Wall clock time and date at job start Tue Mar 31 2020 09:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46947 * 2 1 4 4 H 1.09003 * 109.58607 * 65.45788 * 3 2 1 5 5 C 1.53195 * 109.58699 * 305.03240 * 3 2 1 6 6 C 1.53041 * 109.30932 * 185.57580 * 5 3 2 7 7 C 1.53040 * 109.53965 * 61.36584 * 6 5 3 8 8 C 1.53185 * 109.31208 * 298.63391 * 7 6 5 9 9 N 1.46924 * 109.58579 * 185.73897 * 3 2 1 10 10 S 1.65593 * 120.63291 * 353.42155 * 9 3 2 11 11 O 1.42094 * 106.40303 * 198.09514 * 10 9 3 12 12 O 1.42097 * 106.40169 * 331.01920 * 10 9 3 13 13 N 1.65599 * 107.21812 * 84.55597 * 10 9 3 14 14 C 1.46507 * 120.00211 * 270.00038 * 13 10 9 15 15 C 1.46500 * 119.99973 * 90.00257 * 13 10 9 16 16 H 1.08997 * 109.47051 * 359.97438 * 15 13 10 17 17 C 1.53002 * 109.47099 * 119.99966 * 15 13 10 18 18 C 1.50699 * 109.47280 * 240.00038 * 15 13 10 19 19 H 1.08003 * 119.99729 * 359.97438 * 18 15 13 20 20 C 1.37881 * 120.00352 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99972 * 180.02562 * 20 18 15 22 22 Si 1.86797 * 119.99603 * 359.97438 * 20 18 15 23 23 H 1.48498 * 109.46986 * 90.00590 * 22 20 18 24 24 H 1.48503 * 109.46902 * 210.00075 * 22 20 18 25 25 H 1.48493 * 109.47438 * 330.00519 * 22 20 18 26 26 H 1.08991 * 109.46910 * 66.05367 * 1 2 3 27 27 H 1.08999 * 109.46578 * 186.05466 * 1 2 3 28 28 H 1.09000 * 109.46622 * 306.04903 * 1 2 3 29 29 H 1.08993 * 109.47219 * 240.00453 * 2 1 3 30 30 H 1.09001 * 109.46976 * 119.99765 * 2 1 3 31 31 H 1.08996 * 109.49572 * 305.52907 * 5 3 2 32 32 H 1.09006 * 109.49763 * 65.62485 * 5 3 2 33 33 H 1.09000 * 109.46334 * 301.34331 * 6 5 3 34 34 H 1.08997 * 109.45587 * 181.38434 * 6 5 3 35 35 H 1.08995 * 109.50170 * 178.68006 * 7 6 5 36 36 H 1.09007 * 109.49317 * 58.58347 * 7 6 5 37 37 H 1.08997 * 109.58580 * 294.84687 * 8 7 6 38 38 H 1.09005 * 109.70820 * 174.48884 * 8 7 6 39 39 H 1.09000 * 109.46805 * 90.00096 * 14 13 10 40 40 H 1.09000 * 109.47078 * 210.00150 * 14 13 10 41 41 H 1.08996 * 109.46740 * 329.99918 * 14 13 10 42 42 H 1.09008 * 109.46971 * 179.97438 * 17 15 13 43 43 H 1.09001 * 109.47479 * 299.99838 * 17 15 13 44 44 H 1.08997 * 109.47142 * 60.00088 * 17 15 13 45 45 H 0.96996 * 119.99654 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7597 1.9292 0.9342 5 6 1.4301 2.2029 -1.1818 6 6 2.0491 3.6004 -1.2582 7 6 3.5574 3.4803 -1.4878 8 6 4.1914 2.7344 -0.3096 9 7 3.5027 1.4478 -0.1384 10 16 4.3588 0.0308 -0.1029 11 8 5.7083 0.3839 0.1675 12 8 3.6134 -0.8681 0.7067 13 7 4.3371 -0.5935 -1.6366 14 6 3.2640 -1.5053 -2.0413 15 6 5.3909 -0.2342 -2.5887 16 1 6.0943 0.4481 -2.1116 17 6 6.1284 -1.4985 -3.0342 18 6 4.7757 0.4378 -3.7891 19 1 3.7065 0.5823 -3.8380 20 6 5.5775 0.8671 -4.8253 21 7 5.0406 1.4540 -5.8726 22 14 7.4267 0.6164 -4.7409 23 1 7.7764 -0.6951 -5.3431 24 1 8.1081 1.7025 -5.4901 25 1 7.8655 0.6426 -3.3225 26 1 -0.3633 0.4171 -0.9391 27 1 -0.3632 -1.0220 0.1084 28 1 -0.3632 0.6048 0.8309 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6350 1.6632 -2.1063 32 1 0.3525 2.2894 -1.0416 33 1 1.8652 4.1307 -0.3238 34 1 1.5990 4.1523 -2.0833 35 1 3.9941 4.4759 -1.5655 36 1 3.7422 2.9285 -2.4096 37 1 4.0864 3.3286 0.5981 38 1 5.2482 2.5591 -0.5113 39 1 2.4376 -0.9307 -2.4596 40 1 3.6410 -2.1994 -2.7924 41 1 2.9153 -2.0640 -1.1728 42 1 6.9123 -1.2312 -3.7430 43 1 6.5735 -1.9846 -2.1661 44 1 5.4248 -2.1805 -3.5115 45 1 5.6047 1.7557 -6.6017 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407978282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:38 Heat of formation + Delta-G solvation = -61.377230 kcal Electronic energy + Delta-G solvation = -26406.504537 eV Core-core repulsion = 22972.478960 eV Total energy + Delta-G solvation = -3434.025577 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.72814 -37.05387 -36.45275 -35.36045 -33.64657 -32.52083 -32.09852 -30.05805 -29.06037 -25.89658 -25.04182 -24.29466 -23.80730 -21.06661 -20.92006 -20.04850 -18.23869 -17.56688 -16.66043 -16.36498 -15.88714 -15.09540 -14.71457 -14.53766 -14.23369 -13.95972 -13.63074 -13.61725 -13.27626 -12.99469 -12.77938 -12.56382 -12.32293 -12.24824 -12.12157 -12.02356 -11.48577 -11.43602 -11.40567 -11.28042 -11.14025 -11.01269 -10.90689 -10.57765 -10.42733 -10.26819 -10.17116 -10.05918 -9.67898 -9.54214 -9.40310 -8.69124 -8.59988 -8.07958 -6.18014 -4.18384 1.16371 3.21171 3.33806 3.34740 3.37446 3.99099 4.31711 4.75360 4.81453 5.08303 5.13216 5.16606 5.29793 5.40026 5.49467 5.50445 5.59004 5.63138 5.76239 5.85037 5.93932 5.99586 6.05266 6.07555 6.15433 6.21317 6.22411 6.23769 6.27607 6.36118 6.40652 6.49662 6.55145 6.56236 6.60430 6.77719 6.83832 6.87000 6.99877 7.30540 7.39254 7.63356 8.42087 8.85798 9.43449 10.94102 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015920 B = 0.007390 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.418810 B = 3787.977042 C = 4281.860811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.197 4.197 3 C 0.164 3.836 4 H 0.068 0.932 5 C -0.130 4.130 6 C -0.111 4.111 7 C -0.140 4.140 8 C 0.127 3.873 9 N -1.000 6.000 10 S 2.782 3.218 11 O -0.987 6.987 12 O -0.989 6.989 13 N -0.984 5.984 14 C 0.096 3.904 15 C 0.240 3.760 16 H 0.054 0.946 17 C -0.160 4.160 18 C -0.521 4.521 19 H 0.083 0.917 20 C 0.077 3.923 21 N -0.893 5.893 22 Si 0.874 3.126 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.262 1.262 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.034 0.966 44 H 0.059 0.941 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.962 0.511 9.684 11.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.235 4.235 3 C 0.058 3.942 4 H 0.086 0.914 5 C -0.169 4.169 6 C -0.149 4.149 7 C -0.179 4.179 8 C 0.002 3.998 9 N -0.838 5.838 10 S 2.793 3.207 11 O -0.971 6.971 12 O -0.974 6.974 13 N -0.825 5.825 14 C -0.050 4.050 15 C 0.135 3.865 16 H 0.072 0.928 17 C -0.219 4.219 18 C -0.560 4.560 19 H 0.101 0.899 20 C -0.127 4.127 21 N -0.530 5.530 22 Si 0.704 3.296 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.187 1.187 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.141 0.859 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.475 0.218 10.290 12.160 hybrid contribution 0.810 0.193 -0.725 1.105 sum -5.665 0.411 9.565 11.124 Atomic orbital electron populations 1.21689 0.95163 1.01544 1.01510 1.23188 0.97353 0.95755 1.07186 1.20910 0.78626 0.96607 0.98028 0.91393 1.21997 0.99096 0.96464 0.99330 1.21405 0.96031 0.96554 1.00878 1.21951 0.95201 1.00510 1.00218 1.21317 0.96716 0.83819 0.97947 1.58199 1.15518 1.21788 1.88335 1.01843 0.72455 0.72819 0.73549 1.93541 1.34999 1.84047 1.84504 1.93485 1.71781 1.64327 1.67766 1.57483 1.35214 1.58544 1.31262 1.21413 0.89748 0.93262 1.00565 1.19054 0.85196 0.92890 0.89358 0.92797 1.22437 0.99935 1.00035 0.99504 1.21180 0.96192 1.37910 1.00749 0.89929 1.24875 0.98138 0.94530 0.95115 1.69870 1.35647 1.39697 1.07815 0.87068 0.86533 0.77098 0.78927 1.20404 1.22210 1.18675 0.92668 0.92599 0.93005 0.90063 0.85899 0.90620 0.91481 0.92815 0.92137 0.91606 0.89002 0.92237 0.89274 0.93010 0.90633 0.91532 0.93309 0.94734 0.92246 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.23 37.16 0.34 -1.24 16 2 C -0.20 -2.76 3.98 -26.73 -0.11 -2.87 16 3 C 0.16 2.33 3.08 -67.60 -0.21 2.12 16 4 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 5 C -0.13 -1.76 4.69 -26.61 -0.12 -1.89 16 6 C -0.11 -1.48 5.88 -26.69 -0.16 -1.63 16 7 C -0.14 -2.15 6.08 -26.62 -0.16 -2.31 16 8 C 0.13 2.01 6.41 -3.71 -0.02 1.98 16 9 N -1.00 -16.51 3.35 -106.47 -0.36 -16.87 16 10 S 2.78 52.96 5.64 -107.50 -0.61 52.36 16 11 O -0.99 -21.59 15.26 -57.17 -0.87 -22.46 16 12 O -0.99 -18.64 12.36 -57.17 -0.71 -19.35 16 13 N -0.98 -19.34 3.12 -115.85 -0.36 -19.71 16 14 C 0.10 1.62 8.04 59.85 0.48 2.11 16 15 C 0.24 5.44 2.21 -69.08 -0.15 5.28 16 16 H 0.05 1.31 5.97 -51.93 -0.31 1.00 16 17 C -0.16 -3.41 8.65 37.16 0.32 -3.09 16 18 C -0.52 -13.23 8.95 -34.44 -0.31 -13.54 16 19 H 0.08 2.24 7.89 -52.48 -0.41 1.83 16 20 C 0.08 2.05 5.45 -17.82 -0.10 1.95 16 21 N -0.89 -25.41 13.96 55.43 0.77 -24.64 16 22 Si 0.87 20.95 24.37 -169.99 -4.14 16.80 16 23 H -0.28 -6.48 6.87 56.52 0.39 -6.09 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.26 -6.17 6.53 56.52 0.37 -5.81 16 26 H 0.05 0.59 6.85 -51.93 -0.36 0.23 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.21 2.97 -51.93 -0.15 1.05 16 30 H 0.12 1.91 5.48 -52.37 -0.29 1.63 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 0.77 6.84 -51.93 -0.36 0.42 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.53 6.98 -51.93 -0.36 1.17 16 39 H 0.05 0.85 7.04 -51.93 -0.37 0.49 16 40 H 0.08 1.26 6.43 -51.93 -0.33 0.93 16 41 H 0.07 1.01 6.48 -51.93 -0.34 0.67 16 42 H 0.05 1.08 3.27 -51.92 -0.17 0.91 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 1.18 6.66 -51.93 -0.35 0.83 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -29.44 333.80 -8.64 -38.08 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.20 Total: 3.86 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.19 Total: -13.11 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 0.06 Total: -61.21 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -1.58 Total: -41.81 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.14 Total: 16.80 kcal Atomic # 16 Polarization: 52.96 SS G_CDS: -0.61 Total: 52.36 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.44 -8.64 -38.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407978282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.298 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds