Wall clock time and date at job start Tue Mar 31 2020 09:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47093 * 2 1 4 4 H 1.08997 * 110.05930 * 303.17145 * 3 2 1 5 5 C 1.54273 * 110.03449 * 64.59346 * 3 2 1 6 6 C 1.54889 * 104.19651 * 142.89342 * 5 3 2 7 7 C 1.54882 * 102.74729 * 322.05508 * 6 5 3 8 8 C 1.53879 * 110.03181 * 181.75841 * 3 2 1 9 9 H 1.08995 * 110.03471 * 121.38446 * 8 3 2 10 10 C 1.53001 * 110.03231 * 359.97438 * 8 3 2 11 11 N 1.46491 * 109.47091 * 176.55471 * 10 8 3 12 12 S 1.65604 * 120.00186 * 162.90081 * 11 10 8 13 13 O 1.42098 * 106.40426 * 177.30272 * 12 11 10 14 14 O 1.42101 * 106.40101 * 310.21681 * 12 11 10 15 15 N 1.65595 * 107.21963 * 63.75623 * 12 11 10 16 16 C 1.46500 * 120.00262 * 274.24311 * 15 12 11 17 17 C 1.46500 * 119.99826 * 94.24287 * 15 12 11 18 18 C 1.50696 * 109.47250 * 95.27866 * 17 15 12 19 19 H 1.08001 * 120.00197 * 4.87450 * 18 17 15 20 20 C 1.37883 * 119.99920 * 184.86359 * 18 17 15 21 21 N 1.31507 * 120.00169 * 5.15179 * 20 18 17 22 22 Si 1.86804 * 119.99879 * 185.14417 * 20 18 17 23 23 H 1.48494 * 109.46773 * 94.99494 * 22 20 18 24 24 H 1.48498 * 109.46915 * 214.99606 * 22 20 18 25 25 H 1.48500 * 109.47188 * 334.99545 * 22 20 18 26 26 H 1.09003 * 109.47071 * 299.99975 * 1 2 3 27 27 H 1.09001 * 109.46660 * 60.00113 * 1 2 3 28 28 H 1.09001 * 109.47233 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47320 * 239.99573 * 2 1 3 30 30 H 1.09001 * 109.46660 * 119.99886 * 2 1 3 31 31 H 1.09001 * 110.48021 * 261.57444 * 5 3 2 32 32 H 1.08999 * 110.48335 * 24.21056 * 5 3 2 33 33 H 1.08994 * 110.75533 * 80.37093 * 6 5 3 34 34 H 1.09000 * 110.75334 * 203.74586 * 6 5 3 35 35 H 1.08996 * 110.49256 * 279.26706 * 7 6 5 36 36 H 1.09005 * 110.48669 * 156.62059 * 7 6 5 37 37 H 1.09006 * 109.47014 * 296.55016 * 10 8 3 38 38 H 1.08994 * 109.47161 * 56.55171 * 10 8 3 39 39 H 0.97001 * 120.00248 * 342.89235 * 11 10 8 40 40 H 1.09002 * 109.47029 * 90.00011 * 16 15 12 41 41 H 1.09000 * 109.47284 * 210.00107 * 16 15 12 42 42 H 1.09002 * 109.47000 * 329.99877 * 16 15 12 43 43 H 1.08997 * 109.47128 * 215.28148 * 17 15 12 44 44 H 1.09005 * 109.47047 * 335.27596 * 17 15 12 45 45 H 0.96995 * 120.00377 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6365 1.9816 -0.8570 5 6 1.6299 2.1480 1.3092 6 6 2.8414 3.0510 1.6497 7 6 4.0488 2.1720 1.2395 8 6 3.5781 1.4577 -0.0444 9 1 3.9209 2.0036 -0.9233 10 6 4.1158 0.0256 -0.0739 11 7 5.5751 0.0545 -0.1989 12 16 6.4641 -1.2948 0.1638 13 8 7.8189 -0.9698 -0.1156 14 8 6.0182 -1.7385 1.4380 15 7 6.0327 -2.4716 -0.9184 16 6 4.8701 -3.3220 -0.6512 17 6 6.8137 -2.6624 -2.1431 18 6 7.8334 -3.7502 -1.9242 19 1 7.8424 -4.3034 -0.9967 20 6 8.7549 -4.0395 -2.9083 21 7 8.8102 -3.3009 -3.9950 22 14 9.9250 -5.4804 -2.6978 23 1 9.3603 -6.6786 -3.3690 24 1 11.2376 -5.1449 -3.3057 25 1 10.1071 -5.7630 -1.2514 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.7359 2.7518 1.1532 32 1 1.4645 1.4171 2.1007 33 1 2.8154 3.9695 1.0634 34 1 2.8700 3.2730 2.7164 35 1 4.2741 1.4450 2.0197 36 1 4.9203 2.7933 1.0326 37 1 3.8403 -0.4851 0.8488 38 1 3.6887 -0.5053 -0.9246 39 1 6.0207 0.8639 -0.4943 40 1 3.9778 -2.8610 -1.0748 41 1 5.0238 -4.3009 -1.1053 42 1 4.7436 -3.4367 0.4253 43 1 6.1481 -2.9470 -2.9579 44 1 7.3230 -1.7329 -2.3978 45 1 9.4586 -3.5041 -4.6871 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451752396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:57 Heat of formation + Delta-G solvation = -125.128351 kcal Electronic energy + Delta-G solvation = -24392.566010 eV Core-core repulsion = 20955.775977 eV Total energy + Delta-G solvation = -3436.790033 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.24771 -38.25365 -37.21029 -36.83471 -35.77775 -34.50604 -33.92293 -30.37569 -29.66232 -28.34800 -26.78866 -25.22726 -24.20432 -23.65831 -21.51593 -20.43413 -19.71678 -18.92603 -18.44324 -18.07965 -17.33681 -16.88775 -16.54251 -16.02043 -15.56632 -15.34731 -15.25197 -14.99224 -14.91530 -14.11587 -14.06411 -13.88530 -13.65587 -13.34963 -13.24915 -13.15894 -13.08817 -13.02090 -12.92421 -12.59095 -12.47543 -12.35640 -12.11296 -11.98950 -11.85148 -11.81222 -11.74837 -11.49486 -11.39482 -11.24427 -11.06918 -10.59605 -10.32067 -9.77060 -8.20820 -6.32663 -0.28958 1.38939 1.40911 1.51892 2.08115 2.40513 2.67019 3.09740 3.46331 3.63873 3.69525 3.76455 4.09848 4.21090 4.37564 4.39246 4.44737 4.49413 4.56247 4.59554 4.72822 4.76570 4.82040 4.83710 4.90488 4.93021 5.03143 5.08618 5.11376 5.15952 5.20386 5.25837 5.31732 5.34652 5.39627 5.46048 5.53956 5.54838 5.64558 5.70006 5.88681 6.09671 6.19274 6.75934 7.36162 8.86941 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.025372 B = 0.003743 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.332775 B = 7478.157255 C = 7886.679772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.081 4.081 4 H 0.083 0.917 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.127 4.127 8 C -0.092 4.092 9 H 0.085 0.915 10 C 0.117 3.883 11 N -1.119 6.119 12 S 2.798 3.202 13 O -1.014 7.014 14 O -1.011 7.011 15 N -1.002 6.002 16 C 0.086 3.914 17 C 0.271 3.729 18 C -0.554 4.554 19 H 0.053 0.947 20 C 0.012 3.988 21 N -0.923 5.923 22 Si 0.958 3.042 23 H -0.264 1.264 24 H -0.280 1.280 25 H -0.273 1.273 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.420 0.580 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.019 0.981 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.344 11.136 7.488 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C -0.100 4.100 4 H 0.102 0.898 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.165 4.165 8 C -0.112 4.112 9 H 0.103 0.897 10 C -0.008 4.008 11 N -0.882 5.882 12 S 2.806 3.194 13 O -0.998 6.998 14 O -0.995 6.995 15 N -0.844 5.844 16 C -0.059 4.059 17 C 0.147 3.853 18 C -0.594 4.594 19 H 0.071 0.929 20 C -0.188 4.188 21 N -0.563 5.563 22 Si 0.783 3.217 23 H -0.189 1.189 24 H -0.205 1.205 25 H -0.198 1.198 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.255 0.745 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.046 0.954 44 H 0.037 0.963 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.731 10.873 8.088 22.316 hybrid contribution 1.003 -0.422 -0.576 1.231 sum -16.728 10.450 7.512 21.107 Atomic orbital electron populations 1.21771 0.95073 1.01757 1.02082 1.21844 0.96686 0.96205 1.02241 1.21790 0.92608 0.96482 0.99104 0.89836 1.22452 0.98004 0.98328 0.96584 1.22490 0.94159 0.98134 1.01246 1.22492 0.98629 0.98663 0.96676 1.22028 0.96102 0.93699 0.99358 0.89690 1.21839 0.77416 0.99597 1.01993 1.55801 1.17427 1.29234 1.85768 1.01175 0.72094 0.73165 0.72980 1.93567 1.35952 1.84571 1.85755 1.93494 1.83250 1.82065 1.40652 1.57458 1.40706 1.48800 1.37460 1.21619 0.86617 0.96040 1.01637 1.18630 0.89260 0.95936 0.81490 1.21875 1.16169 1.19287 1.02024 0.92916 1.25775 0.98667 0.99313 0.95031 1.70017 1.37345 1.39658 1.09250 0.85546 0.78271 0.79549 0.78358 1.18912 1.20522 1.19788 0.92277 0.92471 0.92799 0.91524 0.92006 0.90560 0.91704 0.90798 0.91331 0.92576 0.91588 0.90703 0.90644 0.74498 0.90729 0.91050 0.90799 0.95370 0.96283 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.73 71.98 0.70 -1.20 16 2 C -0.13 -1.99 4.10 30.59 0.13 -1.86 16 3 C -0.08 -1.17 2.97 -10.07 -0.03 -1.20 16 4 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 5 C -0.12 -1.53 5.38 31.67 0.17 -1.36 16 6 C -0.12 -1.74 6.91 31.88 0.22 -1.52 16 7 C -0.13 -2.31 6.15 31.67 0.19 -2.12 16 8 C -0.09 -1.64 2.99 -10.07 -0.03 -1.67 16 9 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 10 C 0.12 2.66 4.36 86.38 0.38 3.04 16 11 N -1.12 -32.30 5.82 -187.51 -1.09 -33.39 16 12 S 2.80 112.43 6.10 -56.49 -0.34 112.09 16 13 O -1.01 -50.72 16.96 -128.00 -2.17 -52.89 16 14 O -1.01 -42.28 16.31 -128.00 -2.09 -44.37 16 15 N -1.00 -41.60 3.23 -543.23 -1.75 -43.35 16 16 C 0.09 2.82 10.70 127.77 1.37 4.19 16 17 C 0.27 13.88 5.11 85.63 0.44 14.32 16 18 C -0.55 -31.85 9.38 25.60 0.24 -31.61 16 19 H 0.05 3.03 7.82 -2.91 -0.02 3.01 16 20 C 0.01 0.68 5.45 84.66 0.46 1.14 16 21 N -0.92 -54.87 13.29 21.45 0.28 -54.59 16 22 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 26 H 0.06 0.69 7.38 -2.39 -0.02 0.67 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 1.03 6.54 -2.39 -0.02 1.02 16 30 H 0.06 1.01 6.88 -2.39 -0.02 1.00 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.91 7.80 -2.39 -0.02 0.89 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.20 7.78 -2.39 -0.02 1.18 16 36 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.07 1.77 6.50 -2.38 -0.02 1.75 16 38 H 0.08 1.59 6.39 -2.39 -0.02 1.57 16 39 H 0.42 10.81 8.67 -96.74 -0.84 9.97 16 40 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 41 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 42 H 0.07 2.28 7.06 -2.39 -0.02 2.26 16 43 H 0.03 1.44 8.11 -2.39 -0.02 1.42 16 44 H 0.02 1.07 7.47 -2.38 -0.02 1.05 16 45 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -71.92 363.77 -0.78 -72.70 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.12 Total: 16.65 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 4.23 Total: -19.85 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -2.56 Total: -131.33 kcal Atomic # 8 Polarization: -93.01 SS G_CDS: -4.26 Total: -97.26 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: 112.43 SS G_CDS: -0.34 Total: 112.09 kcal Total: -71.92 -0.78 -72.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451752396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.431 kcal (2) G-P(sol) polarization free energy of solvation -71.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds