Wall clock time and date at job start Tue Mar 31 2020 08:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47391 * 2 1 4 4 C 1.52999 * 109.46986 * 59.99820 * 3 2 1 5 5 C 1.52997 * 109.46918 * 300.00251 * 3 2 1 6 6 N 1.46496 * 109.47257 * 180.02562 * 3 2 1 7 7 C 1.34786 * 119.99998 * 180.02562 * 6 3 2 8 8 O 1.21360 * 119.99565 * 359.97438 * 7 6 3 9 9 C 1.49357 * 119.99738 * 180.02562 * 7 6 3 10 10 O 1.21367 * 120.00130 * 359.97438 * 9 7 6 11 11 N 1.34779 * 119.99449 * 180.02562 * 9 7 6 12 12 C 1.39743 * 119.99760 * 185.11399 * 11 9 7 13 13 C 1.39346 * 119.95506 * 34.19586 * 12 11 9 14 14 C 1.38462 * 120.42537 * 180.02562 * 13 12 11 15 15 C 1.37699 * 120.32500 * 0.27137 * 14 13 12 16 16 C 1.40744 * 119.89818 * 359.50349 * 15 14 13 17 17 C 1.41413 * 120.20765 * 180.24756 * 16 15 14 18 18 H 1.08001 * 119.99581 * 205.31354 * 17 16 15 19 19 C 1.39930 * 120.00156 * 25.30876 * 17 16 15 20 20 N 1.30831 * 119.99655 * 16.69397 * 19 17 16 21 21 Si 1.86800 * 120.00043 * 196.69320 * 19 17 16 22 22 H 1.48496 * 109.47106 * 60.00258 * 21 19 17 23 23 H 1.48496 * 109.46888 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47021 * 300.00181 * 21 19 17 25 25 C 1.38301 * 119.94871 * 214.22600 * 12 11 9 26 26 H 1.08997 * 109.47469 * 60.00101 * 1 2 3 27 27 H 1.09010 * 109.47208 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47445 * 300.00025 * 1 2 3 29 29 H 1.09000 * 109.46952 * 239.99822 * 2 1 3 30 30 H 1.09008 * 109.46941 * 120.00374 * 2 1 3 31 31 H 1.09008 * 109.47246 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47317 * 300.00077 * 4 3 2 33 33 H 1.09004 * 109.47294 * 60.00116 * 4 3 2 34 34 H 1.09002 * 109.46837 * 299.99364 * 5 3 2 35 35 H 1.09001 * 109.47415 * 59.99905 * 5 3 2 36 36 H 1.09010 * 109.47239 * 179.97438 * 5 3 2 37 37 H 0.96995 * 120.00245 * 359.97438 * 6 3 2 38 38 H 0.96996 * 120.00010 * 5.10898 * 11 9 7 39 39 H 1.08001 * 119.78612 * 0.02568 * 13 12 11 40 40 H 1.08001 * 119.83905 * 180.02562 * 14 13 12 41 41 H 1.08009 * 120.04933 * 179.74609 * 15 14 13 42 42 H 0.96997 * 119.99325 * 179.97438 * 20 19 17 43 43 H 1.07994 * 120.16744 * 359.94548 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1636 -1.2492 6 7 3.5050 1.4424 -0.0006 7 6 4.1789 2.6096 -0.0002 8 8 3.5721 3.6606 0.0002 9 6 5.6725 2.6095 -0.0014 10 8 6.2793 1.5584 -0.0023 11 7 6.3464 3.7768 -0.0005 12 6 7.7395 3.7793 -0.1095 13 6 8.3785 2.8141 -0.8853 14 6 9.7584 2.8072 -0.9996 15 6 10.5152 3.7516 -0.3428 16 6 9.8837 4.7357 0.4406 17 6 10.6543 5.7119 1.1137 18 1 10.2650 6.1897 2.0006 19 6 11.9209 6.0587 0.6307 20 7 12.2636 5.7436 -0.5920 21 14 13.1227 6.9715 1.7317 22 1 13.4101 6.1526 2.9367 23 1 14.3843 7.2195 0.9887 24 1 12.5287 8.2684 2.1445 25 6 8.4822 4.7394 0.5533 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8938 3.1913 1.2495 32 1 0.4400 2.1637 1.2492 33 1 1.8933 1.6498 2.1393 34 1 1.8934 1.6498 -2.1392 35 1 0.4400 2.1637 -1.2492 36 1 1.8930 3.1915 -1.2490 37 1 3.9900 0.6024 -0.0006 38 1 5.8643 4.6150 0.0758 39 1 7.7936 2.0666 -1.4007 40 1 10.2438 2.0550 -1.6038 41 1 11.5915 3.7396 -0.4319 42 1 13.1415 5.9843 -0.9269 43 1 7.9882 5.4882 1.1546 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453766678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:26 Heat of formation + Delta-G solvation = -58.085132 kcal Electronic energy + Delta-G solvation = -24293.261350 eV Core-core repulsion = 20723.934577 eV Total energy + Delta-G solvation = -3569.326772 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.83910 -39.24177 -37.35010 -37.03555 -34.65606 -33.22203 -32.83790 -29.95430 -29.87551 -28.50408 -27.52207 -25.54798 -25.24521 -23.94300 -21.30545 -20.92804 -19.75192 -19.63080 -18.35776 -17.57605 -16.38122 -16.02708 -15.72554 -15.50153 -15.08210 -14.98682 -14.65442 -14.27197 -14.03082 -13.84300 -13.34122 -12.98319 -12.94543 -12.69215 -12.47109 -12.29530 -12.23786 -11.90553 -11.72497 -11.51188 -11.49713 -11.26282 -11.14840 -11.10267 -10.88340 -10.66894 -10.53791 -10.10084 -9.80344 -9.42153 -9.33561 -9.15093 -8.97113 -7.51514 -6.99472 -6.77514 -4.40188 1.51730 2.47848 2.78847 2.86608 3.06305 3.08924 3.20873 3.54459 3.82962 3.92866 4.35333 4.55767 4.61240 4.69198 4.75393 5.01323 5.05791 5.22170 5.45186 5.50260 5.58659 5.64581 5.65316 5.67901 5.72821 5.80298 6.10922 6.16747 6.22349 6.30924 6.44446 6.59687 6.84649 6.88032 6.99090 7.16778 7.20698 7.48234 7.55501 7.76959 7.95721 7.98635 8.06624 8.22090 8.38746 8.60445 8.85691 8.91304 10.17600 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.038628 B = 0.002586 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.692283 B =10824.113702 C =11178.001713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.170 3.830 4 C -0.167 4.167 5 C -0.167 4.167 6 N -0.698 5.698 7 C 0.514 3.486 8 O -0.518 6.518 9 C 0.495 3.505 10 O -0.507 6.507 11 N -0.632 5.632 12 C 0.146 3.854 13 C -0.224 4.224 14 C -0.095 4.095 15 C -0.163 4.163 16 C 0.122 3.878 17 C -0.463 4.463 18 H 0.078 0.922 19 C 0.076 3.924 20 N -0.794 5.794 21 Si 0.910 3.090 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.266 1.266 25 C -0.239 4.239 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.411 0.589 38 H 0.412 0.588 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.281 0.719 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.782 -7.810 0.359 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.085 3.915 4 C -0.225 4.225 5 C -0.225 4.225 6 N -0.352 5.352 7 C 0.295 3.705 8 O -0.394 6.394 9 C 0.276 3.724 10 O -0.382 6.382 11 N -0.276 5.276 12 C 0.054 3.946 13 C -0.245 4.245 14 C -0.114 4.114 15 C -0.182 4.182 16 C 0.118 3.882 17 C -0.493 4.493 18 H 0.096 0.904 19 C -0.142 4.142 20 N -0.420 5.420 21 Si 0.734 3.266 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.260 4.260 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.248 0.752 38 H 0.248 0.752 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.092 0.908 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.630 -7.777 0.166 19.269 hybrid contribution 0.602 0.426 0.413 0.846 sum -17.027 -7.350 0.579 18.555 Atomic orbital electron populations 1.21854 0.94415 1.02073 1.02567 1.21783 0.97137 0.94608 1.02955 1.20463 0.78298 0.96082 0.96628 1.22294 1.01354 1.02661 0.96202 1.22294 1.01351 1.02661 0.96203 1.45936 1.06944 1.08869 1.73404 1.20252 0.88537 0.84462 0.77210 1.90682 1.69682 1.31221 1.47837 1.20046 0.87868 0.85094 0.79356 1.90770 1.69349 1.30862 1.47221 1.43189 1.06941 1.08530 1.68975 1.17440 0.79189 0.98916 0.99031 1.20284 0.94527 1.02818 1.06855 1.20574 0.93059 0.98297 0.99512 1.21417 0.99817 0.95077 1.01898 1.17370 0.89860 0.90913 0.90007 1.19493 0.99656 1.19375 1.10757 0.90415 1.25896 0.98623 0.94986 0.94653 1.69811 1.20914 1.37127 1.14115 0.86344 0.79143 0.80248 0.80843 1.18820 1.20349 1.19021 1.20734 0.94035 1.02899 1.08358 0.92019 0.92323 0.92025 0.91088 0.91085 0.90231 0.91322 0.92520 0.92520 0.91333 0.90231 0.75226 0.75169 0.88124 0.88845 0.86162 0.90777 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.21 37.16 0.34 -0.53 16 2 C -0.13 -0.89 5.10 -26.74 -0.14 -1.03 16 3 C 0.17 1.61 0.83 -131.83 -0.11 1.50 16 4 C -0.17 -1.60 8.05 37.16 0.30 -1.30 16 5 C -0.17 -1.61 8.05 37.16 0.30 -1.31 16 6 N -0.70 -8.08 5.10 -48.07 -0.25 -8.33 16 7 C 0.51 7.56 7.31 -11.62 -0.08 7.47 16 8 O -0.52 -8.10 12.69 5.49 0.07 -8.03 16 9 C 0.50 8.81 7.61 -11.63 -0.09 8.72 16 10 O -0.51 -10.08 14.20 5.48 0.08 -10.01 16 11 N -0.63 -11.94 5.32 -10.34 -0.05 -11.99 16 12 C 0.15 3.31 6.25 -83.82 -0.52 2.79 16 13 C -0.22 -5.26 8.66 -39.09 -0.34 -5.60 16 14 C -0.10 -2.29 10.01 -39.70 -0.40 -2.68 16 15 C -0.16 -4.22 8.69 -38.83 -0.34 -4.56 16 16 C 0.12 3.22 5.57 -106.85 -0.59 2.62 16 17 C -0.46 -12.13 9.05 -37.74 -0.34 -12.47 16 18 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 19 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 20 N -0.79 -20.30 10.94 55.55 0.61 -19.69 16 21 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 C -0.24 -5.80 9.70 -38.67 -0.38 -6.17 16 26 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 27 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 28 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.08 0.95 6.17 -51.92 -0.32 0.63 16 32 H 0.07 0.53 6.43 -51.93 -0.33 0.19 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.53 6.43 -51.93 -0.33 0.19 16 36 H 0.08 0.96 6.17 -51.92 -0.32 0.64 16 37 H 0.41 4.41 7.94 -40.82 -0.32 4.08 16 38 H 0.41 6.91 8.30 -40.82 -0.34 6.57 16 39 H 0.10 2.29 6.46 -52.49 -0.34 1.96 16 40 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 41 H 0.12 3.19 6.17 -52.48 -0.32 2.87 16 42 H 0.28 6.55 8.30 -40.82 -0.34 6.22 16 43 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -28.98 348.35 -7.61 -36.59 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -5.81 Total: 13.49 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.48 Total: -10.75 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.31 Total: -40.01 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.15 Total: -18.04 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.98 -7.61 -36.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453766678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.493 kcal (2) G-P(sol) polarization free energy of solvation -28.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds