Wall clock time and date at job start Tue Mar 31 2020 09:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47080 * 2 1 4 4 H 1.08997 * 110.01982 * 306.38822 * 3 2 1 5 5 C 1.54264 * 110.03309 * 67.83839 * 3 2 1 6 6 C 1.54889 * 104.19952 * 95.66956 * 5 3 2 7 7 C 1.54894 * 102.74670 * 37.94520 * 6 5 3 8 8 C 1.53883 * 110.03044 * 185.00201 * 3 2 1 9 9 H 1.08999 * 110.03542 * 0.02562 * 8 3 2 10 10 C 1.52996 * 110.03160 * 121.43357 * 8 3 2 11 11 N 1.46503 * 109.46913 * 185.00065 * 10 8 3 12 12 S 1.65606 * 119.99661 * 164.44214 * 11 10 8 13 13 O 1.42104 * 106.39831 * 176.26449 * 12 11 10 14 14 O 1.42094 * 106.40355 * 309.18534 * 12 11 10 15 15 N 1.65606 * 107.21918 * 62.72693 * 12 11 10 16 16 C 1.46496 * 119.99530 * 273.06277 * 15 12 11 17 17 C 1.46493 * 119.99974 * 93.05950 * 15 12 11 18 18 C 1.50703 * 109.47146 * 95.55752 * 17 15 12 19 19 H 1.08002 * 119.99464 * 4.95389 * 18 17 15 20 20 C 1.37874 * 120.00395 * 184.95750 * 18 17 15 21 21 N 1.31507 * 120.00204 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99640 * 359.97438 * 20 18 17 23 23 H 1.48510 * 109.47055 * 90.00374 * 22 20 18 24 24 H 1.48498 * 109.47088 * 209.99830 * 22 20 18 25 25 H 1.48497 * 109.47401 * 330.00478 * 22 20 18 26 26 H 1.08999 * 109.47434 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47193 * 299.99776 * 1 2 3 28 28 H 1.08997 * 109.47459 * 59.99628 * 1 2 3 29 29 H 1.08997 * 109.47459 * 120.00372 * 2 1 3 30 30 H 1.08999 * 109.47054 * 240.00310 * 2 1 3 31 31 H 1.08999 * 110.48804 * 214.34917 * 5 3 2 32 32 H 1.08994 * 110.48300 * 336.99343 * 5 3 2 33 33 H 1.08997 * 110.76201 * 279.63480 * 6 5 3 34 34 H 1.09000 * 110.91504 * 156.32517 * 6 5 3 35 35 H 1.08998 * 110.48669 * 203.38011 * 7 6 5 36 36 H 1.09003 * 110.60301 * 80.78815 * 7 6 5 37 37 H 1.09000 * 109.46781 * 304.99702 * 10 8 3 38 38 H 1.08999 * 109.47407 * 64.99692 * 10 8 3 39 39 H 0.96998 * 120.00073 * 344.44128 * 11 10 8 40 40 H 1.08999 * 109.47270 * 90.00173 * 16 15 12 41 41 H 1.09005 * 109.46868 * 209.99811 * 16 15 12 42 42 H 1.08999 * 109.47459 * 329.99610 * 16 15 12 43 43 H 1.09002 * 109.46973 * 215.55546 * 17 15 12 44 44 H 1.08998 * 109.47365 * 335.55801 * 17 15 12 45 45 H 0.97008 * 119.99761 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5915 1.9968 -0.8244 5 6 1.7006 2.1230 1.3422 6 6 2.9863 1.9543 2.1894 7 6 4.1125 2.1495 1.1440 8 6 3.5735 1.4594 -0.1261 9 1 3.9543 0.4400 -0.1877 10 6 3.9885 2.2500 -1.3684 11 7 5.4402 2.1583 -1.5431 12 16 6.1283 2.5793 -2.9894 13 8 7.5339 2.4670 -2.8128 14 8 5.4125 1.8747 -3.9945 15 7 5.8145 4.1872 -3.2320 16 6 4.5670 4.6003 -3.8794 17 6 6.7844 5.1962 -2.7993 18 6 7.6674 5.5747 -3.9603 19 1 7.4706 5.1709 -4.9425 20 6 8.7265 6.4365 -3.7688 21 7 9.4973 6.7664 -4.7819 22 14 9.0663 7.1354 -2.0701 23 1 9.9914 6.2323 -1.3393 24 1 9.6871 8.4780 -2.2024 25 1 7.7910 7.2515 -1.3183 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 0.8899 30 1 1.8932 -0.5138 -0.8900 31 1 1.4804 3.1795 1.1894 32 1 0.8595 1.6224 1.8217 33 1 3.0333 0.9567 2.6259 34 1 3.0436 2.7172 2.9658 35 1 5.0314 1.6683 1.4789 36 1 4.2839 3.2099 0.9584 37 1 3.4902 1.8367 -2.2453 38 1 3.7025 3.2947 -1.2466 39 1 5.9983 1.8510 -0.8117 40 1 3.7975 4.7515 -3.1223 41 1 4.7304 5.5313 -4.4223 42 1 4.2448 3.8257 -4.5753 43 1 6.2549 6.0795 -2.4424 44 1 7.3969 4.7898 -1.9944 45 1 10.2422 7.3731 -4.6472 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451752395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:55 Heat of formation + Delta-G solvation = -101.698047 kcal Electronic energy + Delta-G solvation = -24209.581910 eV Core-core repulsion = 20773.807891 eV Total energy + Delta-G solvation = -3435.774019 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.41396 -36.64716 -35.63904 -35.19263 -35.00406 -33.04132 -32.37834 -29.53804 -28.38821 -27.81874 -25.19131 -24.76979 -22.67674 -21.90587 -20.38436 -19.82983 -18.71982 -17.28464 -16.98122 -16.71936 -16.32400 -15.63621 -15.57496 -14.89947 -14.24254 -14.15209 -13.99522 -13.61819 -13.48317 -13.22172 -13.11123 -12.74972 -12.52521 -12.32913 -12.06506 -11.87657 -11.73993 -11.61490 -11.47935 -11.31472 -11.21070 -11.17096 -10.91539 -10.83132 -10.69922 -10.65096 -10.64400 -10.54762 -10.44139 -10.26523 -9.55776 -9.33494 -8.58636 -8.11877 -6.08078 -4.07519 1.17480 3.27674 3.33269 3.34949 3.47540 4.08732 4.32636 4.35258 4.39070 4.39127 4.85148 4.93927 4.95601 5.02540 5.10672 5.22143 5.23785 5.30106 5.36688 5.41934 5.44764 5.50623 5.53781 5.60258 5.68493 5.75622 5.79790 5.82250 5.86262 5.91654 6.01037 6.07308 6.12277 6.15482 6.23092 6.28829 6.45127 6.73045 7.00625 7.16056 7.44513 7.58660 8.49202 8.96563 9.51321 11.05467 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021297 B = 0.003924 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.417106 B = 7133.296789 C = 7708.552940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.088 4.088 4 H 0.076 0.924 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.124 4.124 8 C -0.096 4.096 9 H 0.081 0.919 10 C 0.127 3.873 11 N -1.135 6.135 12 S 2.783 3.217 13 O -0.964 6.964 14 O -0.994 6.994 15 N -0.990 5.990 16 C 0.093 3.907 17 C 0.229 3.771 18 C -0.534 4.534 19 H 0.078 0.922 20 C 0.073 3.927 21 N -0.895 5.895 22 Si 0.873 3.127 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.265 1.265 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.411 0.589 40 H 0.039 0.961 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.032 0.968 44 H 0.031 0.969 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.985 -10.106 14.025 24.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.107 4.107 4 H 0.094 0.906 5 C -0.159 4.159 6 C -0.161 4.161 7 C -0.161 4.161 8 C -0.115 4.115 9 H 0.099 0.901 10 C 0.000 4.000 11 N -0.894 5.894 12 S 2.790 3.210 13 O -0.948 6.948 14 O -0.977 6.977 15 N -0.832 5.832 16 C -0.053 4.053 17 C 0.105 3.895 18 C -0.573 4.573 19 H 0.096 0.904 20 C -0.129 4.129 21 N -0.533 5.533 22 Si 0.700 3.300 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.190 1.190 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.244 0.756 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.466 -10.494 13.212 24.285 hybrid contribution 0.410 0.631 1.339 1.536 sum -17.057 -9.863 14.551 24.494 Atomic orbital electron populations 1.21832 0.95960 1.01443 1.01885 1.21615 0.95753 0.96073 1.02068 1.21812 0.94251 0.96413 0.98247 0.90579 1.22465 0.97707 1.00497 0.95202 1.22474 0.94828 1.01365 0.97470 1.22485 0.98066 1.01190 0.94376 1.22081 0.95206 0.99988 0.94267 0.90067 1.21370 0.80075 0.99978 0.98563 1.56250 1.14952 1.83771 1.34451 1.01937 0.72963 0.73036 0.73065 1.93642 1.29267 1.86158 1.85734 1.93529 1.75268 1.71997 1.56893 1.57361 1.28222 1.24641 1.72994 1.21407 0.84482 1.02657 0.96799 1.19413 0.87005 0.86997 0.96062 1.21393 1.11774 1.28043 0.96119 0.90410 1.24876 0.95375 0.95932 0.96765 1.69898 1.17627 1.35068 1.30712 0.86901 0.79211 0.78810 0.85077 1.19742 1.20973 1.19014 0.92961 0.92621 0.92667 0.92001 0.91771 0.91588 0.91433 0.91737 0.91737 0.91627 0.90946 0.90739 0.91854 0.75575 0.94262 0.90143 0.91314 0.95047 0.95140 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.75 37.15 0.36 -0.64 16 2 C -0.12 -0.86 5.11 -26.73 -0.14 -1.00 16 3 C -0.09 -0.69 2.58 -89.50 -0.23 -0.93 16 4 H 0.08 0.61 7.67 -51.93 -0.40 0.21 16 5 C -0.12 -0.88 6.21 -25.07 -0.16 -1.03 16 6 C -0.12 -0.93 6.91 -24.74 -0.17 -1.10 16 7 C -0.12 -1.08 5.89 -25.07 -0.15 -1.23 16 8 C -0.10 -0.87 2.69 -89.50 -0.24 -1.11 16 9 H 0.08 0.75 7.67 -51.93 -0.40 0.35 16 10 C 0.13 1.44 5.31 -4.04 -0.02 1.42 16 11 N -1.13 -15.80 5.96 -10.61 -0.06 -15.86 16 12 S 2.78 54.13 6.09 -107.50 -0.65 53.48 16 13 O -0.96 -22.82 16.99 -57.17 -0.97 -23.80 16 14 O -0.99 -20.71 16.34 -57.17 -0.93 -21.64 16 15 N -0.99 -19.93 3.23 -123.06 -0.40 -20.33 16 16 C 0.09 1.54 10.69 59.84 0.64 2.18 16 17 C 0.23 5.39 4.16 -5.20 -0.02 5.37 16 18 C -0.53 -15.33 9.93 -34.44 -0.34 -15.68 16 19 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 20 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 21 N -0.89 -27.70 13.96 55.43 0.77 -26.92 16 22 Si 0.87 21.24 27.37 -169.99 -4.65 16.59 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -5.97 6.69 56.52 0.38 -5.59 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.34 6.55 -51.92 -0.34 0.00 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.44 6.27 -51.93 -0.33 0.12 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.69 7.76 -51.93 -0.40 0.29 16 37 H 0.07 0.87 7.80 -51.93 -0.40 0.46 16 38 H 0.06 0.68 7.92 -51.93 -0.41 0.27 16 39 H 0.41 5.01 8.31 -34.48 -0.29 4.73 16 40 H 0.04 0.51 8.05 -51.93 -0.42 0.09 16 41 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 42 H 0.07 1.09 7.05 -51.93 -0.37 0.73 16 43 H 0.03 0.70 7.51 -51.93 -0.39 0.31 16 44 H 0.03 0.72 6.66 -51.93 -0.35 0.38 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -34.65 364.34 -9.84 -44.49 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.87 Total: 0.21 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -0.56 Total: -11.71 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: 0.31 Total: -63.11 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -1.91 Total: -45.44 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.65 Total: 16.59 kcal Atomic # 16 Polarization: 54.13 SS G_CDS: -0.65 Total: 53.48 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.65 -9.84 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451752395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.206 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds