Wall clock time and date at job start Tue Mar 31 2020 08:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46755 * 2 1 4 4 C 1.52998 * 109.47473 * 120.00398 * 2 1 3 5 5 H 1.08992 * 109.49810 * 299.93592 * 4 2 1 6 6 C 1.53044 * 109.52358 * 179.85371 * 4 2 1 7 7 C 1.53039 * 109.53727 * 178.66753 * 6 4 2 8 8 C 1.52756 * 109.38557 * 61.23863 * 7 6 4 9 9 N 1.46929 * 109.01017 * 305.59308 * 8 7 6 10 10 S 1.65596 * 120.62813 * 233.58315 * 9 8 7 11 11 O 1.42098 * 106.40345 * 156.17730 * 10 9 8 12 12 O 1.42094 * 106.40745 * 23.25562 * 10 9 8 13 13 N 1.65606 * 107.21969 * 269.71621 * 10 9 8 14 14 C 1.46499 * 120.00003 * 89.99706 * 13 10 9 15 15 C 1.46502 * 119.99935 * 270.00204 * 13 10 9 16 16 C 1.50695 * 109.47115 * 264.99495 * 15 13 10 17 17 H 1.07995 * 120.00143 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99827 * 179.97438 * 16 15 13 19 19 N 1.31515 * 119.99944 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00207 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47091 * 89.99714 * 20 18 16 22 22 H 1.48503 * 109.46995 * 209.99476 * 20 18 16 23 23 H 1.48499 * 109.46654 * 329.99499 * 20 18 16 24 24 C 1.46929 * 118.73879 * 53.30396 * 9 8 7 25 25 H 1.08999 * 109.47407 * 59.99632 * 1 2 3 26 26 H 1.09004 * 109.46833 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47011 * 299.99266 * 1 2 3 28 28 H 1.09004 * 109.47011 * 240.00733 * 2 1 3 29 29 H 1.09004 * 109.46655 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47464 * 300.00333 * 3 2 1 31 31 H 1.09004 * 109.46762 * 60.00581 * 3 2 1 32 32 H 1.08997 * 109.45911 * 298.68845 * 6 4 2 33 33 H 1.09003 * 109.45612 * 58.66340 * 6 4 2 34 34 H 1.08992 * 109.49851 * 181.32136 * 7 6 4 35 35 H 1.09007 * 109.49420 * 301.41478 * 7 6 4 36 36 H 1.08998 * 109.51550 * 185.70815 * 8 7 6 37 37 H 1.09008 * 109.43088 * 65.42016 * 8 7 6 38 38 H 1.09002 * 109.47391 * 270.00374 * 14 13 10 39 39 H 1.09001 * 109.46813 * 150.00430 * 14 13 10 40 40 H 1.09004 * 109.47041 * 30.00557 * 14 13 10 41 41 H 1.08999 * 109.47026 * 24.99991 * 15 13 10 42 42 H 1.09005 * 109.46953 * 144.99617 * 15 13 10 43 43 H 0.97000 * 120.00228 * 180.02562 * 19 18 16 44 44 H 1.08995 * 109.58632 * 66.43609 * 24 9 8 45 45 H 1.09000 * 109.58550 * 186.71669 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6779 -0.2073 2.1394 6 6 3.5705 -0.7252 1.2484 7 6 4.0811 -1.4173 2.5142 8 6 3.5936 -2.8649 2.5323 9 7 2.1319 -2.8796 2.3839 10 16 1.1808 -3.6796 3.4783 11 8 -0.1027 -3.0735 3.4130 12 8 1.9377 -3.7697 4.6775 13 7 0.9947 -5.2295 2.9253 14 6 1.9481 -6.2684 3.3225 15 6 -0.1234 -5.5616 2.0388 16 6 -1.2701 -6.0985 2.8561 17 1 -1.1756 -6.1834 3.9285 18 6 -2.4401 -6.4803 2.2347 19 7 -3.4407 -6.9493 2.9478 20 14 -2.6039 -6.3327 0.3797 21 1 -2.1450 -7.5921 -0.2595 22 1 -4.0252 -6.0874 0.0261 23 1 -1.7715 -5.2012 -0.1021 24 6 1.5298 -2.1657 1.2496 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9565 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 3.9318 -1.2608 0.3706 33 1 3.9361 0.3014 1.2235 34 1 5.1708 -1.3990 2.5245 35 1 3.6997 -0.8966 3.3926 36 1 3.8695 -3.3302 3.4786 37 1 4.0501 -3.4116 1.7070 38 1 2.7667 -6.3043 2.6037 39 1 1.4436 -7.2343 3.3471 40 1 2.3434 -6.0395 4.3122 41 1 -0.4442 -4.6656 1.5073 42 1 0.1949 -6.3163 1.3196 43 1 -4.2637 -7.2183 2.5106 44 1 1.8145 -2.6542 0.3178 45 1 0.4443 -2.1720 1.3486 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444279332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:46 Heat of formation + Delta-G solvation = -90.373364 kcal Electronic energy + Delta-G solvation = -25105.516261 eV Core-core repulsion = 21670.233317 eV Total energy + Delta-G solvation = -3435.282944 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.18270 -36.75229 -35.60968 -35.46220 -35.18794 -32.38401 -32.11368 -29.88872 -28.38119 -27.44497 -25.17987 -24.19513 -23.58868 -21.86732 -20.87002 -19.84282 -18.43598 -17.43826 -16.94131 -16.63962 -15.90153 -15.19907 -14.85109 -14.54099 -14.26350 -14.14761 -13.85867 -13.64931 -13.64216 -13.13815 -12.99435 -12.59220 -12.45779 -12.40390 -12.17120 -12.01939 -11.78380 -11.53996 -11.52351 -11.29489 -11.26492 -11.25426 -11.02163 -10.99890 -10.67514 -10.61802 -10.53202 -10.30762 -10.21022 -10.18130 -9.55684 -8.86266 -8.59706 -8.09821 -6.08414 -4.07708 1.11310 3.24959 3.31973 3.32813 3.42626 4.01227 4.37634 4.52911 4.58487 4.72159 4.86978 4.98604 5.04376 5.05453 5.21482 5.28946 5.31401 5.44986 5.49683 5.57335 5.58587 5.61191 5.71296 5.77154 5.78059 5.83710 5.86248 5.92854 5.95287 6.00223 6.07976 6.17868 6.19693 6.28931 6.35490 6.40802 6.45291 6.67015 6.77849 7.08496 7.40771 7.57797 8.49019 8.96520 9.50523 11.05244 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015235 B = 0.005747 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.433072 B = 4871.222137 C = 6069.729721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.090 4.090 3 C -0.147 4.147 4 C -0.096 4.096 5 H 0.076 0.924 6 C -0.112 4.112 7 C -0.132 4.132 8 C 0.120 3.880 9 N -1.012 6.012 10 S 2.780 3.220 11 O -0.959 6.959 12 O -0.992 6.992 13 N -0.992 5.992 14 C 0.095 3.905 15 C 0.228 3.772 16 C -0.531 4.531 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.873 3.127 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.264 1.264 24 C 0.122 3.878 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.028 0.972 43 H 0.265 0.735 44 H 0.064 0.936 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.874 12.273 -7.260 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.116 4.116 5 H 0.094 0.906 6 C -0.150 4.150 7 C -0.171 4.171 8 C -0.006 4.006 9 N -0.850 5.850 10 S 2.790 3.210 11 O -0.943 6.943 12 O -0.976 6.976 13 N -0.833 5.833 14 C -0.052 4.052 15 C 0.105 3.895 16 C -0.571 4.571 17 H 0.095 0.905 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.699 3.301 21 H -0.201 1.201 22 H -0.208 1.208 23 H -0.189 1.189 24 C -0.004 4.004 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.303 12.525 -6.469 20.806 hybrid contribution -0.128 -0.248 -1.317 1.346 sum 15.175 12.277 -7.786 21.015 Atomic orbital electron populations 1.21945 0.94893 1.02620 1.01820 1.21107 0.96068 0.96037 0.97680 1.21883 1.00929 0.95961 1.01652 1.21551 0.95660 0.95695 0.98658 0.90596 1.21586 0.95036 1.00514 0.97829 1.21795 1.00360 0.96140 0.98797 1.21267 0.79741 0.97271 1.02348 1.58445 1.16286 1.66870 1.43386 1.02032 0.72878 0.72997 0.73138 1.93617 1.38586 1.75882 1.86191 1.93511 1.73318 1.87136 1.43624 1.57468 1.36703 1.24432 1.64714 1.21370 0.91416 0.93421 0.98968 1.19419 0.84077 0.96464 0.89570 1.21379 0.97034 1.42524 0.96117 0.90469 1.24871 0.95469 0.94520 0.98093 1.69896 1.04697 1.43021 1.35702 0.86909 0.77987 0.78960 0.86202 1.20057 1.20833 1.18897 1.21523 0.98872 0.91285 0.88715 0.92788 0.91914 0.92357 0.91112 0.92518 0.92883 0.92697 0.91902 0.91593 0.91006 0.91527 0.89247 0.91885 0.94258 0.90196 0.91369 0.95044 0.95432 0.92518 0.91775 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.85 37.16 0.33 -1.36 16 2 C -0.09 -0.87 2.51 -90.62 -0.23 -1.10 16 3 C -0.15 -1.21 8.85 37.16 0.33 -0.89 16 4 C -0.10 -1.07 1.92 -90.50 -0.17 -1.25 16 5 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 6 C -0.11 -1.05 4.86 -26.69 -0.13 -1.18 16 7 C -0.13 -1.32 6.06 -26.84 -0.16 -1.48 16 8 C 0.12 1.43 6.45 -3.93 -0.03 1.40 16 9 N -1.01 -15.26 3.35 -113.77 -0.38 -15.64 16 10 S 2.78 55.48 6.10 -107.50 -0.66 54.82 16 11 O -0.96 -22.76 15.70 -57.18 -0.90 -23.66 16 12 O -0.99 -20.72 15.32 -57.18 -0.88 -21.60 16 13 N -0.99 -20.38 3.23 -123.05 -0.40 -20.78 16 14 C 0.09 1.61 10.68 59.85 0.64 2.25 16 15 C 0.23 5.39 4.15 -5.19 -0.02 5.37 16 16 C -0.53 -15.24 9.94 -34.44 -0.34 -15.59 16 17 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 18 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 19 N -0.89 -27.61 13.96 55.43 0.77 -26.83 16 20 Si 0.87 21.03 27.47 -169.99 -4.67 16.36 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 24 C 0.12 1.67 5.23 -3.71 -0.02 1.66 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.76 6.56 -51.93 -0.34 0.42 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.42 6.41 -51.93 -0.33 0.09 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.54 6.37 -51.93 -0.33 0.21 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.11 6.91 -51.93 -0.36 0.75 16 37 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 40 H 0.07 1.11 7.02 -51.93 -0.36 0.75 16 41 H 0.03 0.75 6.67 -51.93 -0.35 0.40 16 42 H 0.03 0.61 7.54 -51.93 -0.39 0.22 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.10 1.52 5.53 -51.93 -0.29 1.23 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -33.92 355.98 -9.48 -43.40 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.83 Total: -1.31 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 0.10 Total: -10.13 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: 0.00 Total: -63.25 kcal Atomic # 8 Polarization: -43.48 SS G_CDS: -1.77 Total: -45.26 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Atomic # 16 Polarization: 55.48 SS G_CDS: -0.66 Total: 54.82 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.92 -9.48 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444279332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.975 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds