Wall clock time and date at job start Tue Mar 31 2020 08:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.30999 * 119.99717 * 2 1 4 4 C 1.50691 * 120.00229 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.47504 * 124.99477 * 4 3 2 6 6 H 1.09006 * 109.47008 * 54.99818 * 5 4 3 7 7 C 1.52995 * 109.47372 * 174.99667 * 5 4 3 8 8 O 1.42898 * 109.47208 * 55.00104 * 7 5 4 9 9 N 1.46502 * 109.47237 * 295.00046 * 5 4 3 10 10 C 1.34775 * 120.00389 * 154.99615 * 9 5 4 11 11 O 1.21592 * 119.99654 * 0.02562 * 10 9 5 12 12 N 1.34772 * 120.00078 * 179.97438 * 10 9 5 13 13 C 1.39960 * 119.99973 * 174.82159 * 12 10 9 14 14 C 1.39282 * 119.94511 * 146.38004 * 13 12 10 15 15 C 1.38487 * 120.42735 * 179.97438 * 14 13 12 16 16 C 1.37681 * 120.32317 * 0.02562 * 15 14 13 17 17 C 1.40749 * 119.88136 * 0.02562 * 16 15 14 18 18 C 1.41402 * 120.21083 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00282 * 151.79069 * 18 17 16 20 20 C 1.39934 * 119.99803 * 331.79553 * 18 17 16 21 21 N 1.30830 * 120.00192 * 348.98624 * 20 18 17 22 22 Si 1.86807 * 119.99893 * 168.98983 * 20 18 17 23 23 H 1.48495 * 109.47121 * 89.99700 * 22 20 18 24 24 H 1.48496 * 109.46892 * 209.99631 * 22 20 18 25 25 H 1.48492 * 109.46961 * 329.99526 * 22 20 18 26 26 C 1.38236 * 119.94370 * 326.10341 * 13 12 10 27 27 H 1.09002 * 109.47023 * 59.99373 * 1 2 3 28 28 H 1.08999 * 109.47035 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46969 * 299.99327 * 1 2 3 30 30 H 1.07998 * 120.00011 * 180.02562 * 2 1 3 31 31 H 1.08006 * 119.99719 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47292 * 4.98987 * 4 3 2 33 33 H 1.09006 * 109.46962 * 244.99238 * 4 3 2 34 34 H 1.09006 * 109.47522 * 295.00035 * 7 5 4 35 35 H 1.08999 * 109.47225 * 174.99781 * 7 5 4 36 36 H 0.96703 * 114.00358 * 179.97438 * 8 7 5 37 37 H 0.97003 * 119.99482 * 334.99583 * 9 5 4 38 38 H 0.97002 * 119.99962 * 354.81559 * 12 10 9 39 39 H 1.08003 * 119.78694 * 359.97438 * 14 13 12 40 40 H 1.08007 * 119.84212 * 180.02562 * 15 14 13 41 41 H 1.07997 * 120.06193 * 179.97438 * 16 15 14 42 42 H 0.97000 * 120.00003 * 180.02562 * 21 20 18 43 43 H 1.07996 * 120.16066 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4395 0.0006 5 6 1.8703 3.2947 1.1823 6 1 2.9526 3.4177 1.1407 7 6 1.1981 4.6672 1.1122 8 8 -0.2198 4.5005 1.0493 9 7 1.5018 2.6339 2.4368 10 6 2.1977 2.8887 3.5625 11 8 3.1312 3.6675 3.5369 12 7 1.8584 2.2812 4.7166 13 6 2.6454 2.4611 5.8599 14 6 2.0488 2.4830 7.1183 15 6 2.8181 2.6598 8.2562 16 6 4.1823 2.8164 8.1556 17 6 4.7989 2.7975 6.8905 18 6 6.1993 2.9583 6.7791 19 1 6.7295 2.5145 5.9495 20 6 6.8982 3.6923 7.7439 21 7 6.2439 4.4067 8.6232 22 14 8.7656 3.6521 7.7764 23 1 9.2991 4.7416 6.9200 24 1 9.2405 3.8409 9.1706 25 1 9.2414 2.3419 7.2645 26 6 4.0143 2.6109 5.7387 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 2.0470 -0.9353 -0.0004 31 1 3.2420 1.1345 -0.0004 32 1 0.3403 2.2423 0.0903 33 1 1.6027 2.9716 -0.9308 34 1 1.5416 5.1952 0.2225 35 1 1.4569 5.2444 1.9998 36 1 -0.7119 5.3316 1.0031 37 1 0.7569 2.0129 2.4572 38 1 1.0686 1.7193 4.7550 39 1 0.9794 2.3614 7.2072 40 1 2.3457 2.6749 9.2273 41 1 4.7781 2.9545 9.0458 42 1 6.7284 4.9158 9.2918 43 1 4.4782 2.5899 4.7637 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455905576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:12 Heat of formation + Delta-G solvation = -47.561081 kcal Electronic energy + Delta-G solvation = -24544.520270 eV Core-core repulsion = 20975.649854 eV Total energy + Delta-G solvation = -3568.870415 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.02696 -38.11181 -36.92893 -36.08549 -34.37728 -33.90627 -32.92642 -30.59511 -29.73131 -28.00824 -27.41586 -25.45491 -25.21283 -22.38773 -20.95980 -20.61246 -20.00018 -18.76465 -17.94927 -17.46562 -17.35848 -16.35048 -15.50814 -15.18097 -15.04709 -14.75304 -14.51073 -14.24567 -14.00541 -13.73050 -13.52869 -13.08846 -12.96000 -12.76473 -12.48541 -12.18816 -12.03659 -11.87224 -11.61694 -11.25100 -11.12026 -11.04044 -10.81630 -10.58228 -10.43764 -10.14539 -10.05946 -9.67410 -9.49246 -9.15414 -9.11330 -8.82904 -8.77433 -7.33383 -6.77647 -6.58827 -4.27132 2.10731 2.81349 2.94942 3.12706 3.14408 3.18966 3.26886 3.79728 4.03421 4.21845 4.57795 4.66107 4.76254 4.88447 4.99150 5.09976 5.23537 5.32188 5.37034 5.46751 5.63855 5.68864 5.77831 5.79971 5.81196 6.09273 6.30353 6.46756 6.54342 6.66453 6.76953 6.89208 6.90443 7.12114 7.17710 7.33945 7.44851 7.48756 7.77851 7.91830 8.07992 8.18253 8.34655 8.54584 8.75121 8.99301 9.05542 9.15728 10.34085 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017072 B = 0.003330 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.738988 B = 8407.298016 C = 8739.861909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.167 4.167 3 C -0.154 4.154 4 C -0.100 4.100 5 C 0.175 3.825 6 H 0.101 0.899 7 C 0.060 3.940 8 O -0.570 6.570 9 N -0.735 5.735 10 C 0.698 3.302 11 O -0.569 6.569 12 N -0.682 5.682 13 C 0.168 3.832 14 C -0.261 4.261 15 C -0.094 4.094 16 C -0.170 4.170 17 C 0.119 3.881 18 C -0.458 4.458 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.802 5.802 22 Si 0.910 3.090 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.207 4.207 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.376 0.624 37 H 0.393 0.607 38 H 0.393 0.607 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.278 0.722 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.244 -3.783 -14.680 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.185 4.185 3 C -0.172 4.172 4 C -0.137 4.137 5 C 0.069 3.931 6 H 0.119 0.881 7 C -0.019 4.019 8 O -0.375 6.375 9 N -0.392 5.392 10 C 0.398 3.602 11 O -0.444 6.444 12 N -0.328 5.328 13 C 0.076 3.924 14 C -0.282 4.282 15 C -0.113 4.113 16 C -0.190 4.190 17 C 0.116 3.884 18 C -0.488 4.488 19 H 0.093 0.907 20 C -0.143 4.143 21 N -0.429 5.429 22 Si 0.735 3.265 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.229 4.229 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.222 0.778 37 H 0.226 0.774 38 H 0.226 0.774 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.089 0.911 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.144 -3.531 -14.526 18.066 hybrid contribution -0.035 0.228 0.093 0.249 sum -10.179 -3.303 -14.432 17.967 Atomic orbital electron populations 1.20857 0.93443 1.01911 1.01848 1.22774 0.96143 0.97859 1.01754 1.22817 0.99739 0.94144 1.00546 1.20987 1.01120 0.94133 0.97489 1.20781 0.99834 0.89908 0.82609 0.88134 1.22744 0.81024 0.97707 1.00443 1.86429 1.18177 1.35418 1.97519 1.45038 1.36675 1.49900 1.07541 1.16006 0.82642 0.81158 0.80349 1.90983 1.30647 1.38292 1.84504 1.42588 1.30037 1.51438 1.08741 1.17231 0.89962 1.01610 0.83583 1.20029 0.97197 1.19409 0.91584 1.20459 0.94568 1.00628 0.95651 1.21391 0.93142 1.06051 0.98391 1.17501 0.93120 0.87483 0.90275 1.19527 0.92342 1.29054 1.07906 0.90661 1.25869 1.00872 0.93394 0.94129 1.69810 1.37734 1.21191 1.14149 0.86287 0.82443 0.79687 0.78104 1.19585 1.20230 1.18602 1.20999 0.90767 1.12755 0.98342 0.91798 0.92422 0.91677 0.87529 0.87311 0.89540 0.89814 0.93038 0.92556 0.77783 0.77389 0.77362 0.89413 0.89101 0.86135 0.91126 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 8.65 36.01 0.31 -0.66 16 2 C -0.17 -1.55 10.26 -36.02 -0.37 -1.92 16 3 C -0.15 -1.55 9.25 -36.03 -0.33 -1.88 16 4 C -0.10 -0.95 4.72 -27.89 -0.13 -1.08 16 5 C 0.17 2.12 2.36 -67.93 -0.16 1.96 16 6 H 0.10 1.40 7.58 -51.93 -0.39 1.01 16 7 C 0.06 0.67 6.85 37.16 0.25 0.93 16 8 O -0.57 -5.69 12.83 -35.23 -0.45 -6.14 16 9 N -0.74 -10.10 4.74 -58.68 -0.28 -10.37 16 10 C 0.70 13.18 8.26 -86.92 -0.72 12.47 16 11 O -0.57 -13.40 13.72 5.28 0.07 -13.32 16 12 N -0.68 -12.78 5.35 -14.27 -0.08 -12.86 16 13 C 0.17 3.95 6.26 -83.76 -0.52 3.43 16 14 C -0.26 -5.91 9.97 -39.10 -0.39 -6.30 16 15 C -0.09 -2.25 10.02 -39.69 -0.40 -2.65 16 16 C -0.17 -4.57 8.66 -38.84 -0.34 -4.91 16 17 C 0.12 3.36 5.55 -106.85 -0.59 2.77 16 18 C -0.46 -12.89 9.06 -37.74 -0.34 -13.23 16 19 H 0.08 2.06 7.87 -52.49 -0.41 1.65 16 20 C 0.07 1.94 5.25 -17.34 -0.09 1.85 16 21 N -0.80 -21.70 10.81 55.55 0.60 -21.09 16 22 Si 0.91 19.62 29.57 -169.99 -5.03 14.59 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 26 C -0.21 -5.53 8.39 -38.69 -0.32 -5.85 16 27 H 0.06 0.47 7.85 -51.93 -0.41 0.06 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 30 H 0.11 0.95 8.06 -52.49 -0.42 0.52 16 31 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.09 0.81 5.38 -51.93 -0.28 0.53 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.38 2.30 9.12 45.56 0.42 2.72 16 37 H 0.39 4.53 8.62 -40.82 -0.35 4.17 16 38 H 0.39 5.80 8.83 -40.82 -0.36 5.44 16 39 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 40 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 41 H 0.12 3.32 6.18 -52.49 -0.32 3.00 16 42 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 43 H 0.11 2.97 6.44 -52.49 -0.34 2.63 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -33.03 360.48 -9.24 -42.27 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -5.37 Total: 16.58 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -4.15 Total: -15.08 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.25 Total: -44.33 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.38 Total: -19.46 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.03 -9.24 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455905576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.287 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds