Wall clock time and date at job start Tue Mar 31 2020 08:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47429 * 2 1 4 4 C 1.52996 * 109.47476 * 120.00575 * 2 1 3 5 5 H 1.09007 * 109.49604 * 299.93468 * 4 2 1 6 6 C 1.53039 * 109.49902 * 59.99510 * 4 2 1 7 7 C 1.53044 * 109.53727 * 181.35324 * 6 4 2 8 8 C 1.53189 * 109.31208 * 298.63114 * 7 6 4 9 9 N 1.46929 * 108.77361 * 54.63888 * 8 7 6 10 10 S 1.65596 * 120.63249 * 126.36485 * 9 8 7 11 11 O 1.42098 * 106.40345 * 336.46179 * 10 9 8 12 12 O 1.42094 * 106.40745 * 203.54011 * 10 9 8 13 13 N 1.65606 * 107.21969 * 90.00070 * 10 9 8 14 14 C 1.46499 * 120.00003 * 89.99706 * 13 10 9 15 15 C 1.46502 * 119.99935 * 270.00204 * 13 10 9 16 16 C 1.50695 * 109.47115 * 264.99495 * 15 13 10 17 17 H 1.07995 * 120.00143 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99827 * 179.97438 * 16 15 13 19 19 N 1.31515 * 119.99944 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00207 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47091 * 89.99714 * 20 18 16 22 22 H 1.48503 * 109.46995 * 209.99476 * 20 18 16 23 23 H 1.48499 * 109.46654 * 329.99499 * 20 18 16 24 24 C 1.46929 * 118.73879 * 306.64405 * 9 8 7 25 25 H 1.09008 * 109.46687 * 299.99870 * 1 2 3 26 26 H 1.08995 * 109.47218 * 59.99263 * 1 2 3 27 27 H 1.09000 * 109.47362 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46687 * 240.00130 * 2 1 3 29 29 H 1.09003 * 109.47224 * 300.00354 * 3 2 1 30 30 H 1.09000 * 109.47069 * 60.00039 * 3 2 1 31 31 H 1.08994 * 109.47057 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46132 * 61.33367 * 6 4 2 33 33 H 1.09003 * 109.44912 * 301.36165 * 6 4 2 34 34 H 1.09004 * 109.49450 * 178.68407 * 7 6 4 35 35 H 1.08994 * 109.52745 * 58.60319 * 7 6 4 36 36 H 1.08995 * 109.59164 * 294.85014 * 8 7 6 37 37 H 1.09002 * 109.58689 * 174.41757 * 8 7 6 38 38 H 1.09002 * 109.47391 * 270.00374 * 14 13 10 39 39 H 1.09001 * 109.46813 * 150.00430 * 14 13 10 40 40 H 1.09004 * 109.47041 * 30.00557 * 14 13 10 41 41 H 1.08999 * 109.47026 * 24.99991 * 15 13 10 42 42 H 1.09005 * 109.46953 * 144.99617 * 15 13 10 43 43 H 0.97000 * 120.00228 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.58505 * 173.14588 * 24 9 8 45 45 H 1.09008 * 109.57926 * 293.56872 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6779 -0.2072 2.1395 6 6 1.5302 -2.1643 1.2497 7 6 2.0120 -2.8768 2.5156 8 6 3.5435 -2.9052 2.5292 9 7 4.0433 -1.5313 2.3828 10 16 5.1169 -0.9031 3.4759 11 8 4.9484 -1.6452 4.6759 12 8 4.9769 0.5094 3.4096 13 7 6.6389 -1.2485 2.9223 14 6 7.3266 -0.3076 2.0346 15 6 7.2977 -2.4951 3.3202 16 6 8.1805 -2.2379 4.5141 17 1 8.2441 -1.2452 4.9348 18 6 8.9061 -3.2700 5.0701 19 7 9.6769 -3.0454 6.1118 20 14 8.7955 -4.9872 4.3430 21 1 9.8365 -5.1496 3.2965 22 1 9.0094 -5.9931 5.4143 23 1 7.4526 -5.1838 3.7402 24 6 3.5676 -0.7233 1.2516 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5139 -0.8901 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.9129 -2.6850 0.3720 33 1 0.4404 -2.1642 1.2255 34 1 1.6291 -3.8973 2.5267 35 1 1.6501 -2.3429 3.3942 36 1 3.9051 -3.5157 1.7018 37 1 3.8929 -3.3223 3.4737 38 1 7.0923 -0.5489 0.9977 39 1 8.4028 -0.3814 2.1905 40 1 6.9962 0.7075 2.2550 41 1 6.5434 -3.2380 3.5793 42 1 7.9037 -2.8658 2.4934 43 1 10.1876 -3.7715 6.5027 44 1 3.9329 0.2986 1.3534 45 1 3.9312 -1.1523 0.3178 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444279333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:50 Heat of formation + Delta-G solvation = -90.356169 kcal Electronic energy + Delta-G solvation = -24973.126993 eV Core-core repulsion = 21537.844794 eV Total energy + Delta-G solvation = -3435.282198 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.22420 -36.74934 -35.60996 -35.49953 -35.18114 -32.38368 -32.11171 -29.92155 -28.38222 -27.53644 -25.17733 -24.22225 -23.59221 -21.88146 -20.87769 -19.90373 -18.43907 -17.43985 -16.93622 -16.63619 -15.92943 -15.22570 -14.87238 -14.51025 -14.29638 -14.17884 -13.96539 -13.67128 -13.54556 -13.23161 -12.95068 -12.65857 -12.46345 -12.41180 -12.27278 -12.00190 -11.78428 -11.63298 -11.52082 -11.29878 -11.29456 -11.25352 -11.04483 -10.99454 -10.73944 -10.61879 -10.53341 -10.32564 -10.24602 -10.18969 -9.55612 -8.86508 -8.59638 -8.09846 -6.08326 -4.07712 1.11293 3.25284 3.32217 3.33206 3.42596 4.00942 4.37821 4.49643 4.53605 4.67721 4.85302 4.96965 5.01055 5.04737 5.20784 5.28127 5.29221 5.41026 5.46488 5.49826 5.54885 5.57825 5.67915 5.73311 5.76045 5.78552 5.85277 5.90996 5.93819 5.94875 6.02380 6.15357 6.18272 6.20475 6.34396 6.36662 6.44559 6.66988 6.77843 7.08537 7.40786 7.57878 8.49065 8.96515 9.50544 11.05310 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.004533 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.227317 B = 6176.003029 C = 6674.031482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.153 4.153 4 C -0.096 4.096 5 H 0.075 0.925 6 C -0.112 4.112 7 C -0.132 4.132 8 C 0.117 3.883 9 N -1.012 6.012 10 S 2.780 3.220 11 O -0.960 6.960 12 O -0.991 6.991 13 N -0.992 5.992 14 C 0.095 3.905 15 C 0.228 3.772 16 C -0.532 4.532 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.874 3.126 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.265 1.265 24 C 0.124 3.876 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.028 0.972 43 H 0.265 0.735 44 H 0.091 0.909 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.729 2.712 -15.224 22.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.211 4.211 4 C -0.117 4.117 5 H 0.093 0.907 6 C -0.150 4.150 7 C -0.171 4.171 8 C -0.008 4.008 9 N -0.850 5.850 10 S 2.790 3.210 11 O -0.944 6.944 12 O -0.975 6.975 13 N -0.833 5.833 14 C -0.052 4.052 15 C 0.105 3.895 16 C -0.571 4.571 17 H 0.095 0.905 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.700 3.300 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.189 1.189 24 C -0.002 4.002 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.110 0.890 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.776 3.086 -14.287 22.251 hybrid contribution 0.251 -1.183 -0.596 1.348 sum -16.526 1.903 -14.883 22.321 Atomic orbital electron populations 1.21884 0.95236 1.01763 1.01623 1.21105 0.95783 0.96250 0.97731 1.21929 1.01554 0.95799 1.01787 1.21479 0.95337 0.96277 0.98560 0.90655 1.21589 1.00376 0.95029 0.97978 1.21874 0.95679 1.00907 0.98628 1.21411 0.94277 0.82200 1.02942 1.58445 1.60398 1.22707 1.43436 1.02030 0.72509 0.73042 0.73458 1.93617 1.85524 1.73024 1.42194 1.93511 1.86550 1.30334 1.87123 1.57467 1.31873 1.30917 1.63054 1.21370 0.99928 0.92158 0.91724 1.19420 0.93513 0.80647 0.95956 1.21386 1.25155 0.98149 1.12433 0.90467 1.24878 0.94761 0.98703 0.94654 1.69897 1.28313 1.32716 1.22392 0.86893 0.79003 0.84806 0.79252 1.20047 1.20839 1.18921 1.21379 0.94208 0.95635 0.88974 0.92698 0.92886 0.92410 0.91098 0.92807 0.92433 0.92141 0.91896 0.91598 0.90922 0.91457 0.91733 0.88774 0.94272 0.90190 0.91363 0.95023 0.95418 0.92513 0.89039 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.84 37.16 0.33 -0.76 16 2 C -0.09 -0.75 2.51 -90.62 -0.23 -0.98 16 3 C -0.15 -1.32 8.84 37.16 0.33 -0.99 16 4 C -0.10 -1.00 1.91 -90.73 -0.17 -1.17 16 5 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 6 C -0.11 -1.05 4.85 -26.69 -0.13 -1.18 16 7 C -0.13 -1.43 6.08 -26.61 -0.16 -1.60 16 8 C 0.12 1.59 6.48 -3.71 -0.02 1.56 16 9 N -1.01 -15.26 3.35 -113.76 -0.38 -15.64 16 10 S 2.78 55.52 6.10 -107.50 -0.66 54.87 16 11 O -0.96 -22.89 15.70 -57.18 -0.90 -23.78 16 12 O -0.99 -20.64 15.32 -57.18 -0.88 -21.51 16 13 N -0.99 -20.40 3.23 -123.05 -0.40 -20.80 16 14 C 0.09 1.61 10.68 59.85 0.64 2.25 16 15 C 0.23 5.40 4.15 -5.19 -0.02 5.38 16 16 C -0.53 -15.30 9.94 -34.44 -0.34 -15.64 16 17 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 18 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.89 -27.64 13.96 55.43 0.77 -26.86 16 20 Si 0.87 21.06 27.47 -169.99 -4.67 16.39 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 24 C 0.12 1.51 5.21 -3.93 -0.02 1.49 16 25 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.40 6.40 -51.93 -0.33 0.07 16 28 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.54 6.36 -51.93 -0.33 0.21 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.45 6.92 -51.93 -0.36 1.09 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 40 H 0.07 1.11 7.02 -51.93 -0.36 0.75 16 41 H 0.03 0.75 6.67 -51.93 -0.35 0.41 16 42 H 0.03 0.62 7.54 -51.93 -0.39 0.22 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.09 1.17 5.52 -51.93 -0.29 0.89 16 45 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -34.01 355.98 -9.47 -43.48 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.83 Total: -1.88 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 0.10 Total: -9.62 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: 0.00 Total: -63.31 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -1.77 Total: -45.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 16 Polarization: 55.52 SS G_CDS: -0.66 Total: 54.87 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.01 -9.47 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444279333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.873 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds