Wall clock time and date at job start Tue Mar 31 2020 08:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47265 * 2 1 4 4 C 1.52993 * 109.47364 * 120.00772 * 2 1 3 5 5 H 1.09000 * 112.78112 * 305.15637 * 4 2 1 6 6 N 1.47067 * 113.47118 * 75.94160 * 4 2 1 7 7 S 1.65599 * 136.05686 * 321.86933 * 6 4 2 8 8 O 1.42098 * 106.39849 * 333.11948 * 7 6 4 9 9 O 1.42101 * 106.40208 * 200.20362 * 7 6 4 10 10 N 1.65598 * 107.21998 * 86.66060 * 7 6 4 11 11 C 1.46500 * 120.00050 * 263.19023 * 10 7 6 12 12 C 1.46503 * 120.00082 * 83.18872 * 10 7 6 13 13 C 1.50700 * 109.47042 * 94.99914 * 12 10 7 14 14 H 1.08002 * 119.99541 * 0.02562 * 13 12 10 15 15 C 1.37873 * 120.00203 * 180.02562 * 13 12 10 16 16 N 1.31516 * 119.99942 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00395 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47565 * 180.02562 * 17 15 13 19 19 H 1.48500 * 109.47069 * 59.99458 * 17 15 13 20 20 H 1.48500 * 109.46801 * 300.00437 * 17 15 13 21 21 C 1.47066 * 87.88689 * 142.12133 * 6 4 2 22 22 C 1.53508 * 113.46826 * 174.37839 * 4 2 1 23 23 C 1.53000 * 114.20236 * 332.73785 * 22 4 2 24 24 C 1.52997 * 114.20528 * 105.36256 * 22 4 2 25 25 H 1.09007 * 109.46557 * 290.83881 * 1 2 3 26 26 H 1.08994 * 109.47580 * 50.83248 * 1 2 3 27 27 H 1.08993 * 109.47441 * 170.83847 * 1 2 3 28 28 H 1.09009 * 109.46819 * 240.00408 * 2 1 3 29 29 H 1.09008 * 109.46811 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47400 * 300.00645 * 3 2 1 31 31 H 1.09001 * 109.46646 * 60.00668 * 3 2 1 32 32 H 1.08997 * 109.47152 * 275.83515 * 11 10 7 33 33 H 1.08997 * 109.47189 * 35.83449 * 11 10 7 34 34 H 1.09007 * 109.47185 * 155.83490 * 11 10 7 35 35 H 1.08996 * 109.47149 * 335.00181 * 12 10 7 36 36 H 1.08994 * 109.47195 * 215.00167 * 12 10 7 37 37 H 0.97006 * 119.99747 * 0.02562 * 16 15 13 38 38 H 1.08999 * 113.47056 * 87.43666 * 21 6 4 39 39 H 1.08998 * 113.47040 * 217.88246 * 21 6 4 40 40 H 1.08995 * 109.47170 * 60.00170 * 23 22 4 41 41 H 1.09002 * 109.46712 * 180.02562 * 23 22 4 42 42 H 1.08992 * 109.47100 * 299.99671 * 23 22 4 43 43 H 1.09006 * 109.47215 * 60.00555 * 24 22 4 44 44 H 1.09000 * 109.47072 * 179.97438 * 24 22 4 45 45 H 1.08996 * 109.47416 * 300.00139 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6351 -0.3053 2.1716 6 7 1.9263 -2.1854 1.1674 7 16 0.8264 -3.2639 0.5598 8 8 -0.4350 -2.6102 0.5895 9 8 1.0758 -4.5016 1.2117 10 7 1.1964 -3.4939 -1.0378 11 6 0.4836 -2.7384 -2.0709 12 6 2.2366 -4.4529 -1.4181 13 6 1.6013 -5.7795 -1.7457 14 1 0.5298 -5.8965 -1.6779 15 6 2.3879 -6.8439 -2.1321 16 7 3.6926 -6.7013 -2.2152 17 14 1.6003 -8.4882 -2.5389 18 1 2.6548 -9.4607 -2.9231 19 1 0.6500 -8.3163 -3.6669 20 1 0.8699 -8.9949 -1.3494 21 6 3.2163 -2.2701 1.8686 22 6 3.5650 -0.8954 1.2746 23 6 4.2132 -0.9513 -0.1101 24 6 4.2873 0.0432 2.2431 25 1 -0.3633 0.3656 0.9605 26 1 -0.3634 0.6490 -0.7967 27 1 -0.3634 -1.0145 -0.1636 28 1 1.8933 -0.5138 -0.8901 29 1 3.1301 1.4424 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 -0.4525 -3.2434 -2.3096 33 1 0.2714 -1.7338 -1.7052 34 1 1.1014 -2.6760 -2.9669 35 1 2.9347 -4.5789 -0.5906 36 1 2.7720 -4.0808 -2.2916 37 1 4.1016 -5.8473 -2.0043 38 1 3.1216 -2.2624 2.9544 39 1 3.8551 -3.0756 1.5064 40 1 4.0061 -0.0250 -0.6459 41 1 5.2907 -1.0759 -0.0021 42 1 3.8047 -1.7933 -0.6688 43 1 3.9283 -0.1343 3.2570 44 1 5.3600 -0.1454 2.1998 45 1 4.0883 1.0776 1.9631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431590285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:12 Heat of formation + Delta-G solvation = -70.084844 kcal Electronic energy + Delta-G solvation = -25847.198281 eV Core-core repulsion = 22412.795114 eV Total energy + Delta-G solvation = -3434.403168 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.57031 -38.50267 -37.51789 -36.98651 -35.43426 -34.70853 -33.15913 -29.43042 -28.39582 -27.78064 -26.79522 -26.69584 -26.36347 -24.47601 -21.50723 -20.19267 -19.45374 -19.29841 -18.51340 -18.34841 -17.43884 -16.26066 -16.15034 -15.87779 -15.69596 -15.61591 -15.10030 -14.88173 -14.38680 -14.32239 -14.03264 -13.85558 -13.61967 -13.47567 -13.40115 -13.26006 -13.12530 -13.03946 -12.98186 -12.85582 -12.73009 -12.47600 -12.46373 -12.37890 -12.06754 -11.95225 -11.72682 -11.43513 -11.38407 -11.28909 -10.71530 -10.60664 -10.08855 -9.81632 -8.70004 -6.43487 -0.51980 1.48845 1.57185 1.76876 1.91619 2.42288 2.53156 3.06289 3.10434 3.32309 3.59867 3.77572 3.91238 4.03675 4.15714 4.25030 4.39613 4.47549 4.51492 4.56200 4.59954 4.70739 4.75594 4.79973 4.84417 4.88280 4.90742 4.92534 4.97109 5.05662 5.08848 5.13850 5.21144 5.24239 5.27661 5.30490 5.50125 5.58091 5.61892 5.72568 5.76499 5.82617 6.16175 6.49596 7.32066 8.67517 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.005430 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.009372 B = 5154.935904 C = 5536.785518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 C -0.135 4.135 4 C 0.166 3.834 5 H 0.105 0.895 6 N -1.051 6.051 7 S 2.808 3.192 8 O -0.988 6.988 9 O -1.017 7.017 10 N -0.995 5.995 11 C 0.097 3.903 12 C 0.268 3.732 13 C -0.625 4.625 14 H 0.040 0.960 15 C -0.026 4.026 16 N -0.928 5.928 17 Si 1.109 2.891 18 H -0.274 1.274 19 H -0.265 1.265 20 H -0.282 1.282 21 C 0.119 3.881 22 C -0.077 4.077 23 C -0.131 4.131 24 C -0.129 4.129 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.003 0.997 36 H 0.024 0.976 37 H 0.258 0.742 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.031 0.969 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.043 19.778 5.852 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.135 4.135 3 C -0.193 4.193 4 C 0.062 3.938 5 H 0.123 0.877 6 N -0.893 5.893 7 S 2.821 3.179 8 O -0.972 6.972 9 O -1.001 7.001 10 N -0.836 5.836 11 C -0.049 4.049 12 C 0.144 3.856 13 C -0.664 4.664 14 H 0.059 0.941 15 C -0.225 4.225 16 N -0.565 5.565 17 Si 0.930 3.070 18 H -0.199 1.199 19 H -0.190 1.190 20 H -0.208 1.208 21 C -0.006 4.006 22 C -0.079 4.079 23 C -0.188 4.188 24 C -0.187 4.187 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.021 0.979 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.050 0.950 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.460 17.630 5.734 18.545 hybrid contribution -0.294 1.032 0.267 1.106 sum 0.166 18.662 6.001 19.604 Atomic orbital electron populations 1.22572 0.95275 1.04676 1.02350 1.21556 0.96012 0.98711 0.97227 1.21780 1.01900 0.92728 1.02846 1.22635 0.95071 0.77034 0.99090 0.87707 1.60462 1.37431 1.19745 1.71694 1.00699 0.72842 0.71622 0.72726 1.93415 1.41040 1.75531 1.87205 1.93539 1.86257 1.44906 1.75418 1.57430 1.50814 1.51907 1.23402 1.21588 0.96288 0.94998 0.92001 1.18646 0.85611 0.86864 0.94501 1.22655 0.95233 0.98455 1.50060 0.94146 1.27180 0.95199 1.06615 0.93526 1.70935 1.10802 1.27511 1.47220 0.83052 0.75069 0.71596 0.77278 1.19889 1.18952 1.20783 1.22965 0.81317 0.98655 0.97652 1.22360 0.93867 0.94369 0.97327 1.21655 1.00557 1.02244 0.94318 1.21710 1.00419 0.98892 0.97706 0.92536 0.91547 0.90576 0.91355 0.90827 0.91826 0.91381 0.93868 0.89643 0.90322 0.97946 0.95840 0.93220 0.88124 0.92412 0.89793 0.91110 0.95019 0.91399 0.91184 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.73 7.92 71.98 0.57 -4.16 16 2 C -0.12 -2.48 2.00 -10.80 -0.02 -2.50 16 3 C -0.13 -1.91 8.69 71.98 0.63 -1.29 16 4 C 0.17 3.81 2.94 41.80 0.12 3.93 16 5 H 0.11 2.07 8.10 -2.39 -0.02 2.05 16 6 N -1.05 -33.70 3.92 -526.07 -2.06 -35.76 16 7 S 2.81 119.91 6.27 -56.49 -0.35 119.55 16 8 O -0.99 -41.48 13.51 -128.00 -1.73 -43.21 16 9 O -1.02 -53.96 17.36 -128.00 -2.22 -56.18 16 10 N -0.99 -43.36 3.23 -543.23 -1.75 -45.12 16 11 C 0.10 3.46 10.26 127.77 1.31 4.77 16 12 C 0.27 13.91 4.42 85.63 0.38 14.29 16 13 C -0.62 -36.95 9.38 25.60 0.24 -36.71 16 14 H 0.04 2.44 7.81 -2.91 -0.02 2.42 16 15 C -0.03 -1.54 5.46 84.65 0.46 -1.08 16 16 N -0.93 -56.72 13.65 21.45 0.29 -56.43 16 17 Si 1.11 52.27 29.90 68.60 2.05 54.32 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 C 0.12 3.19 7.85 83.27 0.65 3.84 16 22 C -0.08 -1.51 0.91 -51.76 -0.05 -1.55 16 23 C -0.13 -2.74 7.91 71.98 0.57 -2.17 16 24 C -0.13 -1.59 9.29 71.98 0.67 -0.92 16 25 H 0.06 1.33 8.12 -2.38 -0.02 1.31 16 26 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 27 H 0.08 2.41 2.56 -9.25 -0.02 2.38 16 28 H 0.07 1.65 6.35 -2.38 -0.02 1.63 16 29 H 0.07 0.87 5.28 -2.38 -0.01 0.86 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 2.58 4.42 -2.39 -0.01 2.57 16 34 H 0.08 2.61 7.88 -2.38 -0.02 2.59 16 35 H 0.00 0.15 7.66 -2.39 -0.02 0.13 16 36 H 0.02 1.21 7.80 -2.39 -0.02 1.19 16 37 H 0.26 15.65 7.22 -92.70 -0.67 14.98 16 38 H 0.10 2.23 7.94 -2.39 -0.02 2.21 16 39 H 0.06 1.76 8.12 -2.39 -0.02 1.74 16 40 H 0.08 1.43 5.49 -2.39 -0.01 1.42 16 41 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 42 H 0.03 0.88 7.88 -2.39 -0.02 0.86 16 43 H 0.07 0.75 7.90 -2.38 -0.02 0.73 16 44 H 0.07 0.79 8.13 -2.39 -0.02 0.77 16 45 H 0.08 0.74 7.38 -2.39 -0.02 0.72 16 Total: -1.00 -75.62 352.92 0.81 -74.82 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.05 Total: 11.57 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 5.53 Total: -23.55 kcal Atomic # 7 Polarization: -133.79 SS G_CDS: -3.52 Total: -137.31 kcal Atomic # 8 Polarization: -95.45 SS G_CDS: -3.95 Total: -99.40 kcal Atomic # 14 Polarization: 52.27 SS G_CDS: 2.05 Total: 54.32 kcal Atomic # 16 Polarization: 119.91 SS G_CDS: -0.35 Total: 119.55 kcal Total: -75.62 0.81 -74.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431590285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.732 kcal (2) G-P(sol) polarization free energy of solvation -75.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds