Wall clock time and date at job start Tue Mar 31 2020 08:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47140 * 2 1 4 4 C 1.53004 * 109.47318 * 120.00163 * 2 1 3 5 5 C 1.52997 * 109.46784 * 64.99727 * 4 2 1 6 6 N 1.46500 * 109.46676 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99866 * 179.97438 * 6 5 4 8 8 O 1.21362 * 120.00110 * 0.02562 * 7 6 5 9 9 C 1.49361 * 120.00027 * 179.97438 * 7 6 5 10 10 O 1.21371 * 119.99766 * 0.02562 * 9 7 6 11 11 N 1.34772 * 119.99719 * 180.02562 * 9 7 6 12 12 C 1.39742 * 119.99729 * 184.88429 * 11 9 7 13 13 C 1.39344 * 119.95434 * 33.37788 * 12 11 9 14 14 C 1.38472 * 120.42515 * 180.02562 * 13 12 11 15 15 C 1.37693 * 120.32668 * 0.27575 * 14 13 12 16 16 C 1.40749 * 119.89612 * 359.49883 * 15 14 13 17 17 C 1.41411 * 120.20664 * 180.24756 * 16 15 14 18 18 H 1.07991 * 120.00375 * 331.61101 * 17 16 15 19 19 C 1.39938 * 119.99712 * 151.60580 * 17 16 15 20 20 N 1.30829 * 119.99948 * 166.74340 * 19 17 16 21 21 Si 1.86795 * 120.00132 * 346.74928 * 19 17 16 22 22 H 1.48498 * 109.47662 * 95.30067 * 21 19 17 23 23 H 1.48506 * 109.46969 * 215.30362 * 21 19 17 24 24 H 1.48501 * 109.47046 * 335.29952 * 21 19 17 25 25 C 1.38304 * 119.95321 * 213.40243 * 12 11 9 26 26 H 1.08998 * 109.47321 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47044 * 299.99860 * 1 2 3 28 28 H 1.09001 * 109.47298 * 59.99380 * 1 2 3 29 29 H 1.08998 * 109.46728 * 240.00076 * 2 1 3 30 30 H 1.09006 * 109.47576 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47582 * 299.99924 * 3 2 1 32 32 H 1.08998 * 109.47248 * 60.00395 * 3 2 1 33 33 H 1.08997 * 109.46839 * 304.99942 * 4 2 1 34 34 H 1.08993 * 109.46780 * 184.99956 * 4 2 1 35 35 H 1.08997 * 109.47257 * 60.00471 * 5 4 2 36 36 H 1.08996 * 109.47267 * 300.00057 * 5 4 2 37 37 H 0.96997 * 120.00433 * 359.97438 * 6 5 4 38 38 H 0.97000 * 120.00551 * 4.87886 * 11 9 7 39 39 H 1.08000 * 119.78719 * 0.02562 * 13 12 11 40 40 H 1.08004 * 119.83513 * 179.97438 * 14 13 12 41 41 H 1.08004 * 120.05237 * 179.73951 * 15 14 13 42 42 H 0.97000 * 120.00369 * 180.02562 * 20 19 17 43 43 H 1.08002 * 120.16288 * 359.95267 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 7 2.1242 -2.8862 2.3837 7 6 1.8833 -4.2022 2.5476 8 8 1.2619 -4.8150 1.7044 9 6 2.3823 -4.9065 3.7665 10 8 3.0042 -4.2938 4.6097 11 7 2.1419 -6.2225 3.9301 12 6 2.5185 -6.8595 5.1155 13 6 2.4778 -6.1641 6.3223 14 6 2.8493 -6.7855 7.5027 15 6 3.2689 -8.0970 7.4957 16 6 3.3108 -8.8137 6.2852 17 6 3.7357 -10.1624 6.2712 18 1 4.4330 -10.5167 7.0159 19 6 3.2525 -11.0381 5.2925 20 7 3.8273 -12.1995 5.1125 21 14 1.7868 -10.5488 4.2429 22 1 2.2662 -9.9611 2.9662 23 1 0.9607 -11.7491 3.9559 24 1 0.9681 -9.5473 4.9722 25 6 2.9318 -8.1791 5.0892 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6055 -0.2618 2.1369 34 1 3.1263 -0.6443 1.2951 35 1 2.0698 -2.6550 0.3002 36 1 0.5490 -2.2723 1.1420 37 1 2.6212 -2.3966 3.0576 38 1 1.7074 -6.7276 3.2251 39 1 2.1543 -5.1338 6.3372 40 1 2.8145 -6.2374 8.4326 41 1 3.5617 -8.5760 8.4184 42 1 3.4926 -12.8064 4.4339 43 1 2.9635 -8.7193 4.1545 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453564087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:16 Heat of formation + Delta-G solvation = -66.659580 kcal Electronic energy + Delta-G solvation = -23852.963891 eV Core-core repulsion = 20283.265303 eV Total energy + Delta-G solvation = -3569.698588 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.72949 -39.03000 -37.52192 -37.30877 -35.04190 -34.18054 -33.35249 -30.44180 -29.79234 -28.92276 -27.58865 -25.30817 -25.17548 -23.03761 -21.75825 -21.13351 -20.46142 -19.67179 -18.53708 -17.59588 -16.69577 -16.32573 -16.19632 -15.60736 -15.42735 -15.24249 -14.60737 -14.56565 -14.27426 -13.99951 -13.78365 -13.36836 -13.12273 -13.00769 -12.63015 -12.57454 -12.19573 -12.11037 -11.93817 -11.91421 -11.56833 -11.27294 -11.12632 -11.06436 -10.89154 -10.81708 -10.49594 -10.21122 -9.81646 -9.73322 -9.41620 -9.33247 -9.06242 -7.68528 -7.29431 -6.96473 -4.54210 1.37649 2.34783 2.55760 2.61445 3.05357 3.16627 3.26816 3.39426 3.73176 3.93644 4.31294 4.40124 4.45041 4.49215 4.59833 4.82656 4.96577 5.19244 5.21568 5.24857 5.35787 5.40730 5.47228 5.57476 5.59982 5.73852 5.90133 5.92759 5.93759 6.04578 6.20149 6.35129 6.44710 6.57235 6.65877 6.96310 7.03882 7.28244 7.31322 7.60110 7.64343 7.76193 7.88911 8.01995 8.19432 8.33275 8.58962 8.75294 10.05976 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.002784 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.994613 B =10056.637919 C =10811.024226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.129 4.129 5 C 0.115 3.885 6 N -0.703 5.703 7 C 0.510 3.490 8 O -0.521 6.521 9 C 0.501 3.499 10 O -0.502 6.502 11 N -0.636 5.636 12 C 0.165 3.835 13 C -0.231 4.231 14 C -0.073 4.073 15 C -0.210 4.210 16 C 0.104 3.896 17 C -0.442 4.442 18 H 0.093 0.907 19 C 0.081 3.919 20 N -0.810 5.810 21 Si 0.911 3.089 22 H -0.272 1.272 23 H -0.292 1.292 24 H -0.240 1.240 25 C -0.253 4.253 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.413 0.587 38 H 0.413 0.587 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.286 0.714 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.528 20.721 -9.529 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.167 4.167 5 C -0.008 4.008 6 N -0.357 5.357 7 C 0.290 3.710 8 O -0.396 6.396 9 C 0.282 3.718 10 O -0.377 6.377 11 N -0.281 5.281 12 C 0.074 3.926 13 C -0.252 4.252 14 C -0.092 4.092 15 C -0.230 4.230 16 C 0.100 3.900 17 C -0.471 4.471 18 H 0.111 0.889 19 C -0.138 4.138 20 N -0.435 5.435 21 Si 0.738 3.262 22 H -0.198 1.198 23 H -0.220 1.220 24 H -0.163 1.163 25 C -0.274 4.274 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.250 0.750 38 H 0.250 0.750 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.498 20.469 -9.660 23.292 hybrid contribution -0.499 -0.036 -0.679 0.843 sum -5.997 20.433 -10.338 23.672 Atomic orbital electron populations 1.21945 0.94974 1.02204 1.01956 1.21034 0.96144 0.96319 0.97717 1.21836 1.01071 0.95629 1.01950 1.21896 1.01927 0.93650 0.99248 1.21577 1.00138 0.91797 0.87308 1.45753 1.56743 1.08902 1.24333 1.20240 0.80628 0.83068 0.87025 1.90762 1.39269 1.66011 1.43566 1.19989 0.81403 0.83427 0.87025 1.90772 1.37906 1.65716 1.43311 1.43224 1.57633 1.08516 1.18741 1.17455 0.99139 0.92216 0.83818 1.20323 1.13918 0.99970 0.90943 1.20535 0.97976 0.94564 0.96091 1.21075 1.09854 0.95007 0.97022 1.17507 0.88862 0.93477 0.90116 1.19496 1.23373 0.92483 1.11736 0.88898 1.26179 0.97613 0.94400 0.95561 1.69655 1.36588 1.08372 1.28839 0.86338 0.81689 0.78220 0.79953 1.19840 1.21956 1.16325 1.20709 1.14569 0.93908 0.98243 0.92209 0.92518 0.92565 0.90781 0.92556 0.92526 0.92552 0.90867 0.90863 0.90977 0.90697 0.75030 0.75021 0.87383 0.88162 0.87843 0.90404 0.87948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.95 37.16 0.33 -0.55 16 2 C -0.09 -0.53 2.92 -90.62 -0.26 -0.79 16 3 C -0.15 -0.75 9.19 37.15 0.34 -0.41 16 4 C -0.13 -0.81 4.80 -26.73 -0.13 -0.94 16 5 C 0.11 1.01 5.43 -4.04 -0.02 0.99 16 6 N -0.70 -7.81 5.55 -60.76 -0.34 -8.15 16 7 C 0.51 7.54 7.89 -11.63 -0.09 7.45 16 8 O -0.52 -8.65 16.48 5.49 0.09 -8.56 16 9 C 0.50 8.73 7.62 -11.63 -0.09 8.64 16 10 O -0.50 -9.52 14.13 5.48 0.08 -9.45 16 11 N -0.64 -12.11 5.32 -10.34 -0.06 -12.16 16 12 C 0.17 3.67 6.27 -83.82 -0.53 3.15 16 13 C -0.23 -5.03 8.66 -39.08 -0.34 -5.37 16 14 C -0.07 -1.55 10.01 -39.69 -0.40 -1.95 16 15 C -0.21 -4.85 9.79 -38.83 -0.38 -5.23 16 16 C 0.10 2.62 5.19 -106.85 -0.55 2.07 16 17 C -0.44 -11.85 9.61 -37.74 -0.36 -12.21 16 18 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 19 C 0.08 2.11 5.47 -17.34 -0.09 2.02 16 20 N -0.81 -21.53 13.93 55.55 0.77 -20.75 16 21 Si 0.91 20.60 24.37 -169.99 -4.14 16.46 16 22 H -0.27 -5.94 6.77 56.52 0.38 -5.56 16 23 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.24 -5.49 6.48 56.52 0.37 -5.12 16 25 C -0.25 -6.08 6.83 -38.67 -0.26 -6.35 16 26 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.68 6.56 -51.93 -0.34 0.34 16 37 H 0.41 4.08 7.94 -40.82 -0.32 3.76 16 38 H 0.41 7.23 8.29 -40.82 -0.34 6.89 16 39 H 0.11 2.26 6.39 -52.49 -0.34 1.93 16 40 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 41 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 42 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 43 H 0.10 2.44 4.20 -52.49 -0.22 2.22 16 LS Contribution 354.45 15.07 5.34 5.34 Total: -1.00 -29.50 354.45 -7.25 -36.75 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.16 Total: 10.01 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -2.84 Total: -9.49 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.38 Total: -41.06 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -18.01 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.14 Total: 16.46 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.50 -7.25 -36.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453564087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.909 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds