Wall clock time and date at job start Tue Mar 31 2020 08:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46967 * 239.99903 * 2 1 3 5 5 C 1.52999 * 109.47120 * 185.53873 * 4 2 1 6 6 H 1.08996 * 109.47030 * 305.20224 * 5 4 2 7 7 C 1.50704 * 109.47130 * 65.20343 * 5 4 2 8 8 N 1.34770 * 120.00097 * 208.36977 * 7 5 4 9 9 O 1.21276 * 119.99572 * 28.37608 * 7 5 4 10 10 C 1.50697 * 109.47219 * 185.20485 * 5 4 2 11 11 O 1.21290 * 119.99942 * 359.37826 * 10 5 4 12 12 N 1.34775 * 120.00176 * 179.37904 * 10 5 4 13 13 C 1.39942 * 120.00180 * 184.18899 * 12 10 5 14 14 C 1.39294 * 119.94408 * 321.23898 * 13 12 10 15 15 C 1.38482 * 120.43221 * 179.76450 * 14 13 12 16 16 C 1.37691 * 120.31728 * 0.51338 * 15 14 13 17 17 C 1.40749 * 119.88333 * 359.74794 * 16 15 14 18 18 C 1.41409 * 120.20758 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99697 * 145.69239 * 18 17 16 20 20 C 1.39929 * 120.00021 * 325.69657 * 18 17 16 21 21 N 1.30835 * 119.99887 * 167.63924 * 20 18 17 22 22 Si 1.86801 * 120.00125 * 347.63555 * 20 18 17 23 23 H 1.48500 * 109.47019 * 86.86589 * 22 20 18 24 24 H 1.48500 * 109.47079 * 206.86784 * 22 20 18 25 25 H 1.48496 * 109.46984 * 326.86683 * 22 20 18 26 26 C 1.38237 * 119.95156 * 141.51567 * 13 12 10 27 27 H 1.09001 * 109.46760 * 55.15958 * 1 2 3 28 28 H 1.08997 * 109.47306 * 175.15803 * 1 2 3 29 29 H 1.08999 * 109.46613 * 295.16563 * 1 2 3 30 30 H 1.09002 * 109.46763 * 120.00135 * 2 1 3 31 31 H 1.08999 * 109.46934 * 60.00271 * 3 2 1 32 32 H 1.09000 * 109.46675 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47221 * 300.00296 * 3 2 1 34 34 H 1.09004 * 109.47245 * 305.54006 * 4 2 1 35 35 H 1.09000 * 109.46934 * 65.53546 * 4 2 1 36 36 H 0.97006 * 120.00085 * 5.02202 * 8 7 5 37 37 H 0.96994 * 120.00447 * 185.01491 * 8 7 5 38 38 H 0.97000 * 120.00219 * 4.17845 * 12 10 5 39 39 H 1.08003 * 119.78326 * 0.02562 * 14 13 12 40 40 H 1.07995 * 119.84715 * 180.26039 * 15 14 13 41 41 H 1.07998 * 120.05790 * 179.76294 * 16 15 14 42 42 H 0.96999 * 119.99870 * 179.97438 * 21 20 18 43 43 H 1.07999 * 120.15502 * 359.95706 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5637 -0.8430 -1.1816 6 1 4.0010 0.1449 -1.0378 7 6 3.9457 -1.7343 -0.0280 8 7 5.1297 -1.5630 0.5926 9 8 3.1877 -2.6058 0.3417 10 6 4.0777 -1.4375 -2.4674 11 8 3.3008 -1.7450 -3.3466 12 7 5.4007 -1.6274 -2.6405 13 6 5.8858 -2.0971 -3.8663 14 6 5.1781 -3.0712 -4.5668 15 6 5.6463 -3.5397 -5.7830 16 6 6.8231 -3.0547 -6.3083 17 6 7.5516 -2.0743 -5.6091 18 6 8.7607 -1.5710 -6.1424 19 1 9.0325 -0.5380 -5.9833 20 6 9.6050 -2.4115 -6.8765 21 7 10.5912 -1.9039 -7.5704 22 14 9.3242 -4.2583 -6.8655 23 1 8.3469 -4.6166 -7.9246 24 1 10.6098 -4.9560 -7.1216 25 1 8.7926 -4.6702 -5.5416 26 6 7.0693 -1.5979 -4.3772 27 1 -0.3633 0.5871 -0.8435 28 1 -0.3634 -1.0240 -0.0867 29 1 -0.3632 0.4370 0.9301 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1301 1.4423 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.5980 -1.7163 -1.3002 35 1 1.7599 -0.1534 -2.1364 36 1 5.7039 -0.8212 0.3457 37 1 5.4076 -2.1813 1.2863 38 1 6.0168 -1.4384 -1.9155 39 1 4.2561 -3.4605 -4.1609 40 1 5.0879 -4.2920 -6.3202 41 1 7.1862 -3.4259 -7.2552 42 1 11.1767 -2.4866 -8.0790 43 1 7.6205 -0.8454 -3.8330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412407182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:42 Heat of formation + Delta-G solvation = -99.728813 kcal Electronic energy + Delta-G solvation = -24751.305715 eV Core-core repulsion = 21180.173137 eV Total energy + Delta-G solvation = -3571.132578 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.02852 -40.44179 -39.17387 -37.33039 -36.20083 -35.19630 -34.69739 -32.56521 -32.12305 -30.35107 -28.01012 -27.07567 -26.21211 -23.86718 -22.90253 -22.54802 -21.24776 -20.56588 -19.62601 -18.79924 -18.28664 -17.95744 -17.73025 -17.18158 -16.51177 -16.20320 -16.04374 -15.73344 -15.44508 -14.99963 -14.84392 -14.68761 -14.50655 -14.33339 -13.91914 -13.65411 -13.46096 -13.19636 -13.00932 -12.89317 -12.61646 -12.56005 -12.42290 -11.98203 -11.77140 -11.65423 -11.61600 -11.57411 -11.31646 -11.16083 -11.02810 -10.76187 -10.68181 -9.55045 -8.99178 -8.84874 -6.53153 0.54044 0.75177 1.22512 1.30155 1.40487 1.47545 1.53397 2.03969 2.13595 2.47542 2.64036 3.38312 3.44850 3.55456 3.84052 4.04079 4.08724 4.15480 4.27413 4.41477 4.49928 4.57832 4.74705 4.79041 4.81405 4.86973 4.92551 4.96020 5.03486 5.06979 5.12579 5.29651 5.34604 5.44462 5.50508 5.53205 5.64566 5.79478 5.81180 5.91736 6.16017 6.29946 6.33316 6.45733 6.67659 6.82678 7.05401 7.19793 8.23412 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.026824 B = 0.003187 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.576014 B = 8782.488921 C = 8852.070778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.085 4.085 5 C -0.120 4.120 6 H 0.162 0.838 7 C 0.530 3.470 8 N -0.831 5.831 9 O -0.568 6.568 10 C 0.518 3.482 11 O -0.544 6.544 12 N -0.656 5.656 13 C 0.167 3.833 14 C -0.223 4.223 15 C -0.074 4.074 16 C -0.254 4.254 17 C 0.088 3.912 18 C -0.482 4.482 19 H 0.063 0.937 20 C 0.050 3.950 21 N -0.856 5.856 22 Si 0.962 3.038 23 H -0.260 1.260 24 H -0.279 1.279 25 H -0.256 1.256 26 C -0.223 4.223 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.420 0.580 37 H 0.415 0.585 38 H 0.419 0.581 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.292 0.708 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.422 4.721 17.597 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.123 4.123 5 C -0.145 4.145 6 H 0.179 0.821 7 C 0.313 3.687 8 N -0.396 5.396 9 O -0.446 6.446 10 C 0.305 3.695 11 O -0.420 6.420 12 N -0.303 5.303 13 C 0.074 3.926 14 C -0.244 4.244 15 C -0.093 4.093 16 C -0.274 4.274 17 C 0.085 3.915 18 C -0.512 4.512 19 H 0.081 0.919 20 C -0.164 4.164 21 N -0.483 5.483 22 Si 0.787 3.213 23 H -0.185 1.185 24 H -0.206 1.206 25 H -0.180 1.180 26 C -0.244 4.244 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.252 0.748 37 H 0.247 0.753 38 H 0.258 0.742 39 H 0.127 0.873 40 H 0.142 0.858 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.346 4.070 16.957 20.804 hybrid contribution 0.953 -0.496 -0.083 1.078 sum -10.393 3.574 16.873 20.137 Atomic orbital electron populations 1.21799 0.94500 1.01506 1.02474 1.21114 0.96713 0.96883 0.96504 1.21953 1.01610 0.94490 1.02711 1.21336 0.89852 1.01532 0.99570 1.21684 1.01031 1.02076 0.89661 0.82084 1.20083 0.82059 0.83494 0.83102 1.43747 1.19685 1.34418 1.41779 1.90763 1.51956 1.35522 1.66379 1.20680 0.81848 0.77929 0.89047 1.90735 1.56390 1.49959 1.44894 1.43366 1.07845 1.65113 1.13973 1.17502 0.94091 0.94127 0.86930 1.20680 1.02568 1.02418 0.98722 1.20830 0.95045 0.98319 0.95074 1.21364 0.98289 1.06154 1.01560 1.17676 0.92350 0.90860 0.90635 1.19377 1.03633 0.98588 1.29588 0.91905 1.26689 0.93630 1.05084 0.90988 1.69683 1.15705 1.40064 1.22856 0.85575 0.77206 0.77613 0.80920 1.18511 1.20599 1.17952 1.20984 0.99301 1.06971 0.97138 0.92130 0.93728 0.91427 0.91813 0.91483 0.91490 0.92186 0.92823 0.90442 0.74793 0.75250 0.74233 0.87306 0.85783 0.87853 0.89731 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.19 71.99 0.66 -1.73 16 2 C -0.09 -1.60 2.79 -10.79 -0.03 -1.63 16 3 C -0.15 -1.80 8.96 71.98 0.65 -1.16 16 4 C -0.08 -1.90 3.20 30.59 0.10 -1.80 16 5 C -0.12 -2.42 2.41 -12.29 -0.03 -2.45 16 6 H 0.16 1.85 6.36 -2.39 -0.02 1.83 16 7 C 0.53 10.73 6.03 87.66 0.53 11.26 16 8 N -0.83 -8.61 8.53 -173.54 -1.48 -10.09 16 9 O -0.57 -16.84 16.41 -3.02 -0.05 -16.89 16 10 C 0.52 15.38 6.96 87.66 0.61 15.99 16 11 O -0.54 -21.08 13.60 -3.06 -0.04 -21.12 16 12 N -0.66 -19.02 5.25 -303.65 -1.59 -20.61 16 13 C 0.17 6.57 6.22 38.10 0.24 6.80 16 14 C -0.22 -9.51 8.68 22.58 0.20 -9.32 16 15 C -0.07 -3.20 10.02 22.20 0.22 -2.98 16 16 C -0.25 -12.08 7.21 22.75 0.16 -11.91 16 17 C 0.09 4.35 5.04 -21.31 -0.11 4.24 16 18 C -0.48 -26.10 9.58 23.46 0.22 -25.88 16 19 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 20 C 0.05 2.62 5.46 85.25 0.47 3.08 16 21 N -0.86 -46.29 13.93 21.82 0.30 -45.99 16 22 Si 0.96 42.50 24.55 68.60 1.68 44.19 16 23 H -0.26 -11.02 6.41 99.48 0.64 -10.38 16 24 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 25 H -0.26 -11.46 7.04 99.48 0.70 -10.76 16 26 C -0.22 -9.56 9.71 22.85 0.22 -9.34 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.21 6.89 -2.39 -0.02 1.19 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.60 6.48 -2.39 -0.02 0.58 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 1.54 7.67 -2.38 -0.02 1.52 16 35 H 0.08 1.80 7.96 -2.39 -0.02 1.78 16 36 H 0.42 1.44 8.72 -92.70 -0.81 0.63 16 37 H 0.41 3.59 8.93 -92.71 -0.83 2.76 16 38 H 0.42 8.49 8.21 -92.71 -0.76 7.73 16 39 H 0.11 4.68 6.50 -2.91 -0.02 4.66 16 40 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 41 H 0.10 4.90 4.68 -2.91 -0.01 4.89 16 42 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 43 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -72.84 349.83 1.53 -71.32 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -1.41 Total: 25.99 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 4.11 Total: -26.80 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -2.77 Total: -76.68 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.09 Total: -38.01 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.68 Total: 44.19 kcal Total: -72.84 1.53 -71.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412407182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.410 kcal (2) G-P(sol) polarization free energy of solvation -72.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds