Wall clock time and date at job start Tue Mar 31 2020 08:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.30999 * 119.99717 * 2 1 4 4 C 1.50691 * 120.00229 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.47504 * 124.99477 * 4 3 2 6 6 H 1.09006 * 109.47008 * 54.99818 * 5 4 3 7 7 C 1.52995 * 109.47372 * 174.99667 * 5 4 3 8 8 O 1.42898 * 109.47208 * 55.00104 * 7 5 4 9 9 N 1.46502 * 109.47237 * 295.00046 * 5 4 3 10 10 C 1.34775 * 120.00389 * 154.99615 * 9 5 4 11 11 O 1.21592 * 119.99654 * 0.02562 * 10 9 5 12 12 N 1.34772 * 120.00078 * 179.97438 * 10 9 5 13 13 C 1.39960 * 119.99973 * 174.82159 * 12 10 9 14 14 C 1.39282 * 119.94511 * 146.38004 * 13 12 10 15 15 C 1.38487 * 120.42735 * 179.97438 * 14 13 12 16 16 C 1.37681 * 120.32317 * 0.02562 * 15 14 13 17 17 C 1.40749 * 119.88136 * 0.02562 * 16 15 14 18 18 C 1.41402 * 120.21083 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00282 * 151.79069 * 18 17 16 20 20 C 1.39934 * 119.99803 * 331.79553 * 18 17 16 21 21 N 1.30830 * 120.00192 * 348.98624 * 20 18 17 22 22 Si 1.86807 * 119.99893 * 168.98983 * 20 18 17 23 23 H 1.48495 * 109.47121 * 89.99700 * 22 20 18 24 24 H 1.48496 * 109.46892 * 209.99631 * 22 20 18 25 25 H 1.48492 * 109.46961 * 329.99526 * 22 20 18 26 26 C 1.38236 * 119.94370 * 326.10341 * 13 12 10 27 27 H 1.09002 * 109.47023 * 59.99373 * 1 2 3 28 28 H 1.08999 * 109.47035 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46969 * 299.99327 * 1 2 3 30 30 H 1.07998 * 120.00011 * 180.02562 * 2 1 3 31 31 H 1.08006 * 119.99719 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47292 * 4.98987 * 4 3 2 33 33 H 1.09006 * 109.46962 * 244.99238 * 4 3 2 34 34 H 1.09006 * 109.47522 * 295.00035 * 7 5 4 35 35 H 1.08999 * 109.47225 * 174.99781 * 7 5 4 36 36 H 0.96703 * 114.00358 * 179.97438 * 8 7 5 37 37 H 0.97003 * 119.99482 * 334.99583 * 9 5 4 38 38 H 0.97002 * 119.99962 * 354.81559 * 12 10 9 39 39 H 1.08003 * 119.78694 * 359.97438 * 14 13 12 40 40 H 1.08007 * 119.84212 * 180.02562 * 15 14 13 41 41 H 1.07997 * 120.06193 * 179.97438 * 16 15 14 42 42 H 0.97000 * 120.00003 * 180.02562 * 21 20 18 43 43 H 1.07996 * 120.16066 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4395 0.0006 5 6 1.8703 3.2947 1.1823 6 1 2.9526 3.4177 1.1407 7 6 1.1981 4.6672 1.1122 8 8 -0.2198 4.5005 1.0493 9 7 1.5018 2.6339 2.4368 10 6 2.1977 2.8887 3.5625 11 8 3.1312 3.6675 3.5369 12 7 1.8584 2.2812 4.7166 13 6 2.6454 2.4611 5.8599 14 6 2.0488 2.4830 7.1183 15 6 2.8181 2.6598 8.2562 16 6 4.1823 2.8164 8.1556 17 6 4.7989 2.7975 6.8905 18 6 6.1993 2.9583 6.7791 19 1 6.7295 2.5145 5.9495 20 6 6.8982 3.6923 7.7439 21 7 6.2439 4.4067 8.6232 22 14 8.7656 3.6521 7.7764 23 1 9.2991 4.7416 6.9200 24 1 9.2405 3.8409 9.1706 25 1 9.2414 2.3419 7.2645 26 6 4.0143 2.6109 5.7387 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 2.0470 -0.9353 -0.0004 31 1 3.2420 1.1345 -0.0004 32 1 0.3403 2.2423 0.0903 33 1 1.6027 2.9716 -0.9308 34 1 1.5416 5.1952 0.2225 35 1 1.4569 5.2444 1.9998 36 1 -0.7119 5.3316 1.0031 37 1 0.7569 2.0129 2.4572 38 1 1.0686 1.7193 4.7550 39 1 0.9794 2.3614 7.2072 40 1 2.3457 2.6749 9.2273 41 1 4.7781 2.9545 9.0458 42 1 6.7284 4.9158 9.2918 43 1 4.4782 2.5899 4.7637 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455905576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:11 Heat of formation + Delta-G solvation = -71.084710 kcal Electronic energy + Delta-G solvation = -24545.540331 eV Core-core repulsion = 20975.649854 eV Total energy + Delta-G solvation = -3569.890476 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.51784 -39.50912 -38.42158 -36.86639 -36.15069 -35.13442 -34.72020 -31.73661 -31.71172 -29.50290 -28.45040 -27.22832 -26.22546 -23.90205 -22.77735 -22.04952 -21.53981 -19.78101 -19.52633 -18.98120 -18.28200 -17.58123 -17.24473 -16.59464 -16.46654 -16.31195 -15.87285 -15.66242 -15.17139 -14.89526 -14.75987 -14.61912 -14.30433 -13.99268 -13.72648 -13.61157 -13.26218 -13.09977 -13.03899 -12.81796 -12.54927 -12.53104 -12.20650 -12.02491 -11.96050 -11.57450 -11.56809 -11.29385 -11.06442 -10.93014 -10.68409 -10.10522 -9.81502 -9.34008 -8.65909 -8.54696 -6.36781 0.95112 1.04560 1.34547 1.36194 1.48374 1.52172 1.71715 2.20494 2.24248 2.78415 3.30297 3.40595 3.75719 3.78237 4.01814 4.21965 4.33195 4.41691 4.48308 4.53495 4.56585 4.64914 4.75216 4.83994 4.88216 4.96295 5.07800 5.12902 5.15049 5.17869 5.21481 5.31638 5.35477 5.55789 5.73893 5.81385 5.85748 5.97656 6.08073 6.14164 6.22050 6.39894 6.71532 6.86645 6.96830 7.02953 7.13209 7.63994 8.39075 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017072 B = 0.003330 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.738988 B = 8407.298016 C = 8739.861909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.162 4.162 3 C -0.174 4.174 4 C -0.084 4.084 5 C 0.167 3.833 6 H 0.076 0.924 7 C 0.069 3.931 8 O -0.574 6.574 9 N -0.711 5.711 10 C 0.695 3.305 11 O -0.619 6.619 12 N -0.671 5.671 13 C 0.176 3.824 14 C -0.249 4.249 15 C -0.092 4.092 16 C -0.195 4.195 17 C 0.089 3.911 18 C -0.502 4.502 19 H 0.064 0.936 20 C 0.032 3.968 21 N -0.832 5.832 22 Si 0.985 3.015 23 H -0.266 1.266 24 H -0.260 1.260 25 H -0.260 1.260 26 C -0.233 4.233 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.023 0.977 36 H 0.394 0.606 37 H 0.408 0.592 38 H 0.416 0.584 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.106 0.894 42 H 0.287 0.713 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.370 -4.292 -15.384 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.180 4.180 3 C -0.192 4.192 4 C -0.122 4.122 5 C 0.062 3.938 6 H 0.094 0.906 7 C -0.011 4.011 8 O -0.381 6.381 9 N -0.367 5.367 10 C 0.395 3.605 11 O -0.499 6.499 12 N -0.319 5.319 13 C 0.082 3.918 14 C -0.270 4.270 15 C -0.111 4.111 16 C -0.215 4.215 17 C 0.086 3.914 18 C -0.533 4.533 19 H 0.082 0.918 20 C -0.181 4.181 21 N -0.459 5.459 22 Si 0.805 3.195 23 H -0.191 1.191 24 H -0.184 1.184 25 H -0.184 1.184 26 C -0.255 4.255 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.244 0.756 37 H 0.244 0.756 38 H 0.253 0.747 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.124 0.876 42 H 0.097 0.903 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.365 -4.068 -15.273 20.067 hybrid contribution 0.434 0.353 0.218 0.601 sum -11.931 -3.714 -15.055 19.565 Atomic orbital electron populations 1.20898 0.92019 1.02814 1.02362 1.22979 0.97270 0.97574 1.00186 1.22819 0.99322 0.94866 1.02198 1.20892 1.01249 0.93355 0.96657 1.20969 0.98912 0.91269 0.82659 0.90555 1.22523 0.81936 0.96471 1.00124 1.86373 1.17271 1.37057 1.97438 1.44870 1.35981 1.49365 1.06489 1.16214 0.82358 0.80655 0.81242 1.90961 1.33012 1.40590 1.85314 1.42351 1.30219 1.51746 1.07626 1.17293 0.89262 0.99692 0.85598 1.20450 0.99174 1.16941 0.90465 1.20837 0.93504 0.98917 0.97794 1.21355 0.94636 1.08207 0.97314 1.17836 0.93768 0.88406 0.91379 1.19748 0.93191 1.31210 1.09124 0.91775 1.26730 1.05995 0.92221 0.93151 1.69860 1.39853 1.21510 1.14685 0.85173 0.75722 0.79661 0.78894 1.19125 1.18363 1.18351 1.20938 0.92560 1.15038 0.96962 0.90887 0.91460 0.91383 0.87469 0.88652 0.88562 0.88096 0.90461 0.95878 0.75615 0.75604 0.74668 0.85125 0.85831 0.87587 0.90251 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 8.65 71.24 0.62 -0.98 16 2 C -0.16 -2.73 10.26 25.65 0.26 -2.47 16 3 C -0.17 -3.31 9.25 25.64 0.24 -3.07 16 4 C -0.08 -1.43 4.72 29.85 0.14 -1.29 16 5 C 0.17 3.95 2.36 44.99 0.11 4.06 16 6 H 0.08 2.21 7.58 -2.38 -0.02 2.19 16 7 C 0.07 1.46 6.85 71.98 0.49 1.95 16 8 O -0.57 -9.94 12.83 -148.98 -1.91 -11.85 16 9 N -0.71 -18.85 4.74 -457.81 -2.17 -21.03 16 10 C 0.69 26.34 8.26 179.06 1.48 27.82 16 11 O -0.62 -30.42 13.72 -4.00 -0.05 -30.48 16 12 N -0.67 -24.45 5.35 -317.33 -1.70 -26.14 16 13 C 0.18 8.19 6.26 38.09 0.24 8.43 16 14 C -0.25 -10.75 9.97 22.58 0.23 -10.53 16 15 C -0.09 -4.29 10.02 22.20 0.22 -4.07 16 16 C -0.20 -10.77 8.66 22.75 0.20 -10.57 16 17 C 0.09 5.25 5.55 -21.31 -0.12 5.13 16 18 C -0.50 -29.90 9.06 23.46 0.21 -29.69 16 19 H 0.06 3.77 7.87 -2.91 -0.02 3.75 16 20 C 0.03 1.76 5.25 85.25 0.45 2.20 16 21 N -0.83 -46.30 10.81 21.82 0.24 -46.06 16 22 Si 0.99 41.25 29.57 68.60 2.03 43.28 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 26 C -0.23 -13.00 8.39 22.85 0.19 -12.81 16 27 H 0.07 0.83 7.85 -2.39 -0.02 0.81 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 30 H 0.11 1.77 8.06 -2.91 -0.02 1.75 16 31 H 0.10 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.10 1.49 5.38 -2.39 -0.01 1.48 16 33 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.39 3.75 9.12 -74.06 -0.68 3.07 16 37 H 0.41 8.46 8.62 -92.71 -0.80 7.66 16 38 H 0.42 11.15 8.83 -92.71 -0.82 10.33 16 39 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 40 H 0.12 4.90 8.06 -2.91 -0.02 4.87 16 41 H 0.11 6.06 6.18 -2.91 -0.02 6.05 16 42 H 0.29 14.34 8.30 -92.71 -0.77 13.58 16 43 H 0.08 4.98 6.44 -2.91 -0.02 4.96 16 Total: -1.00 -75.92 360.48 0.14 -75.78 By element: Atomic # 1 Polarization: 43.63 SS G_CDS: -1.24 Total: 42.39 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 4.95 Total: -25.88 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -3.63 Total: -93.23 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -1.97 Total: -42.33 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -75.92 0.14 -75.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455905576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.694 kcal (2) G-P(sol) polarization free energy of solvation -75.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds