Wall clock time and date at job start Tue Mar 31 2020 08:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46755 * 2 1 4 4 C 1.52998 * 109.47473 * 120.00398 * 2 1 3 5 5 H 1.08992 * 109.49810 * 299.93592 * 4 2 1 6 6 C 1.53044 * 109.52358 * 179.85371 * 4 2 1 7 7 C 1.53039 * 109.53727 * 178.66753 * 6 4 2 8 8 C 1.52756 * 109.38557 * 61.23863 * 7 6 4 9 9 N 1.46929 * 109.01017 * 305.59308 * 8 7 6 10 10 S 1.65596 * 120.62813 * 233.58315 * 9 8 7 11 11 O 1.42098 * 106.40345 * 156.17730 * 10 9 8 12 12 O 1.42094 * 106.40745 * 23.25562 * 10 9 8 13 13 N 1.65606 * 107.21969 * 269.71621 * 10 9 8 14 14 C 1.46499 * 120.00003 * 89.99706 * 13 10 9 15 15 C 1.46502 * 119.99935 * 270.00204 * 13 10 9 16 16 C 1.50695 * 109.47115 * 264.99495 * 15 13 10 17 17 H 1.07995 * 120.00143 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99827 * 179.97438 * 16 15 13 19 19 N 1.31515 * 119.99944 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00207 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47091 * 89.99714 * 20 18 16 22 22 H 1.48503 * 109.46995 * 209.99476 * 20 18 16 23 23 H 1.48499 * 109.46654 * 329.99499 * 20 18 16 24 24 C 1.46929 * 118.73879 * 53.30396 * 9 8 7 25 25 H 1.08999 * 109.47407 * 59.99632 * 1 2 3 26 26 H 1.09004 * 109.46833 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47011 * 299.99266 * 1 2 3 28 28 H 1.09004 * 109.47011 * 240.00733 * 2 1 3 29 29 H 1.09004 * 109.46655 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47464 * 300.00333 * 3 2 1 31 31 H 1.09004 * 109.46762 * 60.00581 * 3 2 1 32 32 H 1.08997 * 109.45911 * 298.68845 * 6 4 2 33 33 H 1.09003 * 109.45612 * 58.66340 * 6 4 2 34 34 H 1.08992 * 109.49851 * 181.32136 * 7 6 4 35 35 H 1.09007 * 109.49420 * 301.41478 * 7 6 4 36 36 H 1.08998 * 109.51550 * 185.70815 * 8 7 6 37 37 H 1.09008 * 109.43088 * 65.42016 * 8 7 6 38 38 H 1.09002 * 109.47391 * 270.00374 * 14 13 10 39 39 H 1.09001 * 109.46813 * 150.00430 * 14 13 10 40 40 H 1.09004 * 109.47041 * 30.00557 * 14 13 10 41 41 H 1.08999 * 109.47026 * 24.99991 * 15 13 10 42 42 H 1.09005 * 109.46953 * 144.99617 * 15 13 10 43 43 H 0.97000 * 120.00228 * 180.02562 * 19 18 16 44 44 H 1.08995 * 109.58632 * 66.43609 * 24 9 8 45 45 H 1.09000 * 109.58550 * 186.71669 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6779 -0.2073 2.1394 6 6 3.5705 -0.7252 1.2484 7 6 4.0811 -1.4173 2.5142 8 6 3.5936 -2.8649 2.5323 9 7 2.1319 -2.8796 2.3839 10 16 1.1808 -3.6796 3.4783 11 8 -0.1027 -3.0735 3.4130 12 8 1.9377 -3.7697 4.6775 13 7 0.9947 -5.2295 2.9253 14 6 1.9481 -6.2684 3.3225 15 6 -0.1234 -5.5616 2.0388 16 6 -1.2701 -6.0985 2.8561 17 1 -1.1756 -6.1834 3.9285 18 6 -2.4401 -6.4803 2.2347 19 7 -3.4407 -6.9493 2.9478 20 14 -2.6039 -6.3327 0.3797 21 1 -2.1450 -7.5921 -0.2595 22 1 -4.0252 -6.0874 0.0261 23 1 -1.7715 -5.2012 -0.1021 24 6 1.5298 -2.1657 1.2496 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9565 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 3.9318 -1.2608 0.3706 33 1 3.9361 0.3014 1.2235 34 1 5.1708 -1.3990 2.5245 35 1 3.6997 -0.8966 3.3926 36 1 3.8695 -3.3302 3.4786 37 1 4.0501 -3.4116 1.7070 38 1 2.7667 -6.3043 2.6037 39 1 1.4436 -7.2343 3.3471 40 1 2.3434 -6.0395 4.3122 41 1 -0.4442 -4.6656 1.5073 42 1 0.1949 -6.3163 1.3196 43 1 -4.2637 -7.2183 2.5106 44 1 1.8145 -2.6542 0.3178 45 1 0.4443 -2.1720 1.3486 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444279332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:45 Heat of formation + Delta-G solvation = -114.429038 kcal Electronic energy + Delta-G solvation = -25106.559393 eV Core-core repulsion = 21670.233317 eV Total energy + Delta-G solvation = -3436.326076 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.09406 -38.41904 -37.30564 -36.89396 -36.36347 -34.52468 -33.05543 -30.79035 -30.28268 -28.21829 -26.82509 -25.18373 -24.50539 -23.79160 -21.78183 -20.66985 -19.82306 -19.22135 -18.65740 -18.32709 -17.36109 -16.48293 -16.09955 -15.92074 -15.36432 -15.23900 -14.99507 -14.94062 -14.60423 -14.49927 -14.44274 -14.09485 -13.95328 -13.47282 -13.40646 -13.30124 -13.15159 -13.01927 -12.99860 -12.91726 -12.41218 -12.38388 -12.29132 -12.16281 -12.01539 -11.95016 -11.75273 -11.72464 -11.48700 -11.16062 -11.05032 -10.79286 -9.98419 -9.74777 -8.30632 -6.36997 -0.42749 1.34663 1.39562 1.48986 2.00325 2.34254 2.51041 3.02945 3.30659 3.63614 3.81835 3.92059 4.01940 4.11836 4.14846 4.23942 4.41405 4.47820 4.57079 4.63543 4.65650 4.69697 4.80051 4.81606 4.83798 4.87343 4.91897 4.99343 5.03841 5.05113 5.07039 5.15668 5.23885 5.28875 5.29851 5.37816 5.44034 5.46735 5.53610 5.59568 5.63072 5.84842 6.28920 6.65592 7.26141 8.87212 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015235 B = 0.005747 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.433072 B = 4871.222137 C = 6069.729721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.094 4.094 5 H 0.055 0.945 6 C -0.107 4.107 7 C -0.131 4.131 8 C 0.110 3.890 9 N -1.001 6.001 10 S 2.788 3.212 11 O -1.008 7.008 12 O -1.009 7.009 13 N -1.002 6.002 14 C 0.088 3.912 15 C 0.237 3.763 16 C -0.545 4.545 17 H 0.024 0.976 18 C 0.007 3.993 19 N -0.949 5.949 20 Si 0.945 3.055 21 H -0.252 1.252 22 H -0.283 1.283 23 H -0.238 1.238 24 C 0.115 3.885 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.034 0.966 42 H 0.054 0.946 43 H 0.268 0.732 44 H 0.087 0.913 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.869 13.294 -10.692 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.104 4.104 3 C -0.201 4.201 4 C -0.114 4.114 5 H 0.074 0.926 6 C -0.144 4.144 7 C -0.170 4.170 8 C -0.015 4.015 9 N -0.843 5.843 10 S 2.798 3.202 11 O -0.992 6.992 12 O -0.993 6.993 13 N -0.842 5.842 14 C -0.057 4.057 15 C 0.112 3.888 16 C -0.585 4.585 17 H 0.042 0.958 18 C -0.191 4.191 19 N -0.589 5.589 20 Si 0.767 3.233 21 H -0.177 1.177 22 H -0.209 1.209 23 H -0.162 1.162 24 C -0.010 4.010 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.105 0.895 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 18.336 13.536 -9.874 24.838 hybrid contribution -1.021 -0.545 -0.116 1.163 sum 17.315 12.992 -9.990 23.841 Atomic orbital electron populations 1.21981 0.96262 1.01515 1.01889 1.21095 0.94892 0.97089 0.97321 1.21859 1.01806 0.94669 1.01757 1.21551 0.97440 0.93733 0.98689 0.92639 1.21589 0.92984 1.01818 0.98026 1.21835 1.02118 0.94437 0.98614 1.21637 0.77368 0.99238 1.03231 1.58046 1.17438 1.65857 1.42918 1.01487 0.72267 0.72955 0.73477 1.93549 1.41766 1.76830 1.87035 1.93475 1.73300 1.87377 1.45144 1.57435 1.36728 1.25593 1.64474 1.21594 0.91760 0.91911 1.00456 1.19186 0.83370 0.96732 0.89516 1.21701 0.99526 1.42849 0.94376 0.95752 1.25965 0.94735 0.93813 1.04571 1.70078 1.05627 1.44670 1.38530 0.85758 0.78386 0.80728 0.78463 1.17651 1.20862 1.16156 1.21728 0.97497 0.93088 0.88733 0.91378 0.93615 0.93660 0.89630 0.91042 0.91983 0.93468 0.90154 0.89823 0.87967 0.93160 0.89996 0.88928 0.89829 0.91317 0.91290 0.94809 0.92797 0.92301 0.89461 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 8.85 71.98 0.64 -2.68 16 2 C -0.08 -1.44 2.51 -10.79 -0.03 -1.47 16 3 C -0.14 -1.95 8.85 71.98 0.64 -1.31 16 4 C -0.09 -1.92 1.92 -10.72 -0.02 -1.94 16 5 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 6 C -0.11 -1.58 4.86 30.62 0.15 -1.43 16 7 C -0.13 -2.19 6.06 30.53 0.19 -2.00 16 8 C 0.11 2.30 6.45 86.22 0.56 2.86 16 9 N -1.00 -28.83 3.35 -513.84 -1.72 -30.56 16 10 S 2.79 112.95 6.10 -56.49 -0.34 112.60 16 11 O -1.01 -50.07 15.70 -128.00 -2.01 -52.08 16 12 O -1.01 -42.91 15.32 -128.00 -1.96 -44.87 16 13 N -1.00 -41.01 3.23 -543.22 -1.75 -42.77 16 14 C 0.09 2.91 10.68 127.77 1.36 4.27 16 15 C 0.24 11.08 4.15 85.63 0.36 11.44 16 16 C -0.55 -32.39 9.94 25.60 0.25 -32.13 16 17 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 18 C 0.01 0.41 5.47 84.65 0.46 0.87 16 19 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 20 Si 0.95 42.92 27.47 68.60 1.88 44.81 16 21 H -0.25 -10.52 7.11 99.48 0.71 -9.82 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 24 C 0.11 2.98 5.23 86.36 0.45 3.43 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.04 1.09 6.56 -2.38 -0.02 1.08 16 27 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.07 0.77 6.41 -2.38 -0.02 0.76 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 0.99 6.37 -2.39 -0.02 0.97 16 34 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 35 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.08 1.86 6.91 -2.39 -0.02 1.84 16 37 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 40 H 0.07 2.24 7.02 -2.38 -0.02 2.22 16 41 H 0.03 1.58 6.67 -2.39 -0.02 1.56 16 42 H 0.05 2.26 7.54 -2.38 -0.02 2.24 16 43 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 44 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.07 2.17 5.53 -2.39 -0.01 2.16 16 Total: -1.00 -78.37 355.98 0.29 -78.08 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.89 Total: 15.43 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 5.00 Total: -20.10 kcal Atomic # 7 Polarization: -130.67 SS G_CDS: -3.18 Total: -133.85 kcal Atomic # 8 Polarization: -92.98 SS G_CDS: -3.97 Total: -96.95 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.81 kcal Atomic # 16 Polarization: 112.95 SS G_CDS: -0.34 Total: 112.60 kcal Total: -78.37 0.29 -78.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444279332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.353 kcal (2) G-P(sol) polarization free energy of solvation -78.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds