Wall clock time and date at job start Tue Mar 31 2020 08:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47140 * 2 1 4 4 C 1.53004 * 109.47318 * 120.00163 * 2 1 3 5 5 C 1.52997 * 109.46784 * 64.99727 * 4 2 1 6 6 N 1.46500 * 109.46676 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99866 * 179.97438 * 6 5 4 8 8 O 1.21362 * 120.00110 * 0.02562 * 7 6 5 9 9 C 1.49361 * 120.00027 * 179.97438 * 7 6 5 10 10 O 1.21371 * 119.99766 * 0.02562 * 9 7 6 11 11 N 1.34772 * 119.99719 * 180.02562 * 9 7 6 12 12 C 1.39742 * 119.99729 * 184.88429 * 11 9 7 13 13 C 1.39344 * 119.95434 * 33.37788 * 12 11 9 14 14 C 1.38472 * 120.42515 * 180.02562 * 13 12 11 15 15 C 1.37693 * 120.32668 * 0.27575 * 14 13 12 16 16 C 1.40749 * 119.89612 * 359.49883 * 15 14 13 17 17 C 1.41411 * 120.20664 * 180.24756 * 16 15 14 18 18 H 1.07991 * 120.00375 * 331.61101 * 17 16 15 19 19 C 1.39938 * 119.99712 * 151.60580 * 17 16 15 20 20 N 1.30829 * 119.99948 * 166.74340 * 19 17 16 21 21 Si 1.86795 * 120.00132 * 346.74928 * 19 17 16 22 22 H 1.48498 * 109.47662 * 95.30067 * 21 19 17 23 23 H 1.48506 * 109.46969 * 215.30362 * 21 19 17 24 24 H 1.48501 * 109.47046 * 335.29952 * 21 19 17 25 25 C 1.38304 * 119.95321 * 213.40243 * 12 11 9 26 26 H 1.08998 * 109.47321 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47044 * 299.99860 * 1 2 3 28 28 H 1.09001 * 109.47298 * 59.99380 * 1 2 3 29 29 H 1.08998 * 109.46728 * 240.00076 * 2 1 3 30 30 H 1.09006 * 109.47576 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47582 * 299.99924 * 3 2 1 32 32 H 1.08998 * 109.47248 * 60.00395 * 3 2 1 33 33 H 1.08997 * 109.46839 * 304.99942 * 4 2 1 34 34 H 1.08993 * 109.46780 * 184.99956 * 4 2 1 35 35 H 1.08997 * 109.47257 * 60.00471 * 5 4 2 36 36 H 1.08996 * 109.47267 * 300.00057 * 5 4 2 37 37 H 0.96997 * 120.00433 * 359.97438 * 6 5 4 38 38 H 0.97000 * 120.00551 * 4.87886 * 11 9 7 39 39 H 1.08000 * 119.78719 * 0.02562 * 13 12 11 40 40 H 1.08004 * 119.83513 * 179.97438 * 14 13 12 41 41 H 1.08004 * 120.05237 * 179.73951 * 15 14 13 42 42 H 0.97000 * 120.00369 * 180.02562 * 20 19 17 43 43 H 1.08002 * 120.16288 * 359.95267 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 7 2.1242 -2.8862 2.3837 7 6 1.8833 -4.2022 2.5476 8 8 1.2619 -4.8150 1.7044 9 6 2.3823 -4.9065 3.7665 10 8 3.0042 -4.2938 4.6097 11 7 2.1419 -6.2225 3.9301 12 6 2.5185 -6.8595 5.1155 13 6 2.4778 -6.1641 6.3223 14 6 2.8493 -6.7855 7.5027 15 6 3.2689 -8.0970 7.4957 16 6 3.3108 -8.8137 6.2852 17 6 3.7357 -10.1624 6.2712 18 1 4.4330 -10.5167 7.0159 19 6 3.2525 -11.0381 5.2925 20 7 3.8273 -12.1995 5.1125 21 14 1.7868 -10.5488 4.2429 22 1 2.2662 -9.9611 2.9662 23 1 0.9607 -11.7491 3.9559 24 1 0.9681 -9.5473 4.9722 25 6 2.9318 -8.1791 5.0892 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6055 -0.2618 2.1369 34 1 3.1263 -0.6443 1.2951 35 1 2.0698 -2.6550 0.3002 36 1 0.5490 -2.2723 1.1420 37 1 2.6212 -2.3966 3.0576 38 1 1.7074 -6.7276 3.2251 39 1 2.1543 -5.1338 6.3372 40 1 2.8145 -6.2374 8.4326 41 1 3.5617 -8.5760 8.4184 42 1 3.4926 -12.8064 4.4339 43 1 2.9635 -8.7193 4.1545 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453564087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:15 Heat of formation + Delta-G solvation = -85.970219 kcal Electronic energy + Delta-G solvation = -23853.801263 eV Core-core repulsion = 20283.265303 eV Total energy + Delta-G solvation = -3570.535961 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.07419 -40.38442 -39.08580 -38.05347 -36.40211 -35.46286 -35.06081 -32.30472 -30.85218 -30.28666 -28.00650 -27.14150 -26.39135 -23.96613 -23.54142 -22.40527 -21.46852 -20.86018 -19.77090 -19.40335 -18.11341 -17.82306 -17.24092 -16.91532 -16.68685 -16.44048 -16.26877 -15.70793 -15.28568 -15.16507 -14.82510 -14.70530 -14.55770 -14.31086 -13.93438 -13.73534 -13.64008 -13.06091 -12.99681 -12.72821 -12.71699 -12.64474 -12.47376 -12.22352 -12.01403 -11.77826 -11.61181 -11.60582 -11.51183 -11.46516 -10.97305 -10.67581 -10.35791 -9.54272 -9.03219 -8.90577 -6.54818 0.02075 0.76892 0.80532 1.20080 1.23737 1.38529 1.46787 2.02598 2.09189 2.52295 2.60141 3.28303 3.46134 3.75845 3.92325 4.02966 4.19794 4.27927 4.44016 4.46727 4.58247 4.64616 4.70696 4.77113 4.82592 4.86031 4.89145 4.93140 4.94836 5.05975 5.13054 5.17358 5.24362 5.32852 5.46152 5.46823 5.50830 5.56270 5.79603 5.84922 5.91690 6.18663 6.24382 6.37351 6.58527 6.70367 6.78404 6.83181 8.17181 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.002784 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.994613 B =10056.637919 C =10811.024226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.113 3.887 6 N -0.684 5.684 7 C 0.516 3.484 8 O -0.541 6.541 9 C 0.503 3.497 10 O -0.516 6.516 11 N -0.640 5.640 12 C 0.165 3.835 13 C -0.225 4.225 14 C -0.066 4.066 15 C -0.221 4.221 16 C 0.086 3.914 17 C -0.475 4.475 18 H 0.062 0.938 19 C 0.044 3.956 20 N -0.850 5.850 21 Si 0.961 3.039 22 H -0.260 1.260 23 H -0.280 1.280 24 H -0.244 1.244 25 C -0.265 4.265 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.421 0.579 38 H 0.421 0.579 39 H 0.122 0.878 40 H 0.138 0.862 41 H 0.111 0.889 42 H 0.294 0.706 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.652 23.752 -10.384 26.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.159 4.159 5 C -0.010 4.010 6 N -0.337 5.337 7 C 0.296 3.704 8 O -0.418 6.418 9 C 0.286 3.714 10 O -0.392 6.392 11 N -0.286 5.286 12 C 0.072 3.928 13 C -0.246 4.246 14 C -0.084 4.084 15 C -0.241 4.241 16 C 0.083 3.917 17 C -0.505 4.505 18 H 0.080 0.920 19 C -0.170 4.170 20 N -0.476 5.476 21 Si 0.786 3.214 22 H -0.185 1.185 23 H -0.207 1.207 24 H -0.168 1.168 25 C -0.286 4.286 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.259 0.741 38 H 0.258 0.742 39 H 0.140 0.860 40 H 0.156 0.844 41 H 0.129 0.871 42 H 0.104 0.896 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.611 23.548 -10.524 26.627 hybrid contribution -0.126 -0.734 -0.356 0.825 sum -6.737 22.815 -10.881 26.159 Atomic orbital electron populations 1.21951 0.95069 1.01843 1.02281 1.21027 0.96039 0.96673 0.97338 1.21822 1.01203 0.95101 1.02237 1.21864 1.02412 0.91767 0.99893 1.21781 1.00117 0.93023 0.86034 1.45778 1.55354 1.07562 1.24981 1.19717 0.80845 0.84011 0.85832 1.90767 1.40555 1.66648 1.43850 1.20455 0.80545 0.82749 0.87678 1.90756 1.38364 1.65887 1.44151 1.43214 1.57968 1.09288 1.18093 1.17524 0.98194 0.91752 0.85285 1.20660 1.12497 1.00513 0.90913 1.20912 0.96098 0.93814 0.97613 1.21283 1.10125 0.95960 0.96747 1.17670 0.89378 0.93089 0.91538 1.19481 1.24729 0.93958 1.12342 0.91977 1.26837 0.99523 0.94222 0.96418 1.69686 1.38178 1.09437 1.30291 0.85557 0.78856 0.78174 0.78861 1.18541 1.20741 1.16799 1.20748 1.15153 0.94890 0.97790 0.92878 0.92375 0.92137 0.90796 0.92347 0.92179 0.92383 0.90203 0.90176 0.91114 0.90691 0.74090 0.74195 0.85974 0.84417 0.87089 0.89580 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.95 71.98 0.64 -0.83 16 2 C -0.09 -0.83 2.92 -10.79 -0.03 -0.86 16 3 C -0.15 -1.15 9.19 71.98 0.66 -0.48 16 4 C -0.12 -1.20 4.80 30.59 0.15 -1.05 16 5 C 0.11 1.70 5.43 86.38 0.47 2.17 16 6 N -0.68 -13.40 5.55 -464.51 -2.58 -15.97 16 7 C 0.52 14.11 7.89 87.24 0.69 14.80 16 8 O -0.54 -16.92 16.48 -3.28 -0.05 -16.97 16 9 C 0.50 16.44 7.62 87.24 0.67 17.10 16 10 O -0.52 -18.25 14.13 -3.31 -0.05 -18.29 16 11 N -0.64 -23.15 5.32 -304.98 -1.62 -24.77 16 12 C 0.17 7.06 6.27 38.16 0.24 7.30 16 13 C -0.23 -9.22 8.66 22.59 0.20 -9.02 16 14 C -0.07 -2.63 10.01 22.20 0.22 -2.41 16 15 C -0.22 -10.08 9.79 22.75 0.22 -9.86 16 16 C 0.09 4.40 5.19 -21.31 -0.11 4.29 16 17 C -0.48 -26.52 9.61 23.46 0.23 -26.29 16 18 H 0.06 3.70 8.06 -2.92 -0.02 3.68 16 19 C 0.04 2.38 5.47 85.25 0.47 2.85 16 20 N -0.85 -46.64 13.93 21.82 0.30 -46.33 16 21 Si 0.96 42.58 24.37 68.60 1.67 44.25 16 22 H -0.26 -10.87 6.77 99.48 0.67 -10.20 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.24 -10.88 6.48 99.48 0.64 -10.24 16 25 C -0.26 -12.57 6.83 22.86 0.16 -12.42 16 26 H 0.05 0.58 6.56 -2.39 -0.02 0.56 16 27 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.19 6.56 -2.39 -0.02 1.18 16 37 H 0.42 7.08 7.94 -92.71 -0.74 6.34 16 38 H 0.42 14.00 8.29 -92.71 -0.77 13.23 16 39 H 0.12 4.69 6.39 -2.91 -0.02 4.67 16 40 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 41 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 42 H 0.29 14.52 8.30 -92.71 -0.77 13.75 16 43 H 0.10 4.76 4.20 -2.91 -0.01 4.75 16 Total: -1.00 -63.47 354.45 1.98 -61.49 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: -0.56 Total: 31.33 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 4.86 Total: -14.73 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -3.90 Total: -87.08 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.10 Total: -35.26 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.67 Total: 44.25 kcal Total: -63.47 1.98 -61.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453564087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.479 kcal (2) G-P(sol) polarization free energy of solvation -63.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds