Wall clock time and date at job start Tue Mar 31 2020 09:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46980 * 2 1 4 4 C 1.52999 * 109.46980 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47103 * 180.02562 * 4 3 2 6 6 C 1.46508 * 119.99956 * 269.99703 * 5 4 3 7 7 C 1.34781 * 120.00326 * 90.00092 * 5 4 3 8 8 O 1.21349 * 119.99730 * 355.25519 * 7 5 4 9 9 C 1.49357 * 119.99871 * 175.26565 * 7 5 4 10 10 O 1.21379 * 120.00139 * 354.31741 * 9 7 5 11 11 N 1.34777 * 119.99657 * 174.32058 * 9 7 5 12 12 C 1.39748 * 119.99706 * 184.93119 * 11 9 7 13 13 C 1.39339 * 119.95249 * 323.91987 * 12 11 9 14 14 C 1.38472 * 120.41924 * 180.02562 * 13 12 11 15 15 C 1.37690 * 120.33032 * 0.27101 * 14 13 12 16 16 C 1.40748 * 119.89436 * 359.50583 * 15 14 13 17 17 C 1.41412 * 120.20682 * 180.24411 * 16 15 14 18 18 H 1.07999 * 120.00006 * 329.66895 * 17 16 15 19 19 C 1.39935 * 119.99831 * 149.66383 * 17 16 15 20 20 N 1.30832 * 119.99763 * 169.57098 * 19 17 16 21 21 Si 1.86798 * 120.00158 * 349.56485 * 19 17 16 22 22 H 1.48505 * 109.46827 * 91.41432 * 21 19 17 23 23 H 1.48500 * 109.47453 * 211.41061 * 21 19 17 24 24 H 1.48499 * 109.47221 * 331.41544 * 21 19 17 25 25 C 1.38297 * 119.94689 * 143.94176 * 12 11 9 26 26 H 1.09000 * 109.47125 * 299.99898 * 1 2 3 27 27 H 1.09006 * 109.47207 * 59.99780 * 1 2 3 28 28 H 1.09001 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47166 * 240.00639 * 2 1 3 30 30 H 1.08993 * 109.46995 * 120.00079 * 2 1 3 31 31 H 1.09002 * 109.46650 * 60.00323 * 3 2 1 32 32 H 1.08993 * 109.47322 * 299.99879 * 3 2 1 33 33 H 1.09000 * 109.47125 * 60.00102 * 4 3 2 34 34 H 1.09006 * 109.47207 * 300.00220 * 4 3 2 35 35 H 1.08992 * 109.46999 * 242.03481 * 6 5 4 36 36 H 1.08998 * 109.46836 * 2.03497 * 6 5 4 37 37 H 1.08999 * 109.46850 * 122.03589 * 6 5 4 38 38 H 0.96994 * 120.00289 * 4.93650 * 11 9 7 39 39 H 1.07998 * 119.78866 * 0.02562 * 13 12 11 40 40 H 1.07998 * 119.83370 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.05203 * 179.74063 * 15 14 13 42 42 H 0.97005 * 119.99913 * 180.02562 * 20 19 17 43 43 H 1.08001 * 120.16874 * 359.95533 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.3030 3.5147 -1.2672 7 6 4.2824 3.4588 1.1687 8 8 3.9989 2.9184 2.2176 9 6 4.8797 4.8278 1.1715 10 8 5.2583 5.3268 0.1318 11 7 4.9983 5.5088 2.3285 12 6 5.4608 6.8275 2.3187 13 6 6.4463 7.2124 1.4119 14 6 6.9121 8.5163 1.3941 15 6 6.4099 9.4461 2.2768 16 6 5.4108 9.0733 3.1954 17 6 4.8867 10.0241 4.1014 18 1 5.5081 10.8343 4.4534 19 6 3.5630 9.9154 4.5419 20 7 3.1378 10.6638 5.5272 21 14 2.4029 8.7018 3.7229 22 1 2.4557 7.4038 4.4426 23 1 1.0176 9.2352 3.7654 24 1 2.8130 8.5013 2.3098 25 6 4.9401 7.7484 3.2093 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.9337 0.9286 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 5.3584 3.7769 -1.3403 36 1 4.0331 2.8598 -2.0956 37 1 3.6996 4.4215 -1.3093 38 1 4.7627 5.0838 3.1678 39 1 6.8494 6.4891 0.7185 40 1 7.6758 8.8044 0.6870 41 1 6.7794 10.4608 2.2618 42 1 2.2203 10.5881 5.8327 43 1 4.1760 7.4514 3.9124 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453576005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:50 Heat of formation + Delta-G solvation = -50.519470 kcal Electronic energy + Delta-G solvation = -24545.243213 eV Core-core repulsion = 20976.244512 eV Total energy + Delta-G solvation = -3568.998701 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.86895 -39.05543 -37.45001 -36.68487 -34.97007 -34.17007 -33.33619 -30.44041 -29.87064 -28.96387 -26.95242 -25.39453 -25.17181 -23.06334 -21.72193 -21.48226 -20.44984 -19.56901 -17.92199 -17.59808 -16.85778 -16.27654 -16.02502 -15.63090 -15.46471 -15.06670 -14.63231 -14.47782 -14.07611 -13.83051 -13.37419 -13.26569 -13.09804 -13.06648 -12.75707 -12.60086 -12.55578 -12.15126 -11.68988 -11.63716 -11.54960 -11.40264 -11.31459 -10.92896 -10.86605 -10.80888 -10.56297 -10.15868 -9.91258 -9.47342 -9.19374 -9.11368 -8.93053 -7.67512 -7.31160 -6.93845 -4.54400 1.40070 2.29440 2.53381 2.60995 3.07135 3.17304 3.29927 3.37261 3.55868 3.95457 4.44189 4.49701 4.55533 4.61556 4.76813 4.91471 5.01712 5.23101 5.27579 5.35681 5.46491 5.48335 5.53356 5.62057 5.78276 5.83781 5.91266 5.93212 6.01025 6.20030 6.23547 6.36563 6.46060 6.58338 6.66530 6.88342 7.05058 7.23827 7.32134 7.56151 7.63953 7.75354 7.89311 8.02341 8.21118 8.34555 8.58761 8.76548 10.08804 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017163 B = 0.003726 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.028780 B = 7512.841138 C = 8698.129217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.138 4.138 4 C 0.114 3.886 5 N -0.592 5.592 6 C 0.085 3.915 7 C 0.508 3.492 8 O -0.520 6.520 9 C 0.500 3.500 10 O -0.499 6.499 11 N -0.637 5.637 12 C 0.163 3.837 13 C -0.225 4.225 14 C -0.076 4.076 15 C -0.206 4.206 16 C 0.103 3.897 17 C -0.444 4.444 18 H 0.093 0.907 19 C 0.082 3.918 20 N -0.814 5.814 21 Si 0.912 3.088 22 H -0.272 1.272 23 H -0.293 1.293 24 H -0.243 1.243 25 C -0.255 4.255 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.414 0.586 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.285 0.715 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.360 -17.941 -11.362 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.177 4.177 4 C -0.008 4.008 5 N -0.326 5.326 6 C -0.057 4.057 7 C 0.291 3.709 8 O -0.396 6.396 9 C 0.281 3.719 10 O -0.374 6.374 11 N -0.283 5.283 12 C 0.071 3.929 13 C -0.246 4.246 14 C -0.095 4.095 15 C -0.226 4.226 16 C 0.100 3.900 17 C -0.473 4.473 18 H 0.111 0.889 19 C -0.136 4.136 20 N -0.439 5.439 21 Si 0.740 3.260 22 H -0.199 1.199 23 H -0.221 1.221 24 H -0.167 1.167 25 C -0.276 4.276 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.250 0.750 39 H 0.131 0.869 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.438 -17.762 -11.373 21.232 hybrid contribution -0.846 -0.641 0.208 1.081 sum -3.284 -18.403 -11.165 21.775 Atomic orbital electron populations 1.21762 0.95629 1.01594 1.02008 1.21439 0.96168 0.96124 1.02122 1.22012 0.95115 0.97518 1.03020 1.21668 0.94354 0.81253 1.03533 1.47713 1.64005 1.14276 1.06560 1.22046 1.03556 0.96940 0.83143 1.20284 0.79530 0.86958 0.84151 1.90745 1.50545 1.67321 1.30987 1.19981 0.80916 0.86338 0.84685 1.90749 1.47015 1.68501 1.31091 1.43213 1.62676 1.13092 1.09271 1.17461 0.95388 0.81297 0.98766 1.20466 1.02355 0.97280 1.04503 1.20570 0.98192 0.92989 0.97766 1.21114 1.03961 0.98431 0.99055 1.17523 0.91219 0.90717 0.90566 1.19480 0.97095 1.10358 1.20400 0.88879 1.26124 0.99370 0.95163 0.92893 1.69639 1.18542 1.35050 1.20669 0.86346 0.77543 0.79428 0.82703 1.19880 1.22086 1.16656 1.20816 1.07577 0.93552 1.05635 0.92603 0.92761 0.92703 0.91930 0.91703 0.91209 0.91635 0.89978 0.89630 0.90186 0.91292 0.91192 0.74956 0.86925 0.88154 0.87823 0.90440 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -0.86 5.93 -26.73 -0.16 -1.02 16 3 C -0.14 -1.23 5.54 -26.73 -0.15 -1.38 16 4 C 0.11 1.06 5.33 -4.05 -0.02 1.04 16 5 N -0.59 -7.14 2.87 -182.12 -0.52 -7.66 16 6 C 0.09 0.89 9.07 59.85 0.54 1.44 16 7 C 0.51 7.81 7.72 -11.63 -0.09 7.72 16 8 O -0.52 -8.79 16.11 5.50 0.09 -8.70 16 9 C 0.50 8.79 7.62 -11.63 -0.09 8.70 16 10 O -0.50 -9.23 10.80 5.47 0.06 -9.17 16 11 N -0.64 -12.10 5.31 -10.34 -0.05 -12.16 16 12 C 0.16 3.58 6.27 -83.82 -0.53 3.05 16 13 C -0.23 -4.85 8.70 -39.09 -0.34 -5.19 16 14 C -0.08 -1.61 10.01 -39.70 -0.40 -2.01 16 15 C -0.21 -4.73 9.79 -38.83 -0.38 -5.11 16 16 C 0.10 2.60 5.17 -106.85 -0.55 2.05 16 17 C -0.44 -11.93 9.62 -37.74 -0.36 -12.29 16 18 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 19 C 0.08 2.17 5.48 -17.34 -0.10 2.08 16 20 N -0.81 -21.80 13.93 55.55 0.77 -21.03 16 21 Si 0.91 21.28 24.36 -169.99 -4.14 17.14 16 22 H -0.27 -6.15 6.65 56.52 0.38 -5.77 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.24 -5.89 6.58 56.52 0.37 -5.52 16 25 C -0.25 -6.11 6.86 -38.67 -0.27 -6.37 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.55 7.94 -51.93 -0.41 0.14 16 34 H 0.09 0.87 7.49 -51.93 -0.39 0.48 16 35 H 0.08 0.91 6.94 -51.93 -0.36 0.55 16 36 H 0.07 0.50 7.81 -51.93 -0.41 0.09 16 37 H 0.07 0.83 7.56 -51.93 -0.39 0.43 16 38 H 0.41 7.18 8.30 -40.82 -0.34 6.84 16 39 H 0.11 2.33 6.27 -52.49 -0.33 2.00 16 40 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 41 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 42 H 0.29 6.95 8.30 -40.82 -0.34 6.61 16 43 H 0.10 2.49 4.15 -52.49 -0.22 2.28 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -29.34 352.68 -7.26 -36.60 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.26 Total: 7.65 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.51 Total: -8.00 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.20 Total: -40.85 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.15 Total: -17.86 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.14 Total: 17.14 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.34 -7.26 -36.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453576005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.915 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds