 6.43 86.86 0.56 3.21 16 10 N -1.01 -31.54 3.44 -484.26 -1.67 -33.20 16 11 S 2.80 116.04 6.31 -56.49 -0.36 115.69 16 12 O -1.01 -49.33 13.82 -128.00 -1.77 -51.10 16 13 O -1.01 -43.60 16.31 -128.00 -2.09 -45.69 16 14 N -1.00 -42.76 3.12 -520.44 -1.62 -44.38 16 15 C 0.09 3.40 9.66 127.77 1.23 4.63 16 16 C 0.28 13.95 2.62 44.24 0.12 14.07 16 17 H 0.02 1.23 6.91 -2.39 -0.02 1.22 16 18 C -0.13 -5.87 8.97 71.98 0.65 -5.22 16 19 C -0.54 -29.81 7.99 25.60 0.20 -29.60 16 20 H 0.05 3.04 7.33 -2.91 -0.02 3.02 16 21 C 0.02 1.03 5.30 84.65 0.45 1.48 16 22 N -0.91 -51.60 11.32 21.45 0.24 -51.36 16 23 Si 0.95 43.81 29.54 68.60 2.03 45.83 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.08 1.37 7.50 -2.39 -0.02 1.35 16 30 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 31 H 0.05 2.09 5.66 -2.39 -0.01 2.08 16 32 H 0.09 1.43 8.05 -2.39 -0.02 1.41 16 33 H 0.09 1.36 7.74 -2.39 -0.02 1.34 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.04 0.89 7.45 -2.39 -0.02 0.87 16 37 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.07 1.64 8.05 -2.39 -0.02 1.62 16 39 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.07 2.74 7.02 -2.39 -0.02 2.72 16 41 H 0.07 2.34 7.02 -2.39 -0.02 2.32 16 42 H 0.04 1.70 7.67 -2.39 -0.02 1.69 16 43 H 0.03 1.30 7.77 -2.39 -0.02 1.28 16 44 H 0.07 3.38 6.07 -2.39 -0.01 3.36 16 45 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -68.93 357.69 0.69 -68.24 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.95 Total: 15.46 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 4.98 Total: -19.50 kcal Atomic # 7 Polarization: -125.89 SS G_CDS: -3.05 Total: -128.94 kcal Atomic # 8 Polarization: -92.93 SS G_CDS: -3.86 Total: -96.79 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 116.04 SS G_CDS: -0.36 Total: 115.69 kcal Total: -68.93 0.69 -68.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407975695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.438 kcal (2) G-P(sol) polarization free energy of solvation -68.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds