Wall clock time and date at job start Tue Mar 31 2020 09:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47093 * 2 1 4 4 H 1.08997 * 110.05930 * 303.17145 * 3 2 1 5 5 C 1.54273 * 110.03449 * 64.59346 * 3 2 1 6 6 C 1.54889 * 104.19651 * 142.89342 * 5 3 2 7 7 C 1.54882 * 102.74729 * 322.05508 * 6 5 3 8 8 C 1.53879 * 110.03181 * 181.75841 * 3 2 1 9 9 H 1.08995 * 110.03471 * 121.38446 * 8 3 2 10 10 C 1.53001 * 110.03231 * 359.97438 * 8 3 2 11 11 N 1.46491 * 109.47091 * 176.55471 * 10 8 3 12 12 S 1.65604 * 120.00186 * 162.90081 * 11 10 8 13 13 O 1.42098 * 106.40426 * 177.30272 * 12 11 10 14 14 O 1.42101 * 106.40101 * 310.21681 * 12 11 10 15 15 N 1.65595 * 107.21963 * 63.75623 * 12 11 10 16 16 C 1.46500 * 120.00262 * 274.24311 * 15 12 11 17 17 C 1.46500 * 119.99826 * 94.24287 * 15 12 11 18 18 C 1.50696 * 109.47250 * 95.27866 * 17 15 12 19 19 H 1.08001 * 120.00197 * 4.87450 * 18 17 15 20 20 C 1.37883 * 119.99920 * 184.86359 * 18 17 15 21 21 N 1.31507 * 120.00169 * 5.15179 * 20 18 17 22 22 Si 1.86804 * 119.99879 * 185.14417 * 20 18 17 23 23 H 1.48494 * 109.46773 * 94.99494 * 22 20 18 24 24 H 1.48498 * 109.46915 * 214.99606 * 22 20 18 25 25 H 1.48500 * 109.47188 * 334.99545 * 22 20 18 26 26 H 1.09003 * 109.47071 * 299.99975 * 1 2 3 27 27 H 1.09001 * 109.46660 * 60.00113 * 1 2 3 28 28 H 1.09001 * 109.47233 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47320 * 239.99573 * 2 1 3 30 30 H 1.09001 * 109.46660 * 119.99886 * 2 1 3 31 31 H 1.09001 * 110.48021 * 261.57444 * 5 3 2 32 32 H 1.08999 * 110.48335 * 24.21056 * 5 3 2 33 33 H 1.08994 * 110.75533 * 80.37093 * 6 5 3 34 34 H 1.09000 * 110.75334 * 203.74586 * 6 5 3 35 35 H 1.08996 * 110.49256 * 279.26706 * 7 6 5 36 36 H 1.09005 * 110.48669 * 156.62059 * 7 6 5 37 37 H 1.09006 * 109.47014 * 296.55016 * 10 8 3 38 38 H 1.08994 * 109.47161 * 56.55171 * 10 8 3 39 39 H 0.97001 * 120.00248 * 342.89235 * 11 10 8 40 40 H 1.09002 * 109.47029 * 90.00011 * 16 15 12 41 41 H 1.09000 * 109.47284 * 210.00107 * 16 15 12 42 42 H 1.09002 * 109.47000 * 329.99877 * 16 15 12 43 43 H 1.08997 * 109.47128 * 215.28148 * 17 15 12 44 44 H 1.09005 * 109.47047 * 335.27596 * 17 15 12 45 45 H 0.96995 * 120.00377 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6365 1.9816 -0.8570 5 6 1.6299 2.1480 1.3092 6 6 2.8414 3.0510 1.6497 7 6 4.0488 2.1720 1.2395 8 6 3.5781 1.4577 -0.0444 9 1 3.9209 2.0036 -0.9233 10 6 4.1158 0.0256 -0.0739 11 7 5.5751 0.0545 -0.1989 12 16 6.4641 -1.2948 0.1638 13 8 7.8189 -0.9698 -0.1156 14 8 6.0182 -1.7385 1.4380 15 7 6.0327 -2.4716 -0.9184 16 6 4.8701 -3.3220 -0.6512 17 6 6.8137 -2.6624 -2.1431 18 6 7.8334 -3.7502 -1.9242 19 1 7.8424 -4.3034 -0.9967 20 6 8.7549 -4.0395 -2.9083 21 7 8.8102 -3.3009 -3.9950 22 14 9.9250 -5.4804 -2.6978 23 1 9.3603 -6.6786 -3.3690 24 1 11.2376 -5.1449 -3.3057 25 1 10.1071 -5.7630 -1.2514 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.7359 2.7518 1.1532 32 1 1.4645 1.4171 2.1007 33 1 2.8154 3.9695 1.0634 34 1 2.8700 3.2730 2.7164 35 1 4.2741 1.4450 2.0197 36 1 4.9203 2.7933 1.0326 37 1 3.8403 -0.4851 0.8488 38 1 3.6887 -0.5053 -0.9246 39 1 6.0207 0.8639 -0.4943 40 1 3.9778 -2.8610 -1.0748 41 1 5.0238 -4.3009 -1.1053 42 1 4.7436 -3.4367 0.4253 43 1 6.1481 -2.9470 -2.9579 44 1 7.3230 -1.7329 -2.3978 45 1 9.4586 -3.5041 -4.6871 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451752396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:59 Heat of formation + Delta-G solvation = -102.058684 kcal Electronic energy + Delta-G solvation = -24391.565634 eV Core-core repulsion = 20955.775977 eV Total energy + Delta-G solvation = -3435.789657 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.49085 -36.53676 -35.46398 -35.09529 -34.67166 -33.27066 -32.41470 -29.48504 -27.75510 -27.69121 -25.06024 -24.28203 -23.01108 -22.25261 -20.82398 -19.15353 -18.65313 -17.24323 -16.65275 -16.34058 -16.21651 -15.65783 -15.09670 -14.76112 -14.61176 -14.34168 -14.19868 -13.51618 -13.32921 -13.24808 -12.69325 -12.49454 -12.33504 -12.23228 -12.11935 -11.60634 -11.52401 -11.46877 -11.35122 -11.15953 -11.12371 -11.04866 -11.02329 -10.78727 -10.67771 -10.64233 -10.57825 -10.48480 -10.32096 -10.01598 -9.74457 -9.16111 -8.42420 -8.03324 -6.04905 -4.08502 1.30307 3.32167 3.38957 3.44205 3.59278 4.17303 4.36722 4.43503 4.45888 4.47395 4.92455 5.03585 5.07266 5.12295 5.14960 5.29063 5.32820 5.35928 5.43386 5.46420 5.53480 5.58267 5.62725 5.68567 5.71500 5.84081 5.89907 5.91164 5.96990 5.98542 6.03823 6.15236 6.21245 6.24886 6.30699 6.36662 6.58215 7.14819 7.30768 7.45868 7.65859 7.93315 8.22851 8.93972 9.56391 11.03785 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.025372 B = 0.003743 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.332775 B = 7478.157255 C = 7886.679772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C -0.085 4.085 4 H 0.073 0.927 5 C -0.119 4.119 6 C -0.126 4.126 7 C -0.121 4.121 8 C -0.095 4.095 9 H 0.078 0.922 10 C 0.124 3.876 11 N -1.135 6.135 12 S 2.782 3.218 13 O -0.965 6.965 14 O -1.000 7.000 15 N -0.996 5.996 16 C 0.094 3.906 17 C 0.256 3.744 18 C -0.532 4.532 19 H 0.060 0.940 20 C 0.063 3.937 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.272 1.272 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.411 0.589 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.030 0.970 44 H 0.044 0.956 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.814 10.894 7.340 21.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.104 4.104 4 H 0.092 0.908 5 C -0.156 4.156 6 C -0.164 4.164 7 C -0.159 4.159 8 C -0.115 4.115 9 H 0.097 0.903 10 C -0.002 4.002 11 N -0.894 5.894 12 S 2.790 3.210 13 O -0.949 6.949 14 O -0.983 6.983 15 N -0.839 5.839 16 C -0.053 4.053 17 C 0.134 3.866 18 C -0.571 4.571 19 H 0.079 0.921 20 C -0.140 4.140 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.197 1.197 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.243 0.757 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.179 10.640 7.926 20.923 hybrid contribution 0.608 -0.405 -0.572 0.927 sum -15.571 10.235 7.355 20.032 Atomic orbital electron populations 1.21795 0.95997 1.01547 1.01585 1.21831 0.95817 0.96270 1.02774 1.21795 0.93994 0.96293 0.98306 0.90822 1.22457 0.97654 0.98379 0.97124 1.22497 0.94989 0.98090 1.00814 1.22461 0.97673 0.98632 0.97126 1.22017 0.94984 0.95430 0.99073 0.90309 1.21543 0.79482 0.97584 1.01606 1.56259 1.16289 1.30730 1.86110 1.01904 0.72964 0.72776 0.73376 1.93639 1.32350 1.83729 1.85189 1.93515 1.83281 1.81389 1.40108 1.57594 1.39910 1.47334 1.39019 1.21369 0.86730 0.96420 1.00774 1.19068 0.89544 0.98067 0.79920 1.21520 1.15034 1.18379 1.02208 0.92131 1.24938 0.96981 0.96771 0.95280 1.69925 1.36494 1.38281 1.08555 0.86501 0.80270 0.82327 0.78466 1.20647 1.21057 1.19706 0.92794 0.92960 0.92807 0.91198 0.91278 0.91925 0.91370 0.91697 0.91716 0.90991 0.91622 0.90499 0.91688 0.75653 0.94415 0.90455 0.91673 0.95201 0.93775 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.73 37.16 0.36 -0.77 16 2 C -0.13 -1.10 4.10 -26.73 -0.11 -1.21 16 3 C -0.08 -0.71 2.97 -89.50 -0.27 -0.98 16 4 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 5 C -0.12 -0.92 5.38 -25.07 -0.13 -1.06 16 6 C -0.13 -1.02 6.91 -24.74 -0.17 -1.20 16 7 C -0.12 -1.18 6.15 -25.07 -0.15 -1.34 16 8 C -0.10 -0.93 2.99 -89.50 -0.27 -1.20 16 9 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 10 C 0.12 1.50 4.36 -4.05 -0.02 1.48 16 11 N -1.13 -16.69 5.82 -10.62 -0.06 -16.75 16 12 S 2.78 55.61 6.10 -107.50 -0.66 54.96 16 13 O -0.97 -23.52 16.96 -57.17 -0.97 -24.49 16 14 O -1.00 -21.01 16.31 -57.17 -0.93 -21.94 16 15 N -1.00 -20.69 3.23 -123.05 -0.40 -21.09 16 16 C 0.09 1.59 10.70 59.85 0.64 2.23 16 17 C 0.26 6.47 5.11 -5.20 -0.03 6.44 16 18 C -0.53 -15.10 9.38 -34.44 -0.32 -15.42 16 19 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 20 C 0.06 1.80 5.45 -17.82 -0.10 1.70 16 21 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 22 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 26 H 0.05 0.37 7.38 -51.93 -0.38 -0.01 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.62 6.54 -51.93 -0.34 0.28 16 30 H 0.07 0.62 6.88 -51.93 -0.36 0.26 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.55 7.80 -51.93 -0.40 0.14 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.79 7.78 -51.93 -0.40 0.39 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.96 6.50 -51.93 -0.34 0.62 16 38 H 0.07 0.75 6.39 -51.93 -0.33 0.42 16 39 H 0.41 5.38 8.67 -34.47 -0.30 5.08 16 40 H 0.04 0.52 8.06 -51.93 -0.42 0.10 16 41 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 42 H 0.06 1.05 7.06 -51.93 -0.37 0.68 16 43 H 0.03 0.75 8.11 -51.93 -0.42 0.33 16 44 H 0.04 1.20 7.47 -51.93 -0.39 0.81 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -33.59 363.77 -10.18 -43.77 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.80 Total: 0.06 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -0.56 Total: -11.32 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: 0.28 Total: -63.46 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -1.90 Total: -46.43 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 55.61 SS G_CDS: -0.66 Total: 54.96 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.59 -10.18 -43.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451752396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.284 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds