Wall clock time and date at job start Tue Mar 31 2020 08:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99565 * 2 1 4 4 C 1.53006 * 109.47100 * 125.00023 * 3 2 1 5 5 C 1.53001 * 109.47073 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47205 * 54.99855 * 5 4 3 7 7 C 1.53002 * 109.46842 * 175.00110 * 5 4 3 8 8 O 1.42895 * 109.47214 * 54.99886 * 7 5 4 9 9 N 1.46497 * 109.46906 * 294.99668 * 5 4 3 10 10 C 1.34778 * 120.00096 * 155.00382 * 9 5 4 11 11 O 1.21585 * 119.99783 * 359.97438 * 10 9 5 12 12 N 1.34775 * 120.00279 * 180.02562 * 10 9 5 13 13 C 1.39240 * 120.00054 * 184.29959 * 12 10 9 14 14 C 1.39480 * 119.83595 * 324.47267 * 13 12 10 15 15 C 1.36370 * 120.17164 * 179.71449 * 14 13 12 16 16 C 1.40875 * 119.82702 * 0.57992 * 15 14 13 17 17 C 1.41149 * 120.16153 * 179.67244 * 16 15 14 18 18 H 1.08006 * 119.99898 * 214.79446 * 17 16 15 19 19 C 1.39892 * 120.00473 * 34.80707 * 17 16 15 20 20 N 1.30883 * 119.99681 * 355.55426 * 19 17 16 21 21 Si 1.86797 * 120.00450 * 175.55763 * 19 17 16 22 22 H 1.48505 * 109.46893 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47109 * 119.99374 * 21 19 17 24 24 H 1.48498 * 109.47305 * 240.00113 * 21 19 17 25 25 C 1.40870 * 119.66923 * 359.69589 * 16 15 14 26 26 C 1.36372 * 119.83186 * 359.97438 * 25 16 15 27 27 H 1.08000 * 119.99209 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00284 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00208 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47311 * 5.00036 * 3 2 1 31 31 H 1.08996 * 109.47333 * 244.99770 * 3 2 1 32 32 H 1.08998 * 109.47028 * 59.99840 * 4 3 2 33 33 H 1.09003 * 109.46793 * 299.99701 * 4 3 2 34 34 H 1.09001 * 109.46739 * 174.99878 * 7 5 4 35 35 H 1.08998 * 109.46809 * 294.99488 * 7 5 4 36 36 H 0.96701 * 113.99893 * 180.02562 * 8 7 5 37 37 H 0.97001 * 119.99947 * 335.00614 * 9 5 4 38 38 H 0.97006 * 119.99911 * 4.29704 * 12 10 9 39 39 H 1.08007 * 119.91272 * 359.97438 * 14 13 12 40 40 H 1.07999 * 120.09049 * 180.25171 * 15 14 13 41 41 H 0.96998 * 119.99963 * 180.02562 * 20 19 17 42 42 H 1.07999 * 120.08282 * 179.97438 * 25 16 15 43 43 H 1.08003 * 119.91653 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7995 2.6586 1.1820 6 1 3.0908 3.4868 1.1823 7 6 4.6791 2.7396 2.4313 8 8 5.5283 1.5919 2.4912 9 7 4.6417 2.7368 -0.0141 10 6 5.0047 3.9382 -0.5053 11 8 4.6328 4.9571 0.0441 12 7 5.7791 4.0102 -1.6060 13 6 6.2282 5.2470 -2.0616 14 6 5.4074 6.3688 -1.9464 15 6 5.8425 7.5844 -2.3851 16 6 7.1200 7.7032 -2.9669 17 6 7.5748 8.9567 -3.4296 18 1 8.2013 9.0134 -4.3076 19 6 7.2145 10.1257 -2.7509 20 7 6.3858 10.0661 -1.7395 21 14 7.9158 11.7716 -3.2880 22 1 8.8212 11.5692 -4.4475 23 1 6.8067 12.6784 -3.6791 24 1 8.6766 12.3757 -2.1649 25 6 7.9410 6.5646 -3.0850 26 6 7.4947 5.3568 -2.6356 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4028 -0.9313 32 1 3.7400 0.5068 1.0921 33 1 2.4772 1.2357 2.1130 34 1 5.2896 3.6415 2.3879 35 1 4.0473 2.7709 3.3190 36 1 6.1148 1.5763 3.2598 37 1 4.9380 1.9239 -0.4526 38 1 6.0237 3.2004 -2.0808 39 1 4.4261 6.2751 -1.5048 40 1 5.2074 8.4529 -2.2915 41 1 6.1356 10.8767 -1.2691 42 1 8.9214 6.6479 -3.5303 43 1 8.1232 4.4831 -2.7251 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454340881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:45 Heat of formation + Delta-G solvation = -67.939647 kcal Electronic energy + Delta-G solvation = -24132.925606 eV Core-core repulsion = 20563.171510 eV Total energy + Delta-G solvation = -3569.754096 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.48496 -39.54028 -38.38908 -36.71350 -36.11689 -35.18217 -34.60982 -32.12123 -31.35254 -30.49777 -28.97245 -26.70957 -24.69073 -23.44964 -22.97267 -21.74994 -21.51898 -20.59629 -19.45617 -19.18569 -18.31490 -18.09172 -17.09838 -16.68093 -16.51300 -15.91945 -15.77201 -15.65120 -15.32146 -14.91570 -14.77989 -14.55368 -14.21711 -13.97833 -13.80889 -13.62205 -13.33783 -13.27209 -12.86899 -12.68324 -12.53748 -12.33572 -12.29628 -11.83181 -11.75134 -11.66273 -11.63882 -11.28830 -10.98047 -10.86297 -10.50532 -10.27421 -9.95149 -9.41480 -8.67627 -8.46765 -6.29429 0.89051 1.16296 1.39524 1.43776 1.47553 1.55693 1.79210 2.22877 2.27138 2.85422 3.37731 3.42765 3.67157 3.72977 4.01044 4.15119 4.32000 4.40839 4.46255 4.48978 4.51740 4.58340 4.66730 4.81809 4.94589 5.00944 5.06954 5.14093 5.14959 5.19835 5.35577 5.36936 5.46350 5.60588 5.73312 5.78599 5.84004 5.93802 6.12763 6.18679 6.24094 6.41046 6.74761 6.85590 6.99417 7.06351 7.19930 7.70962 8.46424 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022883 B = 0.002723 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.310041 B =10281.827148 C =10462.388555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.096 4.096 4 C -0.099 4.099 5 C 0.163 3.837 6 H 0.079 0.921 7 C 0.068 3.932 8 O -0.574 6.574 9 N -0.716 5.716 10 C 0.692 3.308 11 O -0.625 6.625 12 N -0.660 5.660 13 C 0.043 3.957 14 C -0.108 4.108 15 C -0.167 4.167 16 C 0.062 3.938 17 C -0.496 4.496 18 H 0.079 0.921 19 C 0.021 3.979 20 N -0.849 5.849 21 Si 0.991 3.009 22 H -0.254 1.254 23 H -0.268 1.268 24 H -0.270 1.270 25 C -0.208 4.208 26 C -0.111 4.111 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.021 0.979 35 H 0.074 0.926 36 H 0.393 0.607 37 H 0.410 0.590 38 H 0.414 0.586 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.281 0.719 42 H 0.113 0.887 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.621 -19.660 6.207 21.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.173 4.173 3 C -0.134 4.134 4 C -0.136 4.136 5 C 0.058 3.942 6 H 0.097 0.903 7 C -0.012 4.012 8 O -0.382 6.382 9 N -0.372 5.372 10 C 0.393 3.607 11 O -0.506 6.506 12 N -0.308 5.308 13 C -0.051 4.051 14 C -0.129 4.129 15 C -0.187 4.187 16 C 0.060 3.940 17 C -0.527 4.527 18 H 0.097 0.903 19 C -0.190 4.190 20 N -0.477 5.477 21 Si 0.812 3.188 22 H -0.177 1.177 23 H -0.193 1.193 24 H -0.195 1.195 25 C -0.228 4.228 26 C -0.131 4.131 27 H 0.126 0.874 28 H 0.110 0.890 29 H 0.138 0.862 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.243 0.757 37 H 0.246 0.754 38 H 0.251 0.749 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.131 0.869 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.403 -18.798 6.353 20.850 hybrid contribution 0.620 0.645 0.150 0.907 sum -5.783 -18.153 6.503 20.131 Atomic orbital electron populations 1.24013 0.96181 1.02283 1.01412 1.23027 0.96116 0.98462 0.99677 1.20781 0.98094 0.95575 0.98919 1.21599 0.97372 0.95349 0.99318 1.21036 0.90863 0.99871 0.82471 0.90261 1.22533 0.92997 0.87530 0.98106 1.86376 1.56175 1.43629 1.52024 1.44900 1.55560 1.05739 1.30986 1.16238 0.79561 0.84437 0.80457 1.90909 1.60888 1.35548 1.63251 1.41879 1.53254 1.08066 1.27611 1.17121 0.94724 0.85059 1.08178 1.20670 0.98837 0.93139 1.00242 1.21169 0.97038 0.95925 1.04556 1.18060 0.90904 0.93606 0.91425 1.19764 1.29111 0.91449 1.12376 0.90316 1.26846 0.93723 1.04712 0.93745 1.69930 1.28380 1.31244 1.18145 0.85026 0.78732 0.75935 0.79123 1.17735 1.19306 1.19506 1.20944 0.99641 0.93216 1.08996 1.20407 0.93255 0.97849 1.01620 0.87385 0.89012 0.86173 0.92494 0.91243 0.89603 0.89307 0.96049 0.90758 0.75729 0.75396 0.74913 0.88536 0.87795 0.90866 0.86942 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.82 14.32 67.78 0.97 -1.85 16 2 C -0.15 -2.20 9.52 25.65 0.24 -1.95 16 3 C -0.10 -1.57 5.54 29.85 0.17 -1.41 16 4 C -0.10 -1.52 4.45 30.60 0.14 -1.39 16 5 C 0.16 3.60 2.37 44.99 0.11 3.70 16 6 H 0.08 2.11 7.58 -2.39 -0.02 2.10 16 7 C 0.07 1.42 6.85 71.98 0.49 1.92 16 8 O -0.57 -10.21 12.83 -148.98 -1.91 -12.12 16 9 N -0.72 -17.53 4.48 -457.82 -2.05 -19.58 16 10 C 0.69 24.65 8.36 179.05 1.50 26.15 16 11 O -0.63 -28.92 13.44 -3.98 -0.05 -28.97 16 12 N -0.66 -22.67 5.31 -316.78 -1.68 -24.35 16 13 C 0.04 1.93 6.30 38.57 0.24 2.18 16 14 C -0.11 -5.71 8.61 22.13 0.19 -5.52 16 15 C -0.17 -9.59 8.61 22.48 0.19 -9.40 16 16 C 0.06 3.51 5.55 -21.28 -0.12 3.39 16 17 C -0.50 -27.70 9.02 23.39 0.21 -27.49 16 18 H 0.08 4.16 7.85 -2.91 -0.02 4.14 16 19 C 0.02 1.10 5.42 85.23 0.46 1.56 16 20 N -0.85 -48.17 10.60 21.82 0.23 -47.93 16 21 Si 0.99 40.54 29.56 68.60 2.03 42.56 16 22 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 23 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 24 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 25 C -0.21 -10.13 9.74 22.48 0.22 -9.91 16 26 C -0.11 -4.72 9.90 22.13 0.22 -4.50 16 27 H 0.11 1.21 8.06 -2.91 -0.02 1.18 16 28 H 0.09 1.34 7.84 -2.91 -0.02 1.32 16 29 H 0.12 1.39 8.06 -2.91 -0.02 1.37 16 30 H 0.06 1.06 7.79 -2.39 -0.02 1.04 16 31 H 0.07 1.20 7.75 -2.39 -0.02 1.18 16 32 H 0.09 1.24 7.73 -2.39 -0.02 1.23 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 36 H 0.39 4.03 9.12 -74.06 -0.68 3.35 16 37 H 0.41 7.56 8.62 -92.71 -0.80 6.76 16 38 H 0.41 10.35 8.83 -92.70 -0.82 9.53 16 39 H 0.10 5.23 6.24 -2.91 -0.02 5.21 16 40 H 0.10 6.41 6.13 -2.91 -0.02 6.39 16 41 H 0.28 14.58 8.30 -92.71 -0.77 13.81 16 42 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 43 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -73.50 362.54 0.54 -72.95 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: -1.25 Total: 41.95 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 5.23 Total: -24.51 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -3.50 Total: -91.87 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -1.96 Total: -41.09 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.56 kcal Total: -73.50 0.54 -72.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454340881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.014 kcal (2) G-P(sol) polarization free energy of solvation -73.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds