Wall clock time and date at job start Tue Mar 31 2020 09:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46980 * 2 1 4 4 C 1.52999 * 109.46980 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47103 * 180.02562 * 4 3 2 6 6 C 1.46508 * 119.99956 * 269.99703 * 5 4 3 7 7 C 1.34781 * 120.00326 * 90.00092 * 5 4 3 8 8 O 1.21349 * 119.99730 * 355.25519 * 7 5 4 9 9 C 1.49357 * 119.99871 * 175.26565 * 7 5 4 10 10 O 1.21379 * 120.00139 * 354.31741 * 9 7 5 11 11 N 1.34777 * 119.99657 * 174.32058 * 9 7 5 12 12 C 1.39748 * 119.99706 * 184.93119 * 11 9 7 13 13 C 1.39339 * 119.95249 * 323.91987 * 12 11 9 14 14 C 1.38472 * 120.41924 * 180.02562 * 13 12 11 15 15 C 1.37690 * 120.33032 * 0.27101 * 14 13 12 16 16 C 1.40748 * 119.89436 * 359.50583 * 15 14 13 17 17 C 1.41412 * 120.20682 * 180.24411 * 16 15 14 18 18 H 1.07999 * 120.00006 * 329.66895 * 17 16 15 19 19 C 1.39935 * 119.99831 * 149.66383 * 17 16 15 20 20 N 1.30832 * 119.99763 * 169.57098 * 19 17 16 21 21 Si 1.86798 * 120.00158 * 349.56485 * 19 17 16 22 22 H 1.48505 * 109.46827 * 91.41432 * 21 19 17 23 23 H 1.48500 * 109.47453 * 211.41061 * 21 19 17 24 24 H 1.48499 * 109.47221 * 331.41544 * 21 19 17 25 25 C 1.38297 * 119.94689 * 143.94176 * 12 11 9 26 26 H 1.09000 * 109.47125 * 299.99898 * 1 2 3 27 27 H 1.09006 * 109.47207 * 59.99780 * 1 2 3 28 28 H 1.09001 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47166 * 240.00639 * 2 1 3 30 30 H 1.08993 * 109.46995 * 120.00079 * 2 1 3 31 31 H 1.09002 * 109.46650 * 60.00323 * 3 2 1 32 32 H 1.08993 * 109.47322 * 299.99879 * 3 2 1 33 33 H 1.09000 * 109.47125 * 60.00102 * 4 3 2 34 34 H 1.09006 * 109.47207 * 300.00220 * 4 3 2 35 35 H 1.08992 * 109.46999 * 242.03481 * 6 5 4 36 36 H 1.08998 * 109.46836 * 2.03497 * 6 5 4 37 37 H 1.08999 * 109.46850 * 122.03589 * 6 5 4 38 38 H 0.96994 * 120.00289 * 4.93650 * 11 9 7 39 39 H 1.07998 * 119.78866 * 0.02562 * 13 12 11 40 40 H 1.07998 * 119.83370 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.05203 * 179.74063 * 15 14 13 42 42 H 0.97005 * 119.99913 * 180.02562 * 20 19 17 43 43 H 1.08001 * 120.16874 * 359.95533 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.3030 3.5147 -1.2672 7 6 4.2824 3.4588 1.1687 8 8 3.9989 2.9184 2.2176 9 6 4.8797 4.8278 1.1715 10 8 5.2583 5.3268 0.1318 11 7 4.9983 5.5088 2.3285 12 6 5.4608 6.8275 2.3187 13 6 6.4463 7.2124 1.4119 14 6 6.9121 8.5163 1.3941 15 6 6.4099 9.4461 2.2768 16 6 5.4108 9.0733 3.1954 17 6 4.8867 10.0241 4.1014 18 1 5.5081 10.8343 4.4534 19 6 3.5630 9.9154 4.5419 20 7 3.1378 10.6638 5.5272 21 14 2.4029 8.7018 3.7229 22 1 2.4557 7.4038 4.4426 23 1 1.0176 9.2352 3.7654 24 1 2.8130 8.5013 2.3098 25 6 4.9401 7.7484 3.2093 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.9337 0.9286 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 5.3584 3.7769 -1.3403 36 1 4.0331 2.8598 -2.0956 37 1 3.6996 4.4215 -1.3093 38 1 4.7627 5.0838 3.1678 39 1 6.8494 6.4891 0.7185 40 1 7.6758 8.8044 0.6870 41 1 6.7794 10.4608 2.2618 42 1 2.2203 10.5881 5.8327 43 1 4.1760 7.4514 3.9124 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453576005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:49 Heat of formation + Delta-G solvation = -68.292646 kcal Electronic energy + Delta-G solvation = -24546.013915 eV Core-core repulsion = 20976.244512 eV Total energy + Delta-G solvation = -3569.769403 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.18442 -40.45270 -39.07895 -37.68329 -36.24936 -35.38887 -35.05821 -32.30880 -30.85108 -30.40230 -27.94208 -27.14143 -26.37668 -24.16657 -23.50972 -22.21875 -21.87242 -20.99848 -19.42019 -19.16365 -18.13342 -17.86080 -17.28689 -16.99626 -16.58575 -16.42350 -16.13660 -15.84547 -15.27271 -15.15232 -14.85838 -14.60422 -14.30992 -14.07943 -14.03215 -13.96447 -13.50810 -13.44346 -13.32055 -12.83067 -12.73449 -12.56780 -12.34374 -12.31479 -12.17041 -12.02021 -11.92582 -11.77189 -11.48760 -11.15649 -11.05945 -10.52467 -9.91685 -9.52932 -9.05020 -8.90760 -6.56362 0.03953 0.74364 0.77800 1.16270 1.20734 1.33530 1.41504 2.00149 2.05020 2.35913 2.59291 3.14135 3.45608 3.89000 3.91528 4.11889 4.19862 4.29033 4.34163 4.47871 4.55022 4.61219 4.63886 4.70195 4.73309 4.78820 4.85176 4.89504 4.92155 4.98320 5.04400 5.20776 5.24927 5.28403 5.34626 5.44385 5.50245 5.56910 5.79110 5.84273 5.86506 6.11883 6.20326 6.36388 6.53508 6.66717 6.78261 6.83171 8.17398 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017163 B = 0.003726 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.028780 B = 7512.841138 C = 8698.129217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.133 4.133 4 C 0.110 3.890 5 N -0.579 5.579 6 C 0.083 3.917 7 C 0.508 3.492 8 O -0.542 6.542 9 C 0.499 3.501 10 O -0.507 6.507 11 N -0.642 5.642 12 C 0.163 3.837 13 C -0.217 4.217 14 C -0.069 4.069 15 C -0.216 4.216 16 C 0.085 3.915 17 C -0.475 4.475 18 H 0.065 0.935 19 C 0.050 3.950 20 N -0.852 5.852 21 Si 0.961 3.039 22 H -0.262 1.262 23 H -0.280 1.280 24 H -0.257 1.257 25 C -0.266 4.266 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.055 0.945 38 H 0.420 0.580 39 H 0.127 0.873 40 H 0.139 0.861 41 H 0.112 0.888 42 H 0.293 0.707 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 -20.745 -14.169 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.172 4.172 4 C -0.011 4.011 5 N -0.311 5.311 6 C -0.059 4.059 7 C 0.290 3.710 8 O -0.420 6.420 9 C 0.282 3.718 10 O -0.382 6.382 11 N -0.288 5.288 12 C 0.070 3.930 13 C -0.238 4.238 14 C -0.087 4.087 15 C -0.236 4.236 16 C 0.082 3.918 17 C -0.506 4.506 18 H 0.083 0.917 19 C -0.164 4.164 20 N -0.479 5.479 21 Si 0.787 3.213 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.182 1.182 25 C -0.287 4.287 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.128 0.872 37 H 0.074 0.926 38 H 0.258 0.742 39 H 0.145 0.855 40 H 0.157 0.843 41 H 0.130 0.870 42 H 0.104 0.896 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.365 -20.597 -14.207 25.133 hybrid contribution -0.731 0.110 0.890 1.157 sum -3.096 -20.487 -13.317 24.630 Atomic orbital electron populations 1.21779 0.95698 1.02146 1.01555 1.21423 0.96081 0.94928 1.03006 1.21960 0.94752 0.98553 1.01919 1.21950 0.94567 0.79577 1.04971 1.47879 1.62175 1.15104 1.05974 1.22160 1.02860 0.97422 0.83448 1.19884 0.80010 0.86041 0.85078 1.90744 1.51888 1.67432 1.31900 1.20446 0.80293 0.87139 0.83944 1.90734 1.47180 1.69039 1.31209 1.43218 1.63091 1.12162 1.10354 1.17529 0.95011 0.82391 0.98054 1.20800 1.01334 0.97797 1.03885 1.20952 0.98173 0.92249 0.97346 1.21323 1.03596 0.99550 0.99118 1.17684 0.92198 0.90983 0.90947 1.19472 0.97700 1.10820 1.22564 0.91687 1.26672 1.00156 0.96408 0.93195 1.69665 1.19440 1.36791 1.22032 0.85585 0.76525 0.78286 0.80908 1.18821 1.20720 1.18173 1.20850 1.07904 0.93613 1.06347 0.93914 0.92400 0.91674 0.89819 0.92010 0.94177 0.90873 0.86192 0.90519 0.90939 0.87164 0.92591 0.74204 0.85510 0.84323 0.86976 0.89639 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.16 16 2 C -0.12 -1.36 5.93 30.60 0.18 -1.17 16 3 C -0.13 -2.07 5.54 30.60 0.17 -1.90 16 4 C 0.11 1.71 5.33 86.38 0.46 2.17 16 5 N -0.58 -12.42 2.87 -848.47 -2.44 -14.86 16 6 C 0.08 1.46 9.07 127.77 1.16 2.62 16 7 C 0.51 14.81 7.72 87.24 0.67 15.48 16 8 O -0.54 -17.77 16.11 -3.25 -0.05 -17.82 16 9 C 0.50 16.77 7.62 87.24 0.66 17.43 16 10 O -0.51 -17.64 10.80 -3.34 -0.04 -17.68 16 11 N -0.64 -23.64 5.31 -304.98 -1.62 -25.26 16 12 C 0.16 6.98 6.27 38.16 0.24 7.22 16 13 C -0.22 -8.85 8.70 22.59 0.20 -8.66 16 14 C -0.07 -2.72 10.01 22.20 0.22 -2.50 16 15 C -0.22 -9.81 9.79 22.75 0.22 -9.58 16 16 C 0.08 4.34 5.17 -21.31 -0.11 4.23 16 17 C -0.48 -26.60 9.62 23.46 0.23 -26.37 16 18 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 19 C 0.05 2.70 5.48 85.25 0.47 3.16 16 20 N -0.85 -47.19 13.93 21.82 0.30 -46.89 16 21 Si 0.96 44.47 24.36 68.60 1.67 46.14 16 22 H -0.26 -11.56 6.65 99.48 0.66 -10.90 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.26 -12.38 6.58 99.48 0.65 -11.72 16 25 C -0.27 -12.73 6.86 22.86 0.16 -12.58 16 26 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.65 8.14 -2.38 -0.02 0.64 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.12 1.01 7.94 -2.39 -0.02 0.99 16 34 H 0.08 1.38 7.49 -2.38 -0.02 1.37 16 35 H 0.07 1.44 6.94 -2.39 -0.02 1.42 16 36 H 0.11 1.06 7.81 -2.39 -0.02 1.04 16 37 H 0.06 1.18 7.56 -2.39 -0.02 1.16 16 38 H 0.42 14.29 8.30 -92.71 -0.77 13.52 16 39 H 0.13 4.85 6.27 -2.91 -0.02 4.83 16 40 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 42 H 0.29 14.67 8.30 -92.70 -0.77 13.90 16 43 H 0.10 4.83 4.15 -2.91 -0.01 4.81 16 Total: -1.00 -64.56 352.68 3.63 -60.94 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.16 Total: 27.05 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 5.64 Total: -11.61 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -3.75 Total: -87.01 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.09 Total: -35.50 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.67 Total: 46.14 kcal Total: -64.56 3.63 -60.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453576005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.357 kcal (2) G-P(sol) polarization free energy of solvation -64.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds