Wall clock time and date at job start Tue Mar 31 2020 08:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99565 * 2 1 4 4 C 1.53006 * 109.47100 * 125.00023 * 3 2 1 5 5 C 1.53001 * 109.47073 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47205 * 54.99855 * 5 4 3 7 7 C 1.53002 * 109.46842 * 175.00110 * 5 4 3 8 8 O 1.42895 * 109.47214 * 54.99886 * 7 5 4 9 9 N 1.46497 * 109.46906 * 294.99668 * 5 4 3 10 10 C 1.34778 * 120.00096 * 155.00382 * 9 5 4 11 11 O 1.21585 * 119.99783 * 359.97438 * 10 9 5 12 12 N 1.34775 * 120.00279 * 180.02562 * 10 9 5 13 13 C 1.39240 * 120.00054 * 184.29959 * 12 10 9 14 14 C 1.39480 * 119.83595 * 324.47267 * 13 12 10 15 15 C 1.36370 * 120.17164 * 179.71449 * 14 13 12 16 16 C 1.40875 * 119.82702 * 0.57992 * 15 14 13 17 17 C 1.41149 * 120.16153 * 179.67244 * 16 15 14 18 18 H 1.08006 * 119.99898 * 214.79446 * 17 16 15 19 19 C 1.39892 * 120.00473 * 34.80707 * 17 16 15 20 20 N 1.30883 * 119.99681 * 355.55426 * 19 17 16 21 21 Si 1.86797 * 120.00450 * 175.55763 * 19 17 16 22 22 H 1.48505 * 109.46893 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47109 * 119.99374 * 21 19 17 24 24 H 1.48498 * 109.47305 * 240.00113 * 21 19 17 25 25 C 1.40870 * 119.66923 * 359.69589 * 16 15 14 26 26 C 1.36372 * 119.83186 * 359.97438 * 25 16 15 27 27 H 1.08000 * 119.99209 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00284 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00208 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47311 * 5.00036 * 3 2 1 31 31 H 1.08996 * 109.47333 * 244.99770 * 3 2 1 32 32 H 1.08998 * 109.47028 * 59.99840 * 4 3 2 33 33 H 1.09003 * 109.46793 * 299.99701 * 4 3 2 34 34 H 1.09001 * 109.46739 * 174.99878 * 7 5 4 35 35 H 1.08998 * 109.46809 * 294.99488 * 7 5 4 36 36 H 0.96701 * 113.99893 * 180.02562 * 8 7 5 37 37 H 0.97001 * 119.99947 * 335.00614 * 9 5 4 38 38 H 0.97006 * 119.99911 * 4.29704 * 12 10 9 39 39 H 1.08007 * 119.91272 * 359.97438 * 14 13 12 40 40 H 1.07999 * 120.09049 * 180.25171 * 15 14 13 41 41 H 0.96998 * 119.99963 * 180.02562 * 20 19 17 42 42 H 1.07999 * 120.08282 * 179.97438 * 25 16 15 43 43 H 1.08003 * 119.91653 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7995 2.6586 1.1820 6 1 3.0908 3.4868 1.1823 7 6 4.6791 2.7396 2.4313 8 8 5.5283 1.5919 2.4912 9 7 4.6417 2.7368 -0.0141 10 6 5.0047 3.9382 -0.5053 11 8 4.6328 4.9571 0.0441 12 7 5.7791 4.0102 -1.6060 13 6 6.2282 5.2470 -2.0616 14 6 5.4074 6.3688 -1.9464 15 6 5.8425 7.5844 -2.3851 16 6 7.1200 7.7032 -2.9669 17 6 7.5748 8.9567 -3.4296 18 1 8.2013 9.0134 -4.3076 19 6 7.2145 10.1257 -2.7509 20 7 6.3858 10.0661 -1.7395 21 14 7.9158 11.7716 -3.2880 22 1 8.8212 11.5692 -4.4475 23 1 6.8067 12.6784 -3.6791 24 1 8.6766 12.3757 -2.1649 25 6 7.9410 6.5646 -3.0850 26 6 7.4947 5.3568 -2.6356 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4028 -0.9313 32 1 3.7400 0.5068 1.0921 33 1 2.4772 1.2357 2.1130 34 1 5.2896 3.6415 2.3879 35 1 4.0473 2.7709 3.3190 36 1 6.1148 1.5763 3.2598 37 1 4.9380 1.9239 -0.4526 38 1 6.0237 3.2004 -2.0808 39 1 4.4261 6.2751 -1.5048 40 1 5.2074 8.4529 -2.2915 41 1 6.1356 10.8767 -1.2691 42 1 8.9214 6.6479 -3.5303 43 1 8.1232 4.4831 -2.7251 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454340881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:46 Heat of formation + Delta-G solvation = -45.428925 kcal Electronic energy + Delta-G solvation = -24131.949468 eV Core-core repulsion = 20563.171510 eV Total energy + Delta-G solvation = -3568.777958 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.03274 -38.10163 -36.98298 -35.94447 -34.44064 -34.03942 -32.84801 -31.01226 -29.41504 -28.81138 -28.00693 -24.86657 -23.83511 -21.88831 -21.13854 -20.54046 -19.99972 -19.92491 -18.04966 -17.35382 -17.22459 -16.60766 -15.75974 -15.46801 -15.05874 -14.85040 -14.54790 -14.23180 -13.85435 -13.79864 -13.43932 -13.19560 -12.88135 -12.61470 -12.51272 -12.03437 -11.84869 -11.65362 -11.57966 -11.38726 -11.13722 -11.03069 -10.91423 -10.84238 -10.45133 -10.11832 -9.89588 -9.81992 -9.57125 -9.52626 -9.05361 -8.78592 -8.68811 -7.44761 -6.79616 -6.53113 -4.26521 2.05543 2.74035 3.07627 3.11586 3.14457 3.18025 3.22643 3.75933 4.03640 4.22588 4.43547 4.68380 4.78984 4.80384 4.90949 5.04135 5.14705 5.29928 5.39127 5.52196 5.61262 5.70334 5.72663 5.79197 5.90473 6.09941 6.20017 6.40371 6.44282 6.54773 6.70464 6.89201 6.93516 7.11515 7.22423 7.35842 7.46672 7.49889 7.72012 7.91495 8.09693 8.16322 8.36884 8.56066 8.74679 9.00205 9.01414 9.18710 10.37994 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022883 B = 0.002723 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.310041 B =10281.827148 C =10462.388555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.097 4.097 4 C -0.115 4.115 5 C 0.170 3.830 6 H 0.100 0.900 7 C 0.061 3.939 8 O -0.570 6.570 9 N -0.740 5.740 10 C 0.695 3.305 11 O -0.578 6.578 12 N -0.669 5.669 13 C 0.027 3.973 14 C -0.094 4.094 15 C -0.143 4.143 16 C 0.097 3.903 17 C -0.464 4.464 18 H 0.075 0.925 19 C 0.068 3.932 20 N -0.810 5.810 21 Si 0.914 3.086 22 H -0.263 1.263 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.203 4.203 26 C -0.118 4.118 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.376 0.624 37 H 0.393 0.607 38 H 0.390 0.610 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.276 0.724 42 H 0.096 0.904 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 -17.220 6.098 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.168 4.168 3 C -0.134 4.134 4 C -0.153 4.153 5 C 0.063 3.937 6 H 0.117 0.883 7 C -0.019 4.019 8 O -0.375 6.375 9 N -0.396 5.396 10 C 0.395 3.605 11 O -0.455 6.455 12 N -0.315 5.315 13 C -0.065 4.065 14 C -0.115 4.115 15 C -0.163 4.163 16 C 0.094 3.906 17 C -0.495 4.495 18 H 0.093 0.907 19 C -0.146 4.146 20 N -0.437 5.437 21 Si 0.739 3.261 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.223 4.223 26 C -0.138 4.138 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.222 0.778 37 H 0.227 0.773 38 H 0.223 0.777 39 H 0.126 0.874 40 H 0.148 0.852 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.267 -16.253 6.240 18.865 hybrid contribution 0.959 0.095 0.104 0.969 sum -6.308 -16.158 6.344 18.469 Atomic orbital electron populations 1.23859 0.96043 1.01756 1.01966 1.22989 0.96011 0.98547 0.99223 1.20813 0.98231 0.95248 0.99153 1.21709 0.97649 0.97186 0.98713 1.20854 0.91016 0.98837 0.82943 0.88251 1.22718 0.93133 0.88519 0.97485 1.86430 1.55845 1.44620 1.50613 1.45085 1.56610 1.06882 1.31011 1.16054 0.79993 0.83726 0.80685 1.90925 1.59259 1.33360 1.61954 1.42109 1.53364 1.08710 1.27293 1.17090 0.95109 0.84215 1.10132 1.20672 0.98665 0.92414 0.99714 1.21306 0.96566 0.95899 1.02507 1.17722 0.90483 0.92150 0.90199 1.19486 1.27927 0.90529 1.11538 0.90699 1.25879 0.93764 1.00923 0.94081 1.69808 1.27003 1.30025 1.16846 0.86176 0.79389 0.81157 0.79375 1.18673 1.20055 1.20073 1.20671 0.99224 0.93145 1.09277 1.20056 0.93295 0.97094 1.03365 0.88723 0.88588 0.87510 0.91363 0.90688 0.90448 0.90634 0.92610 0.93167 0.77789 0.77322 0.77676 0.87370 0.85225 0.91249 0.88611 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 14.32 29.01 0.42 -1.16 16 2 C -0.15 -1.23 9.52 -36.02 -0.34 -1.57 16 3 C -0.10 -0.87 5.54 -27.88 -0.15 -1.03 16 4 C -0.11 -1.02 4.45 -26.73 -0.12 -1.14 16 5 C 0.17 1.97 2.37 -67.93 -0.16 1.81 16 6 H 0.10 1.31 7.58 -51.93 -0.39 0.92 16 7 C 0.06 0.68 6.85 37.16 0.25 0.93 16 8 O -0.57 -5.81 12.83 -35.23 -0.45 -6.26 16 9 N -0.74 -9.61 4.48 -58.68 -0.26 -9.87 16 10 C 0.69 12.56 8.36 -86.92 -0.73 11.84 16 11 O -0.58 -13.03 13.44 5.29 0.07 -12.96 16 12 N -0.67 -12.04 5.31 -14.10 -0.07 -12.11 16 13 C 0.03 0.62 6.30 -83.57 -0.53 0.09 16 14 C -0.09 -2.40 8.61 -39.79 -0.34 -2.74 16 15 C -0.14 -3.90 8.61 -39.26 -0.34 -4.24 16 16 C 0.10 2.65 5.55 -106.80 -0.59 2.05 16 17 C -0.46 -12.59 9.02 -37.86 -0.34 -12.93 16 18 H 0.07 1.94 7.85 -52.48 -0.41 1.53 16 19 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 20 N -0.81 -21.98 10.60 55.55 0.59 -21.39 16 21 Si 0.91 19.45 29.56 -169.99 -5.03 14.42 16 22 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 C -0.20 -5.00 9.74 -39.26 -0.38 -5.38 16 26 C -0.12 -2.62 9.90 -39.79 -0.39 -3.01 16 27 H 0.09 0.63 8.06 -52.49 -0.42 0.21 16 28 H 0.10 0.75 7.84 -52.49 -0.41 0.34 16 29 H 0.11 0.78 8.06 -52.49 -0.42 0.35 16 30 H 0.07 0.65 7.79 -51.93 -0.40 0.25 16 31 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 32 H 0.08 0.69 7.73 -51.93 -0.40 0.29 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.38 2.42 9.12 45.56 0.42 2.83 16 37 H 0.39 4.17 8.62 -40.82 -0.35 3.82 16 38 H 0.39 5.49 8.83 -40.82 -0.36 5.13 16 39 H 0.11 2.78 6.24 -52.48 -0.33 2.45 16 40 H 0.13 3.71 6.13 -52.49 -0.32 3.39 16 41 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 42 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -32.32 362.54 -9.00 -41.32 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -5.47 Total: 16.17 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -3.85 Total: -14.79 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.25 Total: -43.38 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.38 Total: -19.22 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.32 -9.00 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454340881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.108 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds