Wall clock time and date at job start Tue Mar 31 2020 09:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47586 * 2 1 4 4 C 1.50704 * 109.46978 * 239.99785 * 2 1 3 5 5 H 1.08001 * 120.00005 * 241.35097 * 4 2 1 6 6 C 1.37869 * 120.00155 * 61.34845 * 4 2 1 7 7 N 1.31511 * 120.00309 * 193.97598 * 6 4 2 8 8 Si 1.86799 * 119.99845 * 13.97762 * 6 4 2 9 9 H 1.48504 * 109.47349 * 84.54915 * 8 6 4 10 10 H 1.48500 * 109.47227 * 204.54700 * 8 6 4 11 11 H 1.48496 * 109.47179 * 324.54775 * 8 6 4 12 12 C 1.53006 * 109.46847 * 120.00062 * 2 1 3 13 13 N 1.46503 * 109.46839 * 299.99624 * 12 2 1 14 14 C 1.34770 * 119.99499 * 179.72356 * 13 12 2 15 15 O 1.21553 * 120.00550 * 0.28048 * 14 13 12 16 16 C 1.47930 * 119.99873 * 180.27526 * 14 13 12 17 17 C 1.39468 * 119.71309 * 180.02562 * 16 14 13 18 18 C 1.38411 * 119.06265 * 179.97438 * 17 16 14 19 19 C 1.38694 * 118.72271 * 359.82952 * 18 17 16 20 20 C 1.39549 * 119.04588 * 0.23628 * 19 18 17 21 21 N 1.31297 * 120.84225 * 359.59438 * 20 19 18 22 22 O 1.35521 * 121.72314 * 180.46483 * 19 18 17 23 23 C 1.42884 * 117.73302 * 342.44727 * 22 19 18 24 24 C 1.53397 * 108.51395 * 49.38330 * 23 22 19 25 25 C 1.50497 * 119.62772 * 179.59712 * 18 17 16 26 26 H 1.08998 * 109.46938 * 309.37287 * 1 2 3 27 27 H 1.08999 * 109.46958 * 69.36957 * 1 2 3 28 28 H 1.08999 * 109.47477 * 189.36813 * 1 2 3 29 29 H 1.08994 * 109.47508 * 180.02562 * 3 2 1 30 30 H 1.09010 * 109.47052 * 299.99814 * 3 2 1 31 31 H 1.09001 * 109.47059 * 59.99430 * 3 2 1 32 32 H 0.97006 * 120.00387 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47025 * 179.97438 * 12 2 1 34 34 H 1.09006 * 109.46912 * 59.99710 * 12 2 1 35 35 H 0.96996 * 120.00254 * 0.02562 * 13 12 2 36 36 H 1.07995 * 120.47025 * 0.02562 * 17 16 14 37 37 H 1.07995 * 119.57651 * 179.84714 * 20 19 18 38 38 H 1.08990 * 109.63734 * 169.09917 * 23 22 19 39 39 H 1.09002 * 109.62792 * 289.48925 * 23 22 19 40 40 H 1.09006 * 109.67945 * 55.07694 * 24 23 22 41 41 H 1.08996 * 109.68443 * 175.59455 * 24 23 22 42 42 H 1.08996 * 109.45560 * 282.58000 * 25 18 17 43 43 H 1.08997 * 109.45699 * 42.52933 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6351 -1.6011 -1.1315 6 6 1.7223 -0.2235 -2.4825 7 7 1.9157 -0.9727 -3.5459 8 14 1.0277 1.5005 -2.6684 9 1 2.1418 2.4815 -2.7084 10 1 0.2471 1.5864 -3.9288 11 1 0.1419 1.8042 -1.5159 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8726 -0.4943 3.6695 15 8 2.5714 -1.4826 3.7811 16 6 1.3745 0.1995 4.8773 17 6 1.7107 -0.2852 6.1411 18 6 1.2378 0.3748 7.2620 19 6 0.4466 1.5006 7.0884 20 6 0.1499 1.9270 5.7932 21 7 0.6158 1.2819 4.7488 22 8 -0.0411 2.1984 8.1429 23 6 -0.0519 1.5546 9.4184 24 6 1.3362 0.9533 9.6724 25 6 1.5853 -0.1426 8.6319 26 1 -0.3633 0.6519 0.7944 27 1 -0.3633 0.3621 -0.9618 28 1 -0.3634 -1.0139 0.1673 29 1 3.1300 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6980 -0.6300 -4.4269 33 1 3.1299 -0.7217 1.2491 34 1 1.6765 -1.7490 1.2493 35 1 0.9937 0.7579 2.3564 36 1 2.3320 -1.1626 6.2436 37 1 -0.4675 2.8011 5.6481 38 1 -0.2828 2.2839 10.1948 39 1 -0.8028 0.7644 9.4234 40 1 2.0955 1.7296 9.5771 41 1 1.3731 0.5248 10.6739 42 1 0.9644 -1.0086 8.8612 43 1 2.6356 -0.4329 8.6547 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457998037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:58 Heat of formation + Delta-G solvation = -32.216545 kcal Electronic energy + Delta-G solvation = -24674.339309 eV Core-core repulsion = 21106.134283 eV Total energy + Delta-G solvation = -3568.205026 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.44148 -39.62631 -38.23235 -36.63623 -35.06578 -33.33276 -32.06217 -31.44702 -30.89338 -26.82050 -26.33195 -26.12407 -25.09500 -24.45688 -23.47804 -21.72511 -19.89189 -19.14426 -18.16031 -18.04964 -17.10337 -16.11814 -15.96955 -15.71780 -15.12769 -15.04530 -14.90278 -14.76630 -14.42258 -14.03781 -13.77033 -13.74427 -13.18762 -12.99392 -12.86507 -12.53131 -12.51123 -12.15425 -11.98720 -11.95835 -11.44754 -11.24372 -11.19486 -10.39996 -10.31824 -10.11530 -10.11059 -10.00581 -9.77601 -9.56966 -9.07011 -8.76262 -8.63332 -8.46348 -8.37841 -6.11032 -4.08115 0.56331 0.90095 2.69209 2.88190 3.29086 3.36906 3.42808 3.49803 3.80544 4.02948 4.09002 4.15920 4.31868 4.35797 4.40085 4.65640 4.80744 4.91381 4.98462 5.05178 5.19030 5.20282 5.34902 5.46583 5.54818 5.64441 5.79002 5.85724 6.03918 6.10030 6.13576 6.44753 6.52808 6.60100 6.67656 6.75756 6.81763 6.84878 7.01924 7.26350 7.48012 7.54833 7.76453 8.01259 8.47386 8.57638 8.94081 9.53237 11.01995 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.033309 B = 0.002988 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.401577 B = 9369.354135 C = 9968.353011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.029 3.971 3 C -0.149 4.149 4 C -0.512 4.512 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.892 5.892 8 Si 0.885 3.115 9 H -0.286 1.286 10 H -0.306 1.306 11 H -0.248 1.248 12 C 0.139 3.861 13 N -0.699 5.699 14 C 0.564 3.436 15 O -0.545 6.545 16 C 0.051 3.949 17 C -0.075 4.075 18 C -0.131 4.131 19 C 0.097 3.903 20 C 0.081 3.919 21 N -0.425 5.425 22 O -0.306 6.306 23 C 0.058 3.942 24 C -0.160 4.160 25 C -0.081 4.081 26 H 0.024 0.976 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.407 0.593 36 H 0.151 0.849 37 H 0.170 0.830 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.502 6.383 27.636 28.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 C -0.206 4.206 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.529 5.529 8 Si 0.717 3.283 9 H -0.214 1.214 10 H -0.235 1.235 11 H -0.174 1.174 12 C 0.017 3.983 13 N -0.349 5.349 14 C 0.348 3.652 15 O -0.423 6.423 16 C -0.087 4.087 17 C -0.095 4.095 18 C -0.139 4.139 19 C 0.049 3.951 20 C -0.081 4.081 21 N -0.137 5.137 22 O -0.218 6.218 23 C -0.017 4.017 24 C -0.198 4.198 25 C -0.117 4.117 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.244 0.756 36 H 0.169 0.831 37 H 0.187 0.813 38 H 0.129 0.871 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.257 6.095 26.626 27.644 hybrid contribution -0.293 0.886 0.630 1.126 sum -4.550 6.981 27.256 28.501 Atomic orbital electron populations 1.22299 0.97765 0.99906 1.00087 1.18720 0.92611 0.92310 0.93616 1.22363 1.01148 0.98301 0.98758 1.20717 1.34019 1.12284 0.87986 0.90523 1.24961 0.94656 0.97315 0.95771 1.69952 1.48309 1.35921 0.98704 0.87303 0.79412 0.85561 0.76004 1.21356 1.23460 1.17360 1.21607 0.98755 0.95915 0.82024 1.46188 1.51657 1.31605 1.05472 1.17720 0.80799 0.83809 0.82895 1.90771 1.38805 1.26120 1.86586 1.21244 0.99082 0.94241 0.94090 1.21885 0.97510 0.99627 0.90522 1.20088 0.99869 0.97023 0.96958 1.20004 0.93782 0.92155 0.89150 1.22416 1.00262 1.00890 0.84566 1.67575 1.07343 1.05858 1.32894 1.85968 1.78499 1.41313 1.15993 1.23076 0.97170 0.98512 0.82983 1.22262 0.97928 0.99406 1.00202 1.20495 1.03419 0.98312 0.89521 0.95661 0.92513 0.93440 0.92818 0.94035 0.94888 0.92591 0.91709 0.91616 0.75586 0.83103 0.81285 0.87059 0.91385 0.90140 0.89221 0.89582 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 7.53 37.16 0.28 -2.77 16 2 C 0.03 0.65 0.50 -155.66 -0.08 0.57 16 3 C -0.15 -3.16 7.52 37.15 0.28 -2.88 16 4 C -0.51 -13.99 8.62 -34.44 -0.30 -14.28 16 5 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 6 C 0.08 2.13 5.32 -17.82 -0.09 2.03 16 7 N -0.89 -26.98 13.96 55.43 0.77 -26.20 16 8 Si 0.88 21.52 22.79 -169.99 -3.87 17.64 16 9 H -0.29 -6.93 7.10 56.52 0.40 -6.53 16 10 H -0.31 -7.59 7.11 56.52 0.40 -7.19 16 11 H -0.25 -5.53 4.65 56.52 0.26 -5.26 16 12 C 0.14 2.90 4.49 -4.04 -0.02 2.89 16 13 N -0.70 -12.75 4.99 -61.22 -0.31 -13.06 16 14 C 0.56 10.14 7.80 -12.29 -0.10 10.04 16 15 O -0.54 -11.14 16.32 5.32 0.09 -11.05 16 16 C 0.05 0.76 6.75 -83.02 -0.56 0.20 16 17 C -0.07 -0.93 9.30 -39.06 -0.36 -1.29 16 18 C -0.13 -1.33 5.75 -104.49 -0.60 -1.93 16 19 C 0.10 1.02 6.50 -38.92 -0.25 0.77 16 20 C 0.08 0.93 11.12 -17.29 -0.19 0.74 16 21 N -0.42 -5.94 9.52 -9.61 -0.09 -6.04 16 22 O -0.31 -2.72 10.29 -18.26 -0.19 -2.91 16 23 C 0.06 0.31 7.01 37.36 0.26 0.57 16 24 C -0.16 -0.78 6.20 -26.45 -0.16 -0.95 16 25 C -0.08 -0.53 5.90 -27.90 -0.16 -0.69 16 26 H 0.02 0.46 7.13 -51.93 -0.37 0.09 16 27 H 0.06 1.27 4.30 -51.93 -0.22 1.05 16 28 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.04 0.92 2.25 -51.92 -0.12 0.81 16 31 H 0.03 0.60 6.86 -51.93 -0.36 0.24 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.41 6.99 5.58 -40.82 -0.23 6.76 16 36 H 0.15 1.78 7.64 -52.49 -0.40 1.38 16 37 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 336.57 15.07 5.07 5.07 Total: -1.00 -32.30 336.57 -6.63 -38.93 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.04 Total: 4.60 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -2.06 Total: -6.98 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.38 Total: -45.30 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.10 Total: -13.97 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -3.87 Total: 17.64 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.30 -6.63 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457998037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.711 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds