Wall clock time and date at job start Tue Mar 31 2020 08:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47520 * 2 1 4 4 C 1.53001 * 109.47346 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47080 * 304.00942 * 4 3 2 6 6 N 1.46494 * 109.46968 * 64.00765 * 4 3 2 7 7 S 1.65603 * 120.00173 * 233.73499 * 6 4 3 8 8 O 1.42091 * 106.40514 * 176.34916 * 7 6 4 9 9 O 1.42101 * 106.40125 * 309.27148 * 7 6 4 10 10 N 1.65606 * 107.21677 * 62.80719 * 7 6 4 11 11 C 1.46494 * 120.00027 * 268.76217 * 10 7 6 12 12 C 1.46496 * 119.99819 * 88.76086 * 10 7 6 13 13 C 1.50702 * 109.47275 * 94.99911 * 12 10 7 14 14 H 1.07998 * 119.99717 * 0.02562 * 13 12 10 15 15 C 1.37873 * 119.99820 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00556 * 359.97438 * 15 13 12 17 17 Si 1.86810 * 119.99706 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47063 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47064 * 119.99695 * 17 15 13 20 20 H 1.48495 * 109.47129 * 240.00041 * 17 15 13 21 21 C 1.53002 * 109.47369 * 184.01350 * 4 3 2 22 22 C 1.53775 * 113.61480 * 174.33043 * 21 4 3 23 23 C 1.53782 * 87.08143 * 220.01342 * 22 21 4 24 24 C 1.53784 * 87.16970 * 25.39254 * 23 22 21 25 25 H 1.09010 * 109.47050 * 59.99080 * 1 2 3 26 26 H 1.08996 * 109.47555 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46663 * 299.99758 * 1 2 3 28 28 H 1.09000 * 109.46663 * 240.00242 * 2 1 3 29 29 H 1.09001 * 109.46790 * 120.01020 * 2 1 3 30 30 H 1.09005 * 109.46879 * 60.05493 * 3 2 1 31 31 H 1.08997 * 109.47694 * 300.05635 * 3 2 1 32 32 H 0.96999 * 120.00230 * 53.73955 * 6 4 3 33 33 H 1.09001 * 109.47601 * 94.77759 * 11 10 7 34 34 H 1.09005 * 109.46964 * 214.77701 * 11 10 7 35 35 H 1.09004 * 109.47504 * 334.77346 * 11 10 7 36 36 H 1.09000 * 109.47458 * 215.00062 * 12 10 7 37 37 H 1.09004 * 109.47384 * 335.00039 * 12 10 7 38 38 H 0.96998 * 120.00391 * 179.97438 * 16 15 13 39 39 H 1.09000 * 112.84601 * 305.52093 * 21 4 3 40 40 H 1.09003 * 113.61907 * 105.46402 * 22 21 4 41 41 H 1.09000 * 113.61509 * 334.56150 * 22 21 4 42 42 H 1.08998 * 113.61201 * 139.97757 * 23 22 21 43 43 H 1.08995 * 113.61081 * 270.80135 * 23 22 21 44 44 H 1.08997 * 113.61656 * 89.15586 * 24 23 22 45 45 H 1.09003 * 113.60864 * 220.06024 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9338 0.8674 0.8510 6 7 4.0578 0.8372 -1.2424 7 16 5.1336 -0.4204 -1.1839 8 8 5.3411 -0.8339 -2.5274 9 8 6.1884 -0.0066 -0.3264 10 7 4.3757 -1.6786 -0.4190 11 6 4.4930 -1.8306 1.0332 12 6 3.5878 -2.6397 -1.1948 13 6 4.4433 -3.8330 -1.5341 14 1 5.4710 -3.8718 -1.2044 15 6 3.9140 -4.8751 -2.2654 16 7 2.6624 -4.8281 -2.6664 17 14 4.9744 -6.3547 -2.6853 18 1 6.3349 -6.1647 -2.1213 19 1 4.3654 -7.5798 -2.1081 20 1 5.0659 -6.4953 -4.1607 21 6 4.0802 2.8813 0.1003 22 6 5.6075 2.9845 0.2465 23 6 5.3555 4.1156 1.2574 24 6 3.9826 3.4736 1.5180 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 1.6775 1.9559 0.8905 31 1 1.6760 1.9566 -0.8894 32 1 3.7507 1.1732 -2.0990 33 1 3.6389 -1.3580 1.5183 34 1 4.5144 -2.8905 1.2871 35 1 5.4131 -1.3566 1.3751 36 1 2.7288 -2.9637 -0.6073 37 1 3.2417 -2.1676 -2.1144 38 1 2.2902 -5.5611 -3.1812 39 1 3.6708 3.5307 -0.6734 40 1 6.1118 3.3149 -0.6617 41 1 6.0648 2.0988 0.6874 42 1 6.0216 4.0869 2.1197 43 1 5.2959 5.1037 0.8012 44 1 3.9948 2.7217 2.3071 45 1 3.1768 4.1983 1.6348 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416558813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:19 Heat of formation + Delta-G solvation = -99.995333 kcal Electronic energy + Delta-G solvation = -25171.307369 eV Core-core repulsion = 21735.607185 eV Total energy + Delta-G solvation = -3435.700184 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.24075 -38.17621 -37.34779 -36.84461 -36.69405 -34.48968 -34.02302 -29.86145 -29.62849 -26.78572 -26.50915 -26.15293 -24.19891 -22.92477 -21.88128 -20.61307 -20.03377 -18.89926 -18.36788 -18.07503 -17.42548 -16.79223 -16.26025 -16.02391 -15.89416 -15.62080 -14.98820 -14.94143 -14.49347 -14.06267 -13.90850 -13.82459 -13.48189 -13.34249 -13.31992 -13.04975 -12.96742 -12.90405 -12.87086 -12.63601 -12.47427 -12.42304 -12.37401 -12.07734 -11.97993 -11.76169 -11.74114 -11.54613 -11.32830 -11.19377 -11.01412 -10.59292 -10.12765 -9.73061 -8.19840 -6.31173 -0.24196 1.37138 1.39903 1.51218 2.10097 2.40442 2.70751 3.11029 3.53333 3.62094 3.83552 3.85850 4.08302 4.11479 4.16013 4.26088 4.32219 4.33995 4.60633 4.65834 4.76856 4.82107 4.83721 4.93527 4.95665 5.02967 5.07113 5.10332 5.12994 5.15545 5.19229 5.23029 5.25598 5.39157 5.44543 5.50009 5.58389 5.60867 5.71501 5.75638 5.90959 6.12463 6.24848 6.77682 7.37630 8.87474 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.005047 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.974022 B = 5546.336639 C = 6396.920792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C -0.115 4.115 4 C 0.161 3.839 5 H 0.081 0.919 6 N -1.111 6.111 7 S 2.794 3.206 8 O -1.020 7.020 9 O -1.002 7.002 10 N -0.998 5.998 11 C 0.087 3.913 12 C 0.282 3.718 13 C -0.549 4.549 14 H 0.049 0.951 15 C 0.014 3.986 16 N -0.923 5.923 17 Si 0.953 3.047 18 H -0.271 1.271 19 H -0.269 1.269 20 H -0.280 1.280 21 C -0.116 4.116 22 C -0.156 4.156 23 C -0.138 4.138 24 C -0.123 4.123 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.419 0.581 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.028 0.972 37 H 0.012 0.988 38 H 0.267 0.733 39 H 0.104 0.896 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.020 17.414 9.946 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C -0.154 4.154 4 C 0.055 3.945 5 H 0.099 0.901 6 N -0.872 5.872 7 S 2.802 3.198 8 O -1.004 7.004 9 O -0.986 6.986 10 N -0.840 5.840 11 C -0.058 4.058 12 C 0.158 3.842 13 C -0.589 4.589 14 H 0.067 0.933 15 C -0.186 4.186 16 N -0.563 5.563 17 Si 0.778 3.222 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.206 1.206 21 C -0.136 4.136 22 C -0.194 4.194 23 C -0.175 4.175 24 C -0.161 4.161 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.254 0.746 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.030 0.970 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.191 17.223 9.708 19.892 hybrid contribution 0.097 -1.168 -0.992 1.536 sum -2.093 16.055 8.715 18.388 Atomic orbital electron populations 1.21700 0.95202 1.01152 1.02204 1.21627 0.96527 0.97336 1.01693 1.21902 0.92944 0.96510 1.03994 1.21033 0.95134 0.93920 0.84459 0.90136 1.55830 1.65611 1.50837 1.14967 1.01297 0.73856 0.72720 0.71942 1.93560 1.85702 1.82321 1.38853 1.93500 1.53780 1.82545 1.68730 1.57406 1.68425 1.41694 1.16478 1.21611 1.02027 1.03572 0.78635 1.18475 0.90195 0.86100 0.89381 1.21905 0.98317 1.04280 1.34359 0.93253 1.25697 0.96293 1.01214 0.95389 1.70007 1.14400 1.33653 1.38190 0.85586 0.79108 0.79438 0.78052 1.19586 1.19416 1.20584 1.22993 0.95874 0.95260 0.99514 1.23080 0.96605 0.99873 0.99818 1.22813 0.97784 0.97913 0.99015 1.22904 0.97734 1.00136 0.95297 0.92717 0.94174 0.91173 0.94005 0.92135 0.88544 0.90709 0.74630 0.91012 0.91508 0.90447 0.95352 0.97005 0.92444 0.87798 0.92922 0.90612 0.91415 0.89323 0.89749 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.91 71.98 0.71 -2.46 16 2 C -0.13 -3.29 5.81 30.59 0.18 -3.11 16 3 C -0.11 -2.14 4.87 30.59 0.15 -1.99 16 4 C 0.16 3.56 2.02 44.99 0.09 3.65 16 5 H 0.08 1.85 7.00 -2.38 -0.02 1.84 16 6 N -1.11 -31.48 4.73 -169.39 -0.80 -32.28 16 7 S 2.79 109.82 5.91 -56.49 -0.33 109.48 16 8 O -1.02 -50.65 17.15 -128.00 -2.20 -52.84 16 9 O -1.00 -39.87 14.76 -128.00 -1.89 -41.76 16 10 N -1.00 -40.48 3.23 -543.23 -1.75 -42.23 16 11 C 0.09 2.84 10.13 127.77 1.29 4.13 16 12 C 0.28 14.19 4.38 85.63 0.38 14.57 16 13 C -0.55 -31.39 9.38 25.60 0.24 -31.15 16 14 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 15 C 0.01 0.77 5.46 84.65 0.46 1.24 16 16 N -0.92 -54.29 13.29 21.45 0.28 -54.00 16 17 Si 0.95 45.17 29.54 68.60 2.03 47.19 16 18 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 21 C -0.12 -2.16 3.31 -10.21 -0.03 -2.20 16 22 C -0.16 -3.56 7.37 31.12 0.23 -3.33 16 23 C -0.14 -2.28 8.08 31.12 0.25 -2.03 16 24 C -0.12 -1.79 7.41 31.18 0.23 -1.56 16 25 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 1.30 6.99 -2.39 -0.02 1.28 16 29 H 0.06 1.49 6.78 -2.39 -0.02 1.47 16 30 H 0.10 1.35 7.94 -2.38 -0.02 1.33 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.42 10.65 8.96 -96.75 -0.87 9.78 16 33 H 0.07 1.86 6.62 -2.39 -0.02 1.84 16 34 H 0.07 2.29 8.11 -2.38 -0.02 2.27 16 35 H 0.08 2.36 6.91 -2.39 -0.02 2.34 16 36 H 0.03 1.45 8.11 -2.39 -0.02 1.43 16 37 H 0.01 0.65 7.64 -2.38 -0.02 0.64 16 38 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 2.13 6.53 -2.39 -0.02 2.11 16 42 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.22 8.05 -2.39 -0.02 1.20 16 45 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -71.04 367.09 -0.39 -71.42 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.09 Total: 19.26 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 4.18 Total: -24.24 kcal Atomic # 7 Polarization: -126.25 SS G_CDS: -2.27 Total: -128.51 kcal Atomic # 8 Polarization: -90.52 SS G_CDS: -4.08 Total: -94.60 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 109.82 SS G_CDS: -0.33 Total: 109.48 kcal Total: -71.04 -0.39 -71.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416558813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.571 kcal (2) G-P(sol) polarization free energy of solvation -71.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds