Wall clock time and date at job start Tue Mar 31 2020 08:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47265 * 2 1 4 4 C 1.52993 * 109.47364 * 120.00772 * 2 1 3 5 5 H 1.09000 * 112.78112 * 305.15637 * 4 2 1 6 6 N 1.47067 * 113.47118 * 75.94160 * 4 2 1 7 7 S 1.65599 * 136.05686 * 321.86933 * 6 4 2 8 8 O 1.42098 * 106.39849 * 333.11948 * 7 6 4 9 9 O 1.42101 * 106.40208 * 200.20362 * 7 6 4 10 10 N 1.65598 * 107.21998 * 86.66060 * 7 6 4 11 11 C 1.46500 * 120.00050 * 263.19023 * 10 7 6 12 12 C 1.46503 * 120.00082 * 83.18872 * 10 7 6 13 13 C 1.50700 * 109.47042 * 94.99914 * 12 10 7 14 14 H 1.08002 * 119.99541 * 0.02562 * 13 12 10 15 15 C 1.37873 * 120.00203 * 180.02562 * 13 12 10 16 16 N 1.31516 * 119.99942 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00395 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47565 * 180.02562 * 17 15 13 19 19 H 1.48500 * 109.47069 * 59.99458 * 17 15 13 20 20 H 1.48500 * 109.46801 * 300.00437 * 17 15 13 21 21 C 1.47066 * 87.88689 * 142.12133 * 6 4 2 22 22 C 1.53508 * 113.46826 * 174.37839 * 4 2 1 23 23 C 1.53000 * 114.20236 * 332.73785 * 22 4 2 24 24 C 1.52997 * 114.20528 * 105.36256 * 22 4 2 25 25 H 1.09007 * 109.46557 * 290.83881 * 1 2 3 26 26 H 1.08994 * 109.47580 * 50.83248 * 1 2 3 27 27 H 1.08993 * 109.47441 * 170.83847 * 1 2 3 28 28 H 1.09009 * 109.46819 * 240.00408 * 2 1 3 29 29 H 1.09008 * 109.46811 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47400 * 300.00645 * 3 2 1 31 31 H 1.09001 * 109.46646 * 60.00668 * 3 2 1 32 32 H 1.08997 * 109.47152 * 275.83515 * 11 10 7 33 33 H 1.08997 * 109.47189 * 35.83449 * 11 10 7 34 34 H 1.09007 * 109.47185 * 155.83490 * 11 10 7 35 35 H 1.08996 * 109.47149 * 335.00181 * 12 10 7 36 36 H 1.08994 * 109.47195 * 215.00167 * 12 10 7 37 37 H 0.97006 * 119.99747 * 0.02562 * 16 15 13 38 38 H 1.08999 * 113.47056 * 87.43666 * 21 6 4 39 39 H 1.08998 * 113.47040 * 217.88246 * 21 6 4 40 40 H 1.08995 * 109.47170 * 60.00170 * 23 22 4 41 41 H 1.09002 * 109.46712 * 180.02562 * 23 22 4 42 42 H 1.08992 * 109.47100 * 299.99671 * 23 22 4 43 43 H 1.09006 * 109.47215 * 60.00555 * 24 22 4 44 44 H 1.09000 * 109.47072 * 179.97438 * 24 22 4 45 45 H 1.08996 * 109.47416 * 300.00139 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6351 -0.3053 2.1716 6 7 1.9263 -2.1854 1.1674 7 16 0.8264 -3.2639 0.5598 8 8 -0.4350 -2.6102 0.5895 9 8 1.0758 -4.5016 1.2117 10 7 1.1964 -3.4939 -1.0378 11 6 0.4836 -2.7384 -2.0709 12 6 2.2366 -4.4529 -1.4181 13 6 1.6013 -5.7795 -1.7457 14 1 0.5298 -5.8965 -1.6779 15 6 2.3879 -6.8439 -2.1321 16 7 3.6926 -6.7013 -2.2152 17 14 1.6003 -8.4882 -2.5389 18 1 2.6548 -9.4607 -2.9231 19 1 0.6500 -8.3163 -3.6669 20 1 0.8699 -8.9949 -1.3494 21 6 3.2163 -2.2701 1.8686 22 6 3.5650 -0.8954 1.2746 23 6 4.2132 -0.9513 -0.1101 24 6 4.2873 0.0432 2.2431 25 1 -0.3633 0.3656 0.9605 26 1 -0.3634 0.6490 -0.7967 27 1 -0.3634 -1.0145 -0.1636 28 1 1.8933 -0.5138 -0.8901 29 1 3.1301 1.4424 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 -0.4525 -3.2434 -2.3096 33 1 0.2714 -1.7338 -1.7052 34 1 1.1014 -2.6760 -2.9669 35 1 2.9347 -4.5789 -0.5906 36 1 2.7720 -4.0808 -2.2916 37 1 4.1016 -5.8473 -2.0043 38 1 3.1216 -2.2624 2.9544 39 1 3.8551 -3.0756 1.5064 40 1 4.0061 -0.0250 -0.6459 41 1 5.2907 -1.0759 -0.0021 42 1 3.8047 -1.7933 -0.6688 43 1 3.9283 -0.1343 3.2570 44 1 5.3600 -0.1454 2.1998 45 1 4.0883 1.0776 1.9631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431590285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:13 Heat of formation + Delta-G solvation = -46.361766 kcal Electronic energy + Delta-G solvation = -25846.169572 eV Core-core repulsion = 22412.795114 eV Total energy + Delta-G solvation = -3433.374458 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.54078 -36.81948 -35.71429 -35.22536 -34.43411 -32.61375 -32.16828 -27.68099 -27.48885 -26.83353 -25.70093 -25.47022 -24.73757 -22.45398 -20.54129 -18.84591 -18.20372 -17.58816 -16.85630 -16.64964 -15.89360 -15.23089 -14.95954 -14.58382 -14.23193 -13.81465 -13.67234 -13.31385 -13.08103 -13.02180 -12.73170 -12.58865 -12.34474 -12.27850 -12.11837 -12.01545 -11.91514 -11.70916 -11.58925 -11.49342 -11.29673 -11.24766 -11.14707 -10.79098 -10.61768 -10.56069 -10.39563 -10.17322 -10.06712 -9.77576 -9.33051 -8.89557 -8.39257 -7.94753 -6.40272 -4.11554 1.06849 3.40546 3.45039 3.49573 3.66511 3.99293 4.18031 4.54076 4.62294 4.66191 4.74045 4.94570 5.04722 5.09611 5.30862 5.31859 5.45278 5.48010 5.53777 5.60573 5.63142 5.70761 5.75824 5.83808 5.87240 5.88414 5.92870 5.94280 5.98917 6.05382 6.12962 6.16028 6.23733 6.30469 6.42780 6.46268 6.73897 6.79940 6.88702 7.16178 7.44233 7.99998 8.44065 8.78912 9.56867 10.97605 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.005430 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.009372 B = 5154.935904 C = 5536.785518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 C -0.141 4.141 4 C 0.171 3.829 5 H 0.088 0.912 6 N -1.047 6.047 7 S 2.799 3.201 8 O -0.983 6.983 9 O -0.961 6.961 10 N -0.989 5.989 11 C 0.102 3.898 12 C 0.252 3.748 13 C -0.606 4.606 14 H 0.054 0.946 15 C 0.021 3.979 16 N -0.910 5.910 17 Si 1.069 2.931 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.286 1.286 21 C 0.134 3.866 22 C -0.097 4.097 23 C -0.130 4.130 24 C -0.135 4.135 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.021 0.979 36 H 0.024 0.976 37 H 0.266 0.734 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 17.380 5.563 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.134 4.134 3 C -0.199 4.199 4 C 0.065 3.935 5 H 0.105 0.895 6 N -0.885 5.885 7 S 2.810 3.190 8 O -0.967 6.967 9 O -0.944 6.944 10 N -0.831 5.831 11 C -0.045 4.045 12 C 0.130 3.870 13 C -0.645 4.645 14 H 0.072 0.928 15 C -0.183 4.183 16 N -0.546 5.546 17 Si 0.897 3.103 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.212 1.212 21 C 0.008 3.992 22 C -0.100 4.100 23 C -0.187 4.187 24 C -0.193 4.193 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.125 0.875 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.128 15.203 5.457 16.154 hybrid contribution -0.184 1.662 0.302 1.699 sum -0.056 16.865 5.760 17.822 Atomic orbital electron populations 1.22618 0.94181 1.06400 1.01511 1.21528 0.96959 0.96774 0.98140 1.21815 1.01171 0.95116 1.01777 1.22231 0.93841 0.79544 0.97890 0.89461 1.60803 1.37437 1.18265 1.71958 1.01363 0.72480 0.72097 0.73051 1.93396 1.40236 1.75862 1.87246 1.93620 1.85272 1.41240 1.74318 1.57531 1.51356 1.51881 1.22335 1.21393 0.96789 0.94180 0.92123 1.19070 0.85261 0.87237 0.95474 1.22301 0.95693 0.96462 1.50044 0.92790 1.25806 0.95223 1.03230 0.94056 1.70837 1.10140 1.27735 1.45900 0.83548 0.75146 0.75093 0.76562 1.20643 1.21371 1.21221 1.22582 0.82783 0.97348 0.96509 1.22446 0.94627 0.95856 0.97043 1.21628 1.00028 1.02747 0.94271 1.21714 1.00334 0.98954 0.98280 0.92920 0.93104 0.87521 0.90142 0.92063 0.92555 0.92685 0.93236 0.92288 0.91359 0.96092 0.95837 0.92424 0.90228 0.90349 0.91652 0.92203 0.91641 0.92350 0.92103 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.53 7.92 37.16 0.29 -2.23 16 2 C -0.11 -1.36 2.00 -90.62 -0.18 -1.54 16 3 C -0.14 -1.27 8.69 37.16 0.32 -0.95 16 4 C 0.17 2.14 2.94 -72.39 -0.21 1.92 16 5 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 6 N -1.05 -16.80 3.92 -117.63 -0.46 -17.26 16 7 S 2.80 58.05 6.27 -107.50 -0.67 57.37 16 8 O -0.98 -20.36 13.51 -57.17 -0.77 -21.13 16 9 O -0.96 -24.34 17.36 -57.17 -0.99 -25.33 16 10 N -0.99 -20.92 3.23 -123.05 -0.40 -21.32 16 11 C 0.10 1.80 10.26 59.85 0.61 2.41 16 12 C 0.25 6.30 4.42 -5.19 -0.02 6.27 16 13 C -0.61 -17.40 9.38 -34.44 -0.32 -17.72 16 14 H 0.05 1.58 7.81 -52.49 -0.41 1.17 16 15 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 16 N -0.91 -27.30 13.65 55.43 0.76 -26.55 16 17 Si 1.07 25.87 29.90 -169.99 -5.08 20.79 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.13 1.82 7.85 -8.36 -0.07 1.75 16 22 C -0.10 -1.07 0.91 -153.85 -0.14 -1.21 16 23 C -0.13 -1.46 7.91 37.16 0.29 -1.17 16 24 C -0.13 -1.10 9.29 37.16 0.35 -0.75 16 25 H 0.05 0.68 8.12 -51.93 -0.42 0.25 16 26 H 0.05 0.59 8.12 -51.93 -0.42 0.17 16 27 H 0.11 1.73 2.56 -52.37 -0.13 1.60 16 28 H 0.08 1.03 6.35 -51.92 -0.33 0.70 16 29 H 0.06 0.50 5.28 -51.92 -0.27 0.23 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.90 4.42 -51.93 -0.23 0.67 16 34 H 0.07 1.13 7.88 -51.93 -0.41 0.72 16 35 H 0.02 0.55 7.66 -51.93 -0.40 0.16 16 36 H 0.02 0.59 7.80 -51.93 -0.41 0.18 16 37 H 0.27 7.79 7.22 -40.82 -0.29 7.50 16 38 H 0.08 0.93 7.94 -51.93 -0.41 0.52 16 39 H 0.08 1.15 8.12 -51.93 -0.42 0.72 16 40 H 0.06 0.65 5.49 -51.93 -0.29 0.36 16 41 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 42 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 43 H 0.06 0.44 7.90 -51.93 -0.41 0.03 16 44 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 45 H 0.06 0.44 7.38 -51.93 -0.38 0.06 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -33.92 352.92 -8.86 -42.77 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.38 Total: -1.97 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 0.83 Total: -12.70 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: -0.10 Total: -65.13 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -1.76 Total: -46.46 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.08 Total: 20.79 kcal Atomic # 16 Polarization: 58.05 SS G_CDS: -0.67 Total: 57.37 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.92 -8.86 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431590285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.589 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds