Wall clock time and date at job start Tue Mar 31 2020 08:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46967 * 239.99903 * 2 1 3 5 5 C 1.52999 * 109.47120 * 185.53873 * 4 2 1 6 6 H 1.08996 * 109.47030 * 305.20224 * 5 4 2 7 7 C 1.50704 * 109.47130 * 65.20343 * 5 4 2 8 8 N 1.34770 * 120.00097 * 208.36977 * 7 5 4 9 9 O 1.21276 * 119.99572 * 28.37608 * 7 5 4 10 10 C 1.50697 * 109.47219 * 185.20485 * 5 4 2 11 11 O 1.21290 * 119.99942 * 359.37826 * 10 5 4 12 12 N 1.34775 * 120.00176 * 179.37904 * 10 5 4 13 13 C 1.39942 * 120.00180 * 184.18899 * 12 10 5 14 14 C 1.39294 * 119.94408 * 321.23898 * 13 12 10 15 15 C 1.38482 * 120.43221 * 179.76450 * 14 13 12 16 16 C 1.37691 * 120.31728 * 0.51338 * 15 14 13 17 17 C 1.40749 * 119.88333 * 359.74794 * 16 15 14 18 18 C 1.41409 * 120.20758 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99697 * 145.69239 * 18 17 16 20 20 C 1.39929 * 120.00021 * 325.69657 * 18 17 16 21 21 N 1.30835 * 119.99887 * 167.63924 * 20 18 17 22 22 Si 1.86801 * 120.00125 * 347.63555 * 20 18 17 23 23 H 1.48500 * 109.47019 * 86.86589 * 22 20 18 24 24 H 1.48500 * 109.47079 * 206.86784 * 22 20 18 25 25 H 1.48496 * 109.46984 * 326.86683 * 22 20 18 26 26 C 1.38237 * 119.95156 * 141.51567 * 13 12 10 27 27 H 1.09001 * 109.46760 * 55.15958 * 1 2 3 28 28 H 1.08997 * 109.47306 * 175.15803 * 1 2 3 29 29 H 1.08999 * 109.46613 * 295.16563 * 1 2 3 30 30 H 1.09002 * 109.46763 * 120.00135 * 2 1 3 31 31 H 1.08999 * 109.46934 * 60.00271 * 3 2 1 32 32 H 1.09000 * 109.46675 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47221 * 300.00296 * 3 2 1 34 34 H 1.09004 * 109.47245 * 305.54006 * 4 2 1 35 35 H 1.09000 * 109.46934 * 65.53546 * 4 2 1 36 36 H 0.97006 * 120.00085 * 5.02202 * 8 7 5 37 37 H 0.96994 * 120.00447 * 185.01491 * 8 7 5 38 38 H 0.97000 * 120.00219 * 4.17845 * 12 10 5 39 39 H 1.08003 * 119.78326 * 0.02562 * 14 13 12 40 40 H 1.07995 * 119.84715 * 180.26039 * 15 14 13 41 41 H 1.07998 * 120.05790 * 179.76294 * 16 15 14 42 42 H 0.96999 * 119.99870 * 179.97438 * 21 20 18 43 43 H 1.07999 * 120.15502 * 359.95706 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5637 -0.8430 -1.1816 6 1 4.0010 0.1449 -1.0378 7 6 3.9457 -1.7343 -0.0280 8 7 5.1297 -1.5630 0.5926 9 8 3.1877 -2.6058 0.3417 10 6 4.0777 -1.4375 -2.4674 11 8 3.3008 -1.7450 -3.3466 12 7 5.4007 -1.6274 -2.6405 13 6 5.8858 -2.0971 -3.8663 14 6 5.1781 -3.0712 -4.5668 15 6 5.6463 -3.5397 -5.7830 16 6 6.8231 -3.0547 -6.3083 17 6 7.5516 -2.0743 -5.6091 18 6 8.7607 -1.5710 -6.1424 19 1 9.0325 -0.5380 -5.9833 20 6 9.6050 -2.4115 -6.8765 21 7 10.5912 -1.9039 -7.5704 22 14 9.3242 -4.2583 -6.8655 23 1 8.3469 -4.6166 -7.9246 24 1 10.6098 -4.9560 -7.1216 25 1 8.7926 -4.6702 -5.5416 26 6 7.0693 -1.5979 -4.3772 27 1 -0.3633 0.5871 -0.8435 28 1 -0.3634 -1.0240 -0.0867 29 1 -0.3632 0.4370 0.9301 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1301 1.4423 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.5980 -1.7163 -1.3002 35 1 1.7599 -0.1534 -2.1364 36 1 5.7039 -0.8212 0.3457 37 1 5.4076 -2.1813 1.2863 38 1 6.0168 -1.4384 -1.9155 39 1 4.2561 -3.4605 -4.1609 40 1 5.0879 -4.2920 -6.3202 41 1 7.1862 -3.4259 -7.2552 42 1 11.1767 -2.4866 -8.0790 43 1 7.6205 -0.8454 -3.8330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412407182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:43 Heat of formation + Delta-G solvation = -75.823960 kcal Electronic energy + Delta-G solvation = -24750.269122 eV Core-core repulsion = 21180.173137 eV Total energy + Delta-G solvation = -3570.095986 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.86580 -39.18428 -37.57629 -36.46330 -34.66787 -33.97284 -33.22062 -31.51919 -30.32529 -28.76046 -27.38423 -25.30343 -25.09664 -22.57739 -21.30176 -21.17384 -19.96665 -19.65268 -17.95857 -17.69612 -17.37262 -16.93074 -15.99951 -15.63529 -15.19513 -14.98763 -14.68099 -14.41528 -14.16097 -14.02531 -13.68553 -13.45191 -12.88250 -12.70422 -12.67149 -12.44093 -12.31913 -12.03439 -11.77456 -11.70238 -11.14407 -10.98713 -10.83932 -10.81544 -10.77269 -10.61325 -10.32020 -10.19432 -9.99239 -9.82851 -9.59944 -9.38226 -9.00987 -7.71413 -7.28761 -6.91327 -4.53773 2.04091 2.39475 2.57726 2.79499 3.12098 3.18483 3.21729 3.29755 3.44666 3.97932 4.32210 4.48719 4.55798 4.61712 4.76799 4.89505 4.94414 5.15065 5.33857 5.44178 5.51737 5.63677 5.66513 5.77923 5.86455 5.97776 6.04405 6.19191 6.23150 6.27664 6.33557 6.45957 6.47828 6.65188 6.71834 6.95737 7.11709 7.24388 7.38798 7.60632 7.76277 7.81597 7.92555 8.02485 8.30875 8.38270 8.58756 8.78908 10.11823 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.026824 B = 0.003187 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.576014 B = 8782.488921 C = 8852.070778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 C -0.152 4.152 4 C -0.086 4.086 5 C -0.131 4.131 6 H 0.119 0.881 7 C 0.529 3.471 8 N -0.855 5.855 9 O -0.524 6.524 10 C 0.519 3.481 11 O -0.502 6.502 12 N -0.667 5.667 13 C 0.158 3.842 14 C -0.221 4.221 15 C -0.071 4.071 16 C -0.239 4.239 17 C 0.105 3.895 18 C -0.454 4.454 19 H 0.090 0.910 20 C 0.084 3.916 21 N -0.818 5.818 22 Si 0.913 3.087 23 H -0.268 1.268 24 H -0.293 1.293 25 H -0.249 1.249 26 C -0.223 4.223 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.402 0.598 37 H 0.405 0.595 38 H 0.398 0.602 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.284 0.716 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.941 4.367 15.595 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.209 4.209 4 C -0.124 4.124 5 C -0.156 4.156 6 H 0.137 0.863 7 C 0.312 3.688 8 N -0.420 5.420 9 O -0.398 6.398 10 C 0.304 3.696 11 O -0.375 6.375 12 N -0.312 5.312 13 C 0.067 3.933 14 C -0.242 4.242 15 C -0.090 4.090 16 C -0.258 4.258 17 C 0.102 3.898 18 C -0.483 4.483 19 H 0.108 0.892 20 C -0.134 4.134 21 N -0.443 5.443 22 Si 0.740 3.260 23 H -0.194 1.194 24 H -0.220 1.220 25 H -0.172 1.172 26 C -0.244 4.244 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.231 0.769 37 H 0.237 0.763 38 H 0.233 0.767 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.919 3.676 14.909 18.842 hybrid contribution 0.953 -0.440 0.419 1.131 sum -9.965 3.236 15.328 18.567 Atomic orbital electron populations 1.21778 0.94708 1.02099 1.01535 1.21172 0.96462 0.95899 0.98298 1.21949 1.00723 0.96161 1.02055 1.21375 0.89545 1.02986 0.98467 1.21697 1.01266 1.00447 0.92213 0.86313 1.20135 0.81356 0.84199 0.83062 1.43938 1.21196 1.34129 1.42769 1.90766 1.50307 1.33765 1.64989 1.19935 0.82548 0.79040 0.88075 1.90749 1.55424 1.48364 1.43010 1.43471 1.07148 1.65626 1.14952 1.17508 0.95006 0.95250 0.85531 1.20445 1.02650 1.02428 0.98629 1.20547 0.95551 0.98034 0.94846 1.21297 0.97494 1.05693 1.01352 1.17519 0.92658 0.90124 0.89522 1.19382 1.02111 0.99368 1.27438 0.89173 1.26081 0.94004 1.01826 0.91440 1.69653 1.14526 1.38636 1.21502 0.86336 0.76668 0.81676 0.81269 1.19365 1.22029 1.17203 1.20810 0.98807 1.07036 0.97768 0.92546 0.92384 0.92829 0.91077 0.92658 0.92887 0.92247 0.89726 0.89918 0.76943 0.76314 0.76711 0.87335 0.88276 0.87581 0.90523 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.19 37.16 0.34 -0.92 16 2 C -0.10 -0.94 2.79 -90.62 -0.25 -1.19 16 3 C -0.15 -1.15 8.96 37.16 0.33 -0.82 16 4 C -0.09 -1.01 3.20 -26.73 -0.09 -1.09 16 5 C -0.13 -1.49 2.41 -92.92 -0.22 -1.71 16 6 H 0.12 0.95 6.36 -51.93 -0.33 0.62 16 7 C 0.53 6.01 6.03 -10.99 -0.07 5.94 16 8 N -0.86 -5.96 8.53 31.22 0.27 -5.69 16 9 O -0.52 -8.05 16.41 5.56 0.09 -7.95 16 10 C 0.52 8.23 6.96 -10.99 -0.08 8.15 16 11 O -0.50 -9.95 13.60 5.55 0.08 -9.87 16 12 N -0.67 -10.55 5.25 -9.91 -0.05 -10.60 16 13 C 0.16 3.28 6.22 -83.76 -0.52 2.76 16 14 C -0.22 -4.88 8.68 -39.10 -0.34 -5.22 16 15 C -0.07 -1.59 10.02 -39.69 -0.40 -1.98 16 16 C -0.24 -5.76 7.21 -38.83 -0.28 -6.04 16 17 C 0.11 2.61 5.04 -106.85 -0.54 2.07 16 18 C -0.45 -12.02 9.58 -37.74 -0.36 -12.38 16 19 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 20 C 0.08 2.18 5.46 -17.34 -0.09 2.08 16 21 N -0.82 -21.68 13.93 55.55 0.77 -20.91 16 22 Si 0.91 20.75 24.55 -169.99 -4.17 16.57 16 23 H -0.27 -5.93 6.41 56.52 0.36 -5.57 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.25 -5.76 7.04 56.52 0.40 -5.36 16 26 C -0.22 -4.93 9.71 -38.69 -0.38 -5.30 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.74 6.89 -51.93 -0.36 0.38 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.35 6.48 -51.93 -0.34 0.02 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 1.19 7.67 -51.93 -0.40 0.79 16 35 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 36 H 0.40 1.61 8.72 -40.82 -0.36 1.25 16 37 H 0.41 2.44 8.93 -40.82 -0.36 2.07 16 38 H 0.40 4.76 8.21 -40.82 -0.34 4.42 16 39 H 0.11 2.40 6.50 -52.48 -0.34 2.06 16 40 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 41 H 0.11 2.55 4.68 -52.49 -0.25 2.30 16 42 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 43 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -32.62 349.83 -6.72 -39.34 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.04 Total: 9.50 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -2.94 Total: -15.65 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.99 Total: -37.21 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.17 Total: -17.83 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.17 Total: 16.57 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.62 -6.72 -39.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412407182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.480 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds