Wall clock time and date at job start Tue Mar 31 2020 08:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47520 * 2 1 4 4 C 1.53001 * 109.47346 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47080 * 304.00942 * 4 3 2 6 6 N 1.46494 * 109.46968 * 64.00765 * 4 3 2 7 7 S 1.65603 * 120.00173 * 233.73499 * 6 4 3 8 8 O 1.42091 * 106.40514 * 176.34916 * 7 6 4 9 9 O 1.42101 * 106.40125 * 309.27148 * 7 6 4 10 10 N 1.65606 * 107.21677 * 62.80719 * 7 6 4 11 11 C 1.46494 * 120.00027 * 268.76217 * 10 7 6 12 12 C 1.46496 * 119.99819 * 88.76086 * 10 7 6 13 13 C 1.50702 * 109.47275 * 94.99911 * 12 10 7 14 14 H 1.07998 * 119.99717 * 0.02562 * 13 12 10 15 15 C 1.37873 * 119.99820 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00556 * 359.97438 * 15 13 12 17 17 Si 1.86810 * 119.99706 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47063 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47064 * 119.99695 * 17 15 13 20 20 H 1.48495 * 109.47129 * 240.00041 * 17 15 13 21 21 C 1.53002 * 109.47369 * 184.01350 * 4 3 2 22 22 C 1.53775 * 113.61480 * 174.33043 * 21 4 3 23 23 C 1.53782 * 87.08143 * 220.01342 * 22 21 4 24 24 C 1.53784 * 87.16970 * 25.39254 * 23 22 21 25 25 H 1.09010 * 109.47050 * 59.99080 * 1 2 3 26 26 H 1.08996 * 109.47555 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46663 * 299.99758 * 1 2 3 28 28 H 1.09000 * 109.46663 * 240.00242 * 2 1 3 29 29 H 1.09001 * 109.46790 * 120.01020 * 2 1 3 30 30 H 1.09005 * 109.46879 * 60.05493 * 3 2 1 31 31 H 1.08997 * 109.47694 * 300.05635 * 3 2 1 32 32 H 0.96999 * 120.00230 * 53.73955 * 6 4 3 33 33 H 1.09001 * 109.47601 * 94.77759 * 11 10 7 34 34 H 1.09005 * 109.46964 * 214.77701 * 11 10 7 35 35 H 1.09004 * 109.47504 * 334.77346 * 11 10 7 36 36 H 1.09000 * 109.47458 * 215.00062 * 12 10 7 37 37 H 1.09004 * 109.47384 * 335.00039 * 12 10 7 38 38 H 0.96998 * 120.00391 * 179.97438 * 16 15 13 39 39 H 1.09000 * 112.84601 * 305.52093 * 21 4 3 40 40 H 1.09003 * 113.61907 * 105.46402 * 22 21 4 41 41 H 1.09000 * 113.61509 * 334.56150 * 22 21 4 42 42 H 1.08998 * 113.61201 * 139.97757 * 23 22 21 43 43 H 1.08995 * 113.61081 * 270.80135 * 23 22 21 44 44 H 1.08997 * 113.61656 * 89.15586 * 24 23 22 45 45 H 1.09003 * 113.60864 * 220.06024 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9338 0.8674 0.8510 6 7 4.0578 0.8372 -1.2424 7 16 5.1336 -0.4204 -1.1839 8 8 5.3411 -0.8339 -2.5274 9 8 6.1884 -0.0066 -0.3264 10 7 4.3757 -1.6786 -0.4190 11 6 4.4930 -1.8306 1.0332 12 6 3.5878 -2.6397 -1.1948 13 6 4.4433 -3.8330 -1.5341 14 1 5.4710 -3.8718 -1.2044 15 6 3.9140 -4.8751 -2.2654 16 7 2.6624 -4.8281 -2.6664 17 14 4.9744 -6.3547 -2.6853 18 1 6.3349 -6.1647 -2.1213 19 1 4.3654 -7.5798 -2.1081 20 1 5.0659 -6.4953 -4.1607 21 6 4.0802 2.8813 0.1003 22 6 5.6075 2.9845 0.2465 23 6 5.3555 4.1156 1.2574 24 6 3.9826 3.4736 1.5180 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 1.6775 1.9559 0.8905 31 1 1.6760 1.9566 -0.8894 32 1 3.7507 1.1732 -2.0990 33 1 3.6389 -1.3580 1.5183 34 1 4.5144 -2.8905 1.2871 35 1 5.4131 -1.3566 1.3751 36 1 2.7288 -2.9637 -0.6073 37 1 3.2417 -2.1676 -2.1144 38 1 2.2902 -5.5611 -3.1812 39 1 3.6708 3.5307 -0.6734 40 1 6.1118 3.3149 -0.6617 41 1 6.0648 2.0988 0.6874 42 1 6.0216 4.0869 2.1197 43 1 5.2959 5.1037 0.8012 44 1 3.9948 2.7217 2.3071 45 1 3.1768 4.1983 1.6348 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416558813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:20 Heat of formation + Delta-G solvation = -78.242762 kcal Electronic energy + Delta-G solvation = -25170.364106 eV Core-core repulsion = 21735.607185 eV Total energy + Delta-G solvation = -3434.756921 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.35517 -36.52059 -36.06264 -35.36071 -35.08874 -32.94160 -32.41307 -28.82299 -27.75931 -25.71007 -25.32775 -25.02953 -22.33582 -21.93775 -20.89842 -19.55826 -18.76507 -17.21405 -16.63658 -16.37562 -16.09767 -15.38731 -15.06552 -14.93434 -14.60071 -14.25160 -13.63418 -13.35256 -13.23750 -12.91847 -12.49877 -12.31171 -12.20790 -12.16289 -12.06008 -11.64558 -11.63242 -11.46103 -11.36909 -11.14218 -11.05461 -11.03375 -10.85294 -10.68424 -10.57595 -10.47643 -10.42312 -10.34481 -10.17413 -9.99484 -9.69207 -9.05094 -8.43400 -8.02803 -6.05153 -4.08642 1.30193 3.31683 3.39451 3.44622 3.56473 4.17823 4.46059 4.53874 4.66734 4.67848 4.88056 5.02189 5.09940 5.12258 5.26088 5.30628 5.32020 5.53452 5.60731 5.69455 5.69971 5.71576 5.76821 5.85149 5.87903 5.93579 5.98618 6.06599 6.10208 6.14764 6.28419 6.31063 6.36608 6.52416 6.57195 6.61191 6.63043 7.17096 7.30723 7.46521 7.64956 7.92859 8.22960 8.94148 9.56611 11.03336 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.005047 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.974022 B = 5546.336639 C = 6396.920792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C -0.125 4.125 4 C 0.168 3.832 5 H 0.084 0.916 6 N -1.126 6.126 7 S 2.780 3.220 8 O -0.969 6.969 9 O -0.996 6.996 10 N -0.994 5.994 11 C 0.092 3.908 12 C 0.261 3.739 13 C -0.527 4.527 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.282 1.282 21 C -0.120 4.120 22 C -0.140 4.140 23 C -0.145 4.145 24 C -0.132 4.132 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.410 0.590 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.262 0.738 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 15.885 8.574 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C -0.164 4.164 4 C 0.060 3.940 5 H 0.102 0.898 6 N -0.883 5.883 7 S 2.787 3.213 8 O -0.952 6.952 9 O -0.980 6.980 10 N -0.837 5.837 11 C -0.054 4.054 12 C 0.139 3.861 13 C -0.567 4.567 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.535 5.535 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.208 1.208 21 C -0.141 4.141 22 C -0.177 4.177 23 C -0.182 4.182 24 C -0.170 4.170 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.243 0.757 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.493 15.690 8.312 17.818 hybrid contribution -0.129 -0.769 -0.605 0.987 sum -1.623 14.921 7.708 16.872 Atomic orbital electron populations 1.21727 0.96141 1.01778 1.00896 1.21627 0.95622 0.96126 1.03441 1.21955 0.94406 0.97791 1.02219 1.20727 0.94034 0.93145 0.86060 0.89786 1.56257 1.66264 1.52434 1.13304 1.01959 0.73537 0.72424 0.73332 1.93636 1.84538 1.81047 1.36003 1.93507 1.53034 1.82511 1.68927 1.57558 1.69002 1.41830 1.15290 1.21405 1.00027 1.03547 0.80457 1.18998 0.90602 0.86545 0.89959 1.21549 0.98353 1.02734 1.34054 0.92185 1.24918 0.95070 0.98526 0.95481 1.69923 1.13176 1.32688 1.37711 0.86483 0.80672 0.82233 0.78306 1.19669 1.21001 1.20840 1.22972 0.97197 0.96204 0.97688 1.23057 0.95631 0.99633 0.99401 1.22816 0.97405 0.98213 0.99772 1.22915 0.97462 0.99948 0.96694 0.93141 0.92523 0.93410 0.90747 0.91810 0.91294 0.91658 0.75694 0.94252 0.90619 0.91467 0.94704 0.94645 0.92804 0.89198 0.92000 0.88062 0.91660 0.90694 0.89980 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.37 16 2 C -0.13 -1.68 5.81 -26.74 -0.16 -1.84 16 3 C -0.12 -1.33 4.87 -26.73 -0.13 -1.46 16 4 C 0.17 2.01 2.02 -67.93 -0.14 1.88 16 5 H 0.08 1.04 7.00 -51.93 -0.36 0.68 16 6 N -1.13 -16.15 4.73 -4.89 -0.02 -16.17 16 7 S 2.78 53.64 5.91 -107.50 -0.64 53.00 16 8 O -0.97 -23.18 17.15 -57.17 -0.98 -24.16 16 9 O -1.00 -19.67 14.76 -57.17 -0.84 -20.52 16 10 N -0.99 -19.81 3.23 -123.05 -0.40 -20.21 16 11 C 0.09 1.52 10.13 59.84 0.61 2.13 16 12 C 0.26 6.36 4.38 -5.19 -0.02 6.34 16 13 C -0.53 -14.72 9.38 -34.44 -0.32 -15.05 16 14 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 17 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 C -0.12 -1.28 3.31 -89.72 -0.30 -1.57 16 22 C -0.14 -1.68 7.37 -25.92 -0.19 -1.87 16 23 C -0.14 -1.39 8.08 -25.92 -0.21 -1.59 16 24 C -0.13 -1.20 7.41 -25.83 -0.19 -1.39 16 25 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 1.15 6.99 -51.93 -0.36 0.79 16 29 H 0.06 0.83 6.78 -51.93 -0.35 0.48 16 30 H 0.07 0.64 7.94 -51.93 -0.41 0.22 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.41 5.27 8.96 -34.47 -0.31 4.96 16 33 H 0.04 0.54 6.62 -51.93 -0.34 0.19 16 34 H 0.08 1.30 8.11 -51.93 -0.42 0.87 16 35 H 0.07 1.05 6.91 -51.93 -0.36 0.69 16 36 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 37 H 0.04 0.93 7.64 -51.93 -0.40 0.53 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 1.44 6.53 -51.93 -0.34 1.10 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.73 8.05 -51.93 -0.42 0.32 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -32.40 367.09 -10.26 -42.66 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -7.85 Total: 2.38 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -0.78 Total: -14.15 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.32 Total: -61.62 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -1.82 Total: -44.68 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 53.64 SS G_CDS: -0.64 Total: 53.00 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.40 -10.26 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416558813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.579 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds