Wall clock time and date at job start Tue Mar 31 2020 08:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47323 * 2 1 4 4 C 1.52997 * 109.47387 * 175.00018 * 3 2 1 5 5 C 1.52998 * 109.47348 * 184.99832 * 4 3 2 6 6 N 1.46500 * 109.46878 * 294.99762 * 3 2 1 7 7 C 1.34780 * 119.99866 * 154.99798 * 6 3 2 8 8 O 1.21362 * 120.00078 * 0.02562 * 7 6 3 9 9 C 1.49361 * 120.00027 * 179.97438 * 7 6 3 10 10 O 1.21371 * 119.99766 * 0.02562 * 9 7 6 11 11 N 1.34772 * 119.99719 * 180.02562 * 9 7 6 12 12 C 1.39742 * 119.99729 * 184.88429 * 11 9 7 13 13 C 1.39344 * 119.95434 * 33.37788 * 12 11 9 14 14 C 1.38472 * 120.42515 * 180.02562 * 13 12 11 15 15 C 1.37693 * 120.32668 * 0.27575 * 14 13 12 16 16 C 1.40749 * 119.89612 * 359.49883 * 15 14 13 17 17 C 1.41411 * 120.20664 * 180.24756 * 16 15 14 18 18 H 1.07991 * 120.00375 * 331.61101 * 17 16 15 19 19 C 1.39938 * 119.99712 * 151.60580 * 17 16 15 20 20 N 1.30829 * 119.99948 * 166.74340 * 19 17 16 21 21 Si 1.86795 * 120.00132 * 346.74928 * 19 17 16 22 22 H 1.48498 * 109.47662 * 95.30067 * 21 19 17 23 23 H 1.48506 * 109.46969 * 215.30362 * 21 19 17 24 24 H 1.48501 * 109.47046 * 335.29952 * 21 19 17 25 25 C 1.38304 * 119.95321 * 213.40243 * 12 11 9 26 26 H 1.08999 * 109.46984 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47256 * 300.00349 * 1 2 3 28 28 H 1.09007 * 109.46934 * 59.99910 * 1 2 3 29 29 H 1.08998 * 109.47256 * 239.99650 * 2 1 3 30 30 H 1.08997 * 109.47017 * 119.99940 * 2 1 3 31 31 H 1.09000 * 109.47319 * 54.99595 * 3 2 1 32 32 H 1.09003 * 109.46973 * 304.99550 * 4 3 2 33 33 H 1.08998 * 109.47524 * 64.99466 * 4 3 2 34 34 H 1.09002 * 109.47431 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47319 * 300.00015 * 5 4 3 36 36 H 1.09008 * 109.47030 * 59.99922 * 5 4 3 37 37 H 0.96997 * 120.00433 * 334.99910 * 6 3 2 38 38 H 0.97000 * 120.00551 * 4.87886 * 11 9 7 39 39 H 1.08000 * 119.78719 * 0.02562 * 13 12 11 40 40 H 1.08004 * 119.83513 * 179.97438 * 14 13 12 41 41 H 1.08004 * 120.05237 * 179.73951 * 15 14 13 42 42 H 0.97000 * 120.00369 * 180.02562 * 20 19 17 43 43 H 1.08002 * 120.16288 * 359.95267 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4443 0.1257 5 6 4.0646 2.8849 0.2511 6 7 1.6525 2.0974 -1.2519 7 6 1.5257 3.4384 -1.2997 8 8 1.7330 4.1033 -0.3058 9 6 1.1312 4.1061 -2.5761 10 8 0.9244 3.4412 -3.5701 11 7 1.0049 5.4471 -2.6239 12 6 0.5376 6.0637 -3.7876 13 6 -0.4041 5.4186 -4.5869 14 6 -0.8734 6.0204 -5.7423 15 6 -0.4100 7.2616 -6.1173 16 6 0.5376 7.9276 -5.3176 17 6 1.0141 9.2048 -5.6937 18 1 1.0453 9.4840 -6.7364 19 6 1.4451 10.1070 -4.7146 20 7 2.1205 11.1731 -5.0594 21 14 1.0561 9.7891 -2.9155 22 1 2.2058 9.1018 -2.2743 23 1 0.8054 11.0810 -2.2275 24 1 -0.1522 8.9317 -2.8143 25 6 1.0107 7.3133 -4.1447 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6054 1.9816 0.8418 32 1 3.8571 0.8801 1.0114 33 1 4.0030 0.9835 -0.7596 34 1 5.1509 2.8862 0.3411 35 1 3.7724 3.4493 -0.6345 36 1 3.6264 3.3458 1.1365 37 1 1.4872 1.5660 -2.0463 38 1 1.2382 5.9842 -1.8507 39 1 -0.7702 4.4429 -4.3034 40 1 -1.6029 5.5115 -6.3550 41 1 -0.7760 7.7250 -7.0216 42 1 2.4196 11.7983 -4.3807 43 1 1.7403 7.8145 -3.5259 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453569690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:19 Heat of formation + Delta-G solvation = -80.077540 kcal Electronic energy + Delta-G solvation = -24735.607720 eV Core-core repulsion = 21165.327285 eV Total energy + Delta-G solvation = -3570.280435 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.13959 -40.57317 -39.13018 -37.81907 -36.22540 -35.22205 -33.44665 -33.00080 -32.30504 -30.69525 -27.77488 -27.13416 -25.92970 -23.54459 -22.94854 -22.74244 -21.70264 -21.29519 -19.77566 -19.40347 -18.15595 -17.91361 -17.30979 -16.95561 -16.74522 -16.38225 -16.00457 -15.28730 -15.26354 -14.96462 -14.85144 -14.74881 -14.43045 -14.21498 -13.91796 -13.90211 -13.64037 -13.28926 -12.96012 -12.73195 -12.65201 -12.52857 -12.35154 -12.20885 -12.01841 -11.89924 -11.76478 -11.64117 -11.61208 -11.45977 -10.96520 -10.63462 -10.20911 -9.54640 -9.03189 -8.91168 -6.55396 0.05643 0.76825 0.81731 1.22635 1.24628 1.38071 1.46002 2.06817 2.08581 2.55243 2.60425 3.31840 3.45856 3.66329 3.97067 4.10025 4.19268 4.33642 4.43292 4.46420 4.54863 4.64254 4.65190 4.70858 4.85517 4.86646 4.89234 4.94340 4.99511 5.09439 5.13048 5.15788 5.24032 5.34706 5.40305 5.43779 5.49086 5.56353 5.79737 5.84897 5.95311 6.18877 6.26915 6.37764 6.60432 6.73227 6.78308 6.87496 8.16705 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.003669 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.146459 B = 7628.890526 C = 8538.128924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.123 4.123 3 C 0.138 3.862 4 C -0.130 4.130 5 C -0.149 4.149 6 N -0.678 5.678 7 C 0.518 3.482 8 O -0.530 6.530 9 C 0.501 3.499 10 O -0.518 6.518 11 N -0.641 5.641 12 C 0.166 3.834 13 C -0.225 4.225 14 C -0.065 4.065 15 C -0.222 4.222 16 C 0.088 3.912 17 C -0.476 4.476 18 H 0.062 0.938 19 C 0.046 3.954 20 N -0.850 5.850 21 Si 0.961 3.039 22 H -0.260 1.260 23 H -0.280 1.280 24 H -0.245 1.245 25 C -0.265 4.265 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.029 0.971 36 H 0.050 0.950 37 H 0.418 0.582 38 H 0.420 0.580 39 H 0.122 0.878 40 H 0.138 0.862 41 H 0.111 0.889 42 H 0.294 0.706 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 -21.364 13.345 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.161 4.161 3 C 0.035 3.965 4 C -0.169 4.169 5 C -0.207 4.207 6 N -0.331 5.331 7 C 0.297 3.703 8 O -0.407 6.407 9 C 0.283 3.717 10 O -0.394 6.394 11 N -0.286 5.286 12 C 0.073 3.927 13 C -0.246 4.246 14 C -0.084 4.084 15 C -0.242 4.242 16 C 0.084 3.916 17 C -0.506 4.506 18 H 0.080 0.920 19 C -0.169 4.169 20 N -0.477 5.477 21 Si 0.786 3.214 22 H -0.186 1.186 23 H -0.207 1.207 24 H -0.169 1.169 25 C -0.286 4.286 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.255 0.745 38 H 0.257 0.743 39 H 0.139 0.861 40 H 0.155 0.845 41 H 0.129 0.871 42 H 0.104 0.896 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.154 -21.168 13.409 25.058 hybrid contribution 0.206 0.886 0.172 0.926 sum 0.052 -20.282 13.581 24.409 Atomic orbital electron populations 1.21813 0.95638 1.02455 1.01553 1.21822 0.96170 0.93170 1.04896 1.21474 0.95376 0.94408 0.85222 1.21983 0.94007 0.97008 1.03856 1.21816 1.00562 0.97093 1.01182 1.45856 1.66707 1.04921 1.15633 1.19600 0.78869 0.84438 0.87359 1.90774 1.49431 1.64648 1.35856 1.20608 0.78630 0.82806 0.89653 1.90751 1.48325 1.64034 1.36265 1.43222 1.62762 1.06998 1.15641 1.17532 0.94949 0.92637 0.87626 1.20651 1.02804 1.01952 0.99190 1.20905 0.98139 0.93929 0.95420 1.21284 1.02053 0.97827 1.03029 1.17658 0.90011 0.92777 0.91107 1.19491 1.37441 0.98161 0.95494 0.91950 1.26823 0.90849 0.93856 1.05359 1.69686 1.27489 1.11657 1.38824 0.85559 0.81173 0.77708 0.77010 1.18609 1.20671 1.16869 1.20741 1.07536 0.97422 1.02885 0.91126 0.93041 0.93683 0.89950 0.88008 0.90008 0.88374 0.90894 0.92543 0.95181 0.93093 0.74463 0.74261 0.86058 0.84457 0.87093 0.89570 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.80 71.98 0.71 -1.04 16 2 C -0.12 -1.11 5.47 30.59 0.17 -0.94 16 3 C 0.14 2.04 2.26 44.99 0.10 2.14 16 4 C -0.13 -1.81 5.61 30.59 0.17 -1.64 16 5 C -0.15 -3.02 8.51 71.98 0.61 -2.41 16 6 N -0.68 -13.18 4.48 -443.95 -1.99 -15.17 16 7 C 0.52 13.92 6.46 87.24 0.56 14.48 16 8 O -0.53 -15.83 13.62 -3.28 -0.04 -15.88 16 9 C 0.50 16.43 7.62 87.24 0.67 17.09 16 10 O -0.52 -18.52 14.13 -3.31 -0.05 -18.57 16 11 N -0.64 -23.29 5.32 -304.98 -1.62 -24.92 16 12 C 0.17 7.11 6.27 38.16 0.24 7.35 16 13 C -0.23 -9.29 8.66 22.59 0.20 -9.10 16 14 C -0.07 -2.63 10.01 22.20 0.22 -2.41 16 15 C -0.22 -10.17 9.79 22.75 0.22 -9.95 16 16 C 0.09 4.48 5.19 -21.31 -0.11 4.37 16 17 C -0.48 -26.64 9.61 23.46 0.23 -26.42 16 18 H 0.06 3.73 8.06 -2.92 -0.02 3.70 16 19 C 0.05 2.45 5.47 85.25 0.47 2.91 16 20 N -0.85 -46.81 13.93 21.82 0.30 -46.50 16 21 Si 0.96 42.75 24.37 68.60 1.67 44.42 16 22 H -0.26 -10.96 6.77 99.48 0.67 -10.29 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.25 -10.97 6.48 99.48 0.64 -10.33 16 25 C -0.26 -12.63 6.83 22.86 0.16 -12.48 16 26 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.04 0.62 7.75 -2.38 -0.02 0.60 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 1.45 7.58 -2.39 -0.02 1.43 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.03 0.75 5.64 -2.39 -0.01 0.74 16 36 H 0.05 1.12 7.85 -2.38 -0.02 1.10 16 37 H 0.42 7.25 8.07 -92.71 -0.75 6.51 16 38 H 0.42 14.07 8.29 -92.71 -0.77 13.30 16 39 H 0.12 4.71 6.39 -2.91 -0.02 4.69 16 40 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 41 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 42 H 0.29 14.56 8.30 -92.71 -0.77 13.79 16 43 H 0.10 4.76 4.20 -2.91 -0.01 4.75 16 Total: -1.00 -63.61 348.99 2.31 -61.30 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: -0.57 Total: 33.35 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 4.60 Total: -18.03 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -3.31 Total: -86.59 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.09 Total: -34.45 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.67 Total: 44.42 kcal Total: -63.61 2.31 -61.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453569690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.779 kcal (2) G-P(sol) polarization free energy of solvation -63.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds