Wall clock time and date at job start Tue Mar 31 2020 09:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 119.99930 * 2 1 4 4 O 1.42898 * 109.47392 * 135.00219 * 3 2 1 5 5 C 1.35644 * 117.00188 * 180.02562 * 4 3 2 6 6 C 1.39337 * 120.54450 * 0.26566 * 5 4 3 7 7 C 1.38301 * 118.44111 * 180.28706 * 6 5 4 8 8 C 1.38765 * 119.44780 * 359.73272 * 7 6 5 9 9 N 1.31378 * 121.06168 * 359.97438 * 8 7 6 10 10 C 1.32855 * 121.69799 * 0.02562 * 9 8 7 11 11 C 1.47836 * 119.78059 * 179.97438 * 10 9 8 12 12 O 1.21559 * 119.99616 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00044 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47237 * 179.72043 * 14 13 11 16 16 C 1.52993 * 109.47254 * 300.00146 * 15 14 13 17 17 C 1.53008 * 109.47007 * 59.99821 * 15 14 13 18 18 C 1.50696 * 109.46969 * 179.97438 * 15 14 13 19 19 H 1.07997 * 120.00408 * 0.02562 * 18 15 14 20 20 C 1.37885 * 119.99883 * 180.02562 * 18 15 14 21 21 N 1.31508 * 119.99834 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99926 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47112 * 89.99781 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00049 * 22 20 18 25 25 H 1.48494 * 109.47201 * 330.00023 * 22 20 18 26 26 H 1.08001 * 120.00026 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00081 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00026 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47412 * 14.99858 * 3 2 1 30 30 H 1.09006 * 109.47504 * 255.00138 * 3 2 1 31 31 H 1.08001 * 120.77992 * 0.02562 * 6 5 4 32 32 H 1.08003 * 120.27828 * 179.70864 * 7 6 5 33 33 H 1.07995 * 119.47044 * 180.02562 * 8 7 6 34 34 H 0.97005 * 120.00161 * 359.71828 * 13 11 10 35 35 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 36 36 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 37 37 H 1.09002 * 109.47712 * 59.99463 * 16 15 14 38 38 H 1.08995 * 109.47426 * 180.02562 * 16 15 14 39 39 H 1.09002 * 109.47145 * 299.99770 * 16 15 14 40 40 H 1.09004 * 109.46786 * 59.99901 * 17 15 14 41 41 H 1.08995 * 109.46766 * 180.02562 * 17 15 14 42 42 H 1.09002 * 109.47164 * 300.00057 * 17 15 14 43 43 H 0.96999 * 119.99905 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9075 2.3433 1.0786 6 6 3.6617 3.4774 0.3074 7 6 4.4886 4.5744 0.4668 8 6 5.5270 4.5181 1.3857 9 7 5.7365 3.4400 2.1066 10 6 4.9694 2.3617 1.9891 11 6 5.2439 1.1710 2.8213 12 8 4.5448 0.1821 2.7167 13 7 6.2692 1.1821 3.6960 14 6 6.5408 0.0023 4.5211 15 6 7.7524 0.2733 5.4153 16 6 8.9720 0.5775 4.5432 17 6 7.4605 1.4723 6.3199 18 6 8.0314 -0.9399 6.2644 19 1 7.4073 -1.8168 6.1750 20 6 9.0835 -0.9305 7.1556 21 7 9.8431 0.1374 7.2649 22 14 9.4297 -2.4347 8.2077 23 1 10.3690 -3.3344 7.4911 24 1 10.0362 -2.0096 9.4948 25 1 8.1592 -3.1560 8.4735 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4755 1.4868 -0.9927 31 1 2.8471 3.4978 -0.4015 32 1 4.3279 5.4673 -0.1191 33 1 6.1727 5.3747 1.5108 34 1 6.8296 1.9697 3.7765 35 1 5.6718 -0.2143 5.1424 36 1 6.7486 -0.8518 3.8766 37 1 8.7700 1.4552 3.9292 38 1 9.8353 0.7702 5.1801 39 1 9.1800 -0.2766 3.8987 40 1 6.5915 1.2556 6.9413 41 1 8.3238 1.6657 6.9566 42 1 7.2584 2.3501 5.7060 43 1 10.5830 0.1441 7.8921 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457991488.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:30 Heat of formation + Delta-G solvation = -16.905786 kcal Electronic energy + Delta-G solvation = -24629.961381 eV Core-core repulsion = 21062.420279 eV Total energy + Delta-G solvation = -3567.541102 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95859 -38.82227 -38.33809 -36.20271 -34.39343 -33.22767 -32.42256 -30.86841 -30.42887 -27.00755 -25.89720 -25.60926 -25.15992 -23.86311 -22.96590 -20.69861 -20.03670 -18.74569 -18.39994 -17.65350 -17.12075 -16.35587 -15.80733 -15.31961 -15.26578 -14.80485 -14.59655 -14.55799 -14.28851 -13.76872 -13.33023 -13.20973 -12.99922 -12.81033 -12.52782 -12.21167 -12.05532 -11.78008 -11.29634 -11.27751 -11.10279 -10.79031 -10.63116 -10.28458 -10.15188 -10.05436 -10.00262 -9.81164 -9.52421 -9.45805 -9.13619 -8.69272 -8.60768 -8.34284 -8.13941 -5.94578 -4.04492 0.61505 1.06971 1.76924 3.04609 3.05938 3.33216 3.39829 3.43797 3.65770 3.96838 4.27813 4.35061 4.45025 4.56240 4.58523 4.72464 4.86326 4.87836 5.02898 5.11955 5.31874 5.42921 5.53752 5.74552 5.75709 6.16132 6.25459 6.32324 6.34732 6.42882 6.62912 6.88017 6.97418 7.05184 7.08266 7.13193 7.16888 7.46127 7.66409 7.67472 7.77366 8.10782 8.20023 8.29589 8.47251 8.82559 8.96581 9.60755 11.06797 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018882 B = 0.003326 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.499320 B = 8415.821134 C = 9676.980307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.148 4.148 3 C 0.078 3.922 4 O -0.264 6.264 5 C 0.134 3.866 6 C -0.179 4.179 7 C -0.113 4.113 8 C 0.057 3.943 9 N -0.418 5.418 10 C 0.055 3.945 11 C 0.557 3.443 12 O -0.528 6.528 13 N -0.697 5.697 14 C 0.131 3.869 15 C 0.057 3.943 16 C -0.131 4.131 17 C -0.131 4.131 18 C -0.505 4.505 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.124 0.876 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.165 0.835 34 H 0.407 0.593 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.009 0.991 38 H 0.085 0.915 39 H 0.025 0.975 40 H 0.026 0.974 41 H 0.085 0.915 42 H 0.009 0.991 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.567 9.674 -16.227 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.166 4.166 3 C 0.003 3.997 4 O -0.174 6.174 5 C 0.084 3.916 6 C -0.206 4.206 7 C -0.133 4.133 8 C -0.103 4.103 9 N -0.129 5.129 10 C -0.085 4.085 11 C 0.341 3.659 12 O -0.404 6.404 13 N -0.348 5.348 14 C 0.009 3.991 15 C 0.056 3.944 16 C -0.189 4.189 17 C -0.189 4.189 18 C -0.544 4.544 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.721 3.279 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.142 0.858 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.182 0.818 34 H 0.244 0.756 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.104 0.896 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.104 0.896 42 H 0.028 0.972 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.217 8.738 -15.447 22.128 hybrid contribution -0.306 -0.090 -0.252 0.406 sum -13.523 8.648 -15.699 22.452 Atomic orbital electron populations 1.23842 0.95329 1.02460 0.99558 1.22647 0.95591 0.97876 1.00502 1.21968 0.88204 0.97326 0.92238 1.86479 1.40679 1.33314 1.56915 1.20033 0.90957 0.86873 0.93785 1.21712 1.02951 0.93504 1.02390 1.22164 0.94678 0.98513 0.97992 1.22730 0.97441 0.96347 0.93830 1.67695 1.24721 0.98888 1.21611 1.21016 0.93746 0.95145 0.98568 1.17641 0.81927 0.85752 0.80604 1.90802 1.48761 1.32969 1.67897 1.46166 1.30496 1.19534 1.38598 1.21768 0.99515 0.85513 0.92329 1.18346 0.89234 0.95258 0.91577 1.21828 1.02271 0.96642 0.98181 1.21830 1.01652 0.95699 0.99730 1.21004 1.13521 0.99171 1.20661 0.92436 1.24879 0.95850 0.96003 0.96796 1.69814 1.18325 1.27659 1.36634 0.86580 0.78463 0.83128 0.79741 1.20760 1.21321 1.19919 0.88423 0.87360 0.85830 0.91488 0.90996 0.83921 0.84123 0.81823 0.75593 0.92606 0.92611 0.97211 0.89634 0.95534 0.95522 0.89625 0.97221 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 14.31 29.02 0.42 -0.94 16 2 C -0.15 -1.45 9.89 -36.03 -0.36 -1.80 16 3 C 0.08 0.77 5.17 36.00 0.19 0.95 16 4 O -0.26 -3.93 8.18 -40.58 -0.33 -4.26 16 5 C 0.13 1.91 6.71 -38.56 -0.26 1.65 16 6 C -0.18 -1.78 9.13 -39.15 -0.36 -2.13 16 7 C -0.11 -0.98 10.10 -39.36 -0.40 -1.37 16 8 C 0.06 0.61 11.17 -17.55 -0.20 0.42 16 9 N -0.42 -6.22 9.54 -9.71 -0.09 -6.31 16 10 C 0.05 0.92 6.76 -82.88 -0.56 0.36 16 11 C 0.56 11.23 7.80 -12.34 -0.10 11.14 16 12 O -0.53 -11.97 15.14 -16.64 -0.25 -12.22 16 13 N -0.70 -14.20 4.95 -61.25 -0.30 -14.50 16 14 C 0.13 2.98 4.50 -4.04 -0.02 2.96 16 15 C 0.06 1.38 0.50 -155.66 -0.08 1.30 16 16 C -0.13 -3.13 8.08 37.15 0.30 -2.83 16 17 C -0.13 -3.13 8.08 37.16 0.30 -2.83 16 18 C -0.50 -13.65 8.01 -34.44 -0.28 -13.93 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 20 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 21 N -0.89 -24.21 9.35 55.43 0.52 -23.70 16 22 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.10 0.61 7.90 -52.49 -0.41 0.20 16 27 H 0.11 0.71 8.06 -52.49 -0.42 0.29 16 28 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.07 0.53 7.40 -51.93 -0.38 0.14 16 30 H 0.07 0.56 7.71 -51.93 -0.40 0.16 16 31 H 0.14 0.95 6.46 -52.49 -0.34 0.62 16 32 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 33 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.41 7.94 5.49 -40.82 -0.22 7.72 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.01 0.19 6.86 -51.93 -0.36 -0.16 16 38 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 42 H 0.01 0.19 6.86 -51.93 -0.36 -0.16 16 43 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -31.56 355.06 -7.65 -39.21 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.03 Total: 5.66 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.49 Total: -5.38 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.12 Total: -44.51 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.58 Total: -16.48 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.56 -7.65 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457991488.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.304 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds