Wall clock time and date at job start Tue Mar 31 2020 08:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47391 * 2 1 4 4 C 1.52999 * 109.46986 * 59.99820 * 3 2 1 5 5 C 1.52997 * 109.46918 * 300.00251 * 3 2 1 6 6 N 1.46496 * 109.47257 * 180.02562 * 3 2 1 7 7 C 1.34786 * 119.99998 * 180.02562 * 6 3 2 8 8 O 1.21360 * 119.99565 * 359.97438 * 7 6 3 9 9 C 1.49357 * 119.99738 * 180.02562 * 7 6 3 10 10 O 1.21367 * 120.00130 * 359.97438 * 9 7 6 11 11 N 1.34779 * 119.99449 * 180.02562 * 9 7 6 12 12 C 1.39743 * 119.99760 * 185.11399 * 11 9 7 13 13 C 1.39346 * 119.95506 * 34.19586 * 12 11 9 14 14 C 1.38462 * 120.42537 * 180.02562 * 13 12 11 15 15 C 1.37699 * 120.32500 * 0.27137 * 14 13 12 16 16 C 1.40744 * 119.89818 * 359.50349 * 15 14 13 17 17 C 1.41413 * 120.20765 * 180.24756 * 16 15 14 18 18 H 1.08001 * 119.99581 * 205.31354 * 17 16 15 19 19 C 1.39930 * 120.00156 * 25.30876 * 17 16 15 20 20 N 1.30831 * 119.99655 * 16.69397 * 19 17 16 21 21 Si 1.86800 * 120.00043 * 196.69320 * 19 17 16 22 22 H 1.48496 * 109.47106 * 60.00258 * 21 19 17 23 23 H 1.48496 * 109.46888 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47021 * 300.00181 * 21 19 17 25 25 C 1.38301 * 119.94871 * 214.22600 * 12 11 9 26 26 H 1.08997 * 109.47469 * 60.00101 * 1 2 3 27 27 H 1.09010 * 109.47208 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47445 * 300.00025 * 1 2 3 29 29 H 1.09000 * 109.46952 * 239.99822 * 2 1 3 30 30 H 1.09008 * 109.46941 * 120.00374 * 2 1 3 31 31 H 1.09008 * 109.47246 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47317 * 300.00077 * 4 3 2 33 33 H 1.09004 * 109.47294 * 60.00116 * 4 3 2 34 34 H 1.09002 * 109.46837 * 299.99364 * 5 3 2 35 35 H 1.09001 * 109.47415 * 59.99905 * 5 3 2 36 36 H 1.09010 * 109.47239 * 179.97438 * 5 3 2 37 37 H 0.96995 * 120.00245 * 359.97438 * 6 3 2 38 38 H 0.96996 * 120.00010 * 5.10898 * 11 9 7 39 39 H 1.08001 * 119.78612 * 0.02568 * 13 12 11 40 40 H 1.08001 * 119.83905 * 180.02562 * 14 13 12 41 41 H 1.08009 * 120.04933 * 179.74609 * 15 14 13 42 42 H 0.96997 * 119.99325 * 179.97438 * 20 19 17 43 43 H 1.07994 * 120.16744 * 359.94548 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1636 -1.2492 6 7 3.5050 1.4424 -0.0006 7 6 4.1789 2.6096 -0.0002 8 8 3.5721 3.6606 0.0002 9 6 5.6725 2.6095 -0.0014 10 8 6.2793 1.5584 -0.0023 11 7 6.3464 3.7768 -0.0005 12 6 7.7395 3.7793 -0.1095 13 6 8.3785 2.8141 -0.8853 14 6 9.7584 2.8072 -0.9996 15 6 10.5152 3.7516 -0.3428 16 6 9.8837 4.7357 0.4406 17 6 10.6543 5.7119 1.1137 18 1 10.2650 6.1897 2.0006 19 6 11.9209 6.0587 0.6307 20 7 12.2636 5.7436 -0.5920 21 14 13.1227 6.9715 1.7317 22 1 13.4101 6.1526 2.9367 23 1 14.3843 7.2195 0.9887 24 1 12.5287 8.2684 2.1445 25 6 8.4822 4.7394 0.5533 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8938 3.1913 1.2495 32 1 0.4400 2.1637 1.2492 33 1 1.8933 1.6498 2.1393 34 1 1.8934 1.6498 -2.1392 35 1 0.4400 2.1637 -1.2492 36 1 1.8930 3.1915 -1.2490 37 1 3.9900 0.6024 -0.0006 38 1 5.8643 4.6150 0.0758 39 1 7.7936 2.0666 -1.4007 40 1 10.2438 2.0550 -1.6038 41 1 11.5915 3.7396 -0.4319 42 1 13.1415 5.9843 -0.9269 43 1 7.9882 5.4882 1.1546 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453766678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:26 Heat of formation + Delta-G solvation = -75.856718 kcal Electronic energy + Delta-G solvation = -24294.031983 eV Core-core repulsion = 20723.934577 eV Total energy + Delta-G solvation = -3570.097406 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.11095 -40.59391 -38.99646 -38.12468 -36.33776 -34.94192 -33.86800 -31.81041 -30.71493 -30.18836 -28.28294 -27.25405 -26.55313 -24.93307 -23.01674 -22.62117 -21.19523 -20.53346 -19.75005 -19.23488 -17.71917 -17.37162 -17.05865 -16.96697 -16.62896 -16.38552 -15.72047 -15.58843 -15.36613 -14.81605 -14.74905 -14.66944 -14.11967 -14.03123 -13.57952 -13.37991 -13.29260 -13.12767 -12.98352 -12.83131 -12.67059 -12.55238 -12.53656 -12.26176 -12.17151 -11.89018 -11.65311 -11.61460 -11.56552 -11.20170 -10.87381 -10.49354 -10.31361 -9.45036 -8.84022 -8.64343 -6.38211 0.14027 0.94817 1.02160 1.30621 1.40470 1.51373 1.55888 2.12400 2.22040 2.60307 2.73508 3.33270 3.69230 3.71426 3.90228 4.05041 4.38404 4.43908 4.47596 4.58567 4.60025 4.74833 4.79303 4.89648 4.94800 4.98385 4.98815 5.04457 5.08704 5.12254 5.12635 5.18196 5.29811 5.40023 5.44140 5.49482 5.64259 5.72739 5.95554 6.05349 6.08615 6.26817 6.44660 6.62838 6.73942 6.89014 6.91419 7.01029 8.33037 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.038628 B = 0.002586 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.692283 B =10824.113702 C =11178.001713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.165 3.835 4 C -0.165 4.165 5 C -0.165 4.165 6 N -0.683 5.683 7 C 0.522 3.478 8 O -0.528 6.528 9 C 0.496 3.504 10 O -0.527 6.527 11 N -0.632 5.632 12 C 0.155 3.845 13 C -0.233 4.233 14 C -0.095 4.095 15 C -0.189 4.189 16 C 0.095 3.905 17 C -0.496 4.496 18 H 0.079 0.921 19 C 0.036 3.964 20 N -0.823 5.823 21 Si 0.984 3.016 22 H -0.261 1.261 23 H -0.268 1.268 24 H -0.259 1.259 25 C -0.253 4.253 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.417 0.583 38 H 0.422 0.578 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.289 0.711 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.259 -8.464 0.733 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C 0.081 3.919 4 C -0.223 4.223 5 C -0.223 4.223 6 N -0.336 5.336 7 C 0.302 3.698 8 O -0.405 6.405 9 C 0.279 3.721 10 O -0.403 6.403 11 N -0.278 5.278 12 C 0.062 3.938 13 C -0.254 4.254 14 C -0.113 4.113 15 C -0.209 4.209 16 C 0.092 3.908 17 C -0.525 4.525 18 H 0.097 0.903 19 C -0.180 4.180 20 N -0.448 5.448 21 Si 0.805 3.195 22 H -0.186 1.186 23 H -0.192 1.192 24 H -0.183 1.183 25 C -0.274 4.274 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.254 0.746 38 H 0.260 0.740 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.159 -8.456 0.531 20.949 hybrid contribution 0.934 0.550 0.254 1.113 sum -18.225 -7.907 0.785 19.882 Atomic orbital electron populations 1.21864 0.93108 1.02946 1.02875 1.21775 0.98123 0.92529 1.03524 1.20754 0.76559 0.97985 0.96637 1.22274 1.02775 1.01002 0.96234 1.22274 1.02775 1.00984 0.96243 1.46014 1.08062 1.07956 1.71545 1.19647 0.86794 0.85349 0.78058 1.90701 1.69198 1.31773 1.48828 1.20649 0.89397 0.84180 0.77917 1.90752 1.70297 1.31475 1.47798 1.43130 1.05560 1.09729 1.69340 1.17460 0.80985 0.97761 0.97550 1.20453 0.94499 1.03281 1.07178 1.20820 0.93426 0.98110 0.98990 1.21371 0.99388 0.96376 1.03738 1.17744 0.91060 0.91426 0.90596 1.19774 1.01159 1.20237 1.11336 0.90317 1.26768 0.99785 0.95581 0.95829 1.69865 1.21708 1.37720 1.15529 0.85222 0.76780 0.78883 0.78654 1.18563 1.19185 1.18315 1.20878 0.93670 1.03851 1.09021 0.91707 0.91245 0.91710 0.90559 0.90565 0.92780 0.89109 0.92362 0.92364 0.89118 0.92808 0.74590 0.73985 0.87337 0.86669 0.87478 0.89983 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.21 71.98 0.66 -0.58 16 2 C -0.12 -1.37 5.10 30.59 0.16 -1.21 16 3 C 0.16 2.77 0.83 3.60 0.00 2.77 16 4 C -0.17 -2.86 8.05 71.98 0.58 -2.28 16 5 C -0.17 -2.86 8.05 71.98 0.58 -2.28 16 6 N -0.68 -14.81 5.10 -424.34 -2.16 -16.97 16 7 C 0.52 14.88 7.31 87.24 0.64 15.52 16 8 O -0.53 -16.20 12.69 -3.28 -0.04 -16.24 16 9 C 0.50 17.37 7.61 87.24 0.66 18.03 16 10 O -0.53 -20.64 14.20 -3.30 -0.05 -20.69 16 11 N -0.63 -23.76 5.32 -304.98 -1.62 -25.38 16 12 C 0.16 7.10 6.25 38.16 0.24 7.34 16 13 C -0.23 -10.98 8.66 22.59 0.20 -10.79 16 14 C -0.09 -4.59 10.01 22.20 0.22 -4.36 16 15 C -0.19 -10.10 8.69 22.75 0.20 -9.91 16 16 C 0.09 5.16 5.57 -21.31 -0.12 5.04 16 17 C -0.50 -26.58 9.05 23.46 0.21 -26.37 16 18 H 0.08 4.04 7.90 -2.91 -0.02 4.02 16 19 C 0.04 1.79 5.16 85.25 0.44 2.23 16 20 N -0.82 -42.71 10.94 21.82 0.24 -42.48 16 21 Si 0.98 37.85 29.59 68.60 2.03 39.88 16 22 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 23 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 24 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 25 C -0.25 -12.50 9.70 22.86 0.22 -12.28 16 26 H 0.06 0.51 6.43 -2.39 -0.02 0.49 16 27 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 28 H 0.06 0.51 6.43 -2.39 -0.02 0.49 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.05 1.24 6.17 -2.38 -0.01 1.23 16 32 H 0.09 1.15 6.43 -2.39 -0.02 1.14 16 33 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 1.15 6.43 -2.39 -0.02 1.14 16 36 H 0.05 1.24 6.17 -2.38 -0.01 1.22 16 37 H 0.42 8.24 7.94 -92.71 -0.74 7.50 16 38 H 0.42 14.08 8.30 -92.71 -0.77 13.31 16 39 H 0.11 4.90 6.46 -2.91 -0.02 4.88 16 40 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 41 H 0.11 5.91 6.17 -2.91 -0.02 5.89 16 42 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 43 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -63.05 348.35 2.84 -60.21 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: -0.45 Total: 40.79 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 4.89 Total: -19.13 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -3.55 Total: -84.82 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.09 Total: -36.93 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -63.05 2.84 -60.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453766678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.643 kcal (2) G-P(sol) polarization free energy of solvation -63.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds