Wall clock time and date at job start Tue Mar 31 2020 09:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47103 * 2 1 4 4 C 1.50699 * 109.47257 * 240.00062 * 2 1 3 5 5 H 1.07994 * 119.99788 * 237.00615 * 4 2 1 6 6 C 1.37881 * 119.99957 * 57.00306 * 4 2 1 7 7 N 1.31513 * 119.99997 * 5.54471 * 6 4 2 8 8 Si 1.86802 * 119.99799 * 185.54323 * 6 4 2 9 9 H 1.48500 * 109.46675 * 85.00297 * 8 6 4 10 10 H 1.48497 * 109.46834 * 204.99831 * 8 6 4 11 11 H 1.48495 * 109.47013 * 325.00057 * 8 6 4 12 12 C 1.53000 * 109.47107 * 119.99708 * 2 1 3 13 13 N 1.46503 * 109.47285 * 300.00306 * 12 2 1 14 14 C 1.34778 * 119.99557 * 179.97438 * 13 12 2 15 15 O 1.21280 * 120.00572 * 0.27889 * 14 13 12 16 16 C 1.50702 * 119.99295 * 179.97438 * 14 13 12 17 17 H 1.08992 * 109.68635 * 60.00674 * 16 14 13 18 18 C 1.53303 * 109.68326 * 180.53585 * 16 14 13 19 19 C 1.52924 * 110.44259 * 175.96943 * 18 16 14 20 20 C 1.51400 * 109.74964 * 301.01633 * 19 18 16 21 21 O 1.21445 * 121.33811 * 210.88713 * 20 19 18 22 22 C 1.41517 * 117.31485 * 30.91293 * 20 19 18 23 23 C 1.37278 * 129.84249 * 178.44659 * 22 20 19 24 24 C 1.39931 * 106.74688 * 180.36731 * 23 22 20 25 25 C 1.35937 * 107.98045 * 359.96085 * 24 23 22 26 26 N 1.34097 * 109.01864 * 359.87518 * 25 24 23 27 27 H 1.09004 * 109.46994 * 293.93138 * 1 2 3 28 28 H 1.08995 * 109.47095 * 53.93283 * 1 2 3 29 29 H 1.09000 * 109.47167 * 173.93647 * 1 2 3 30 30 H 1.09000 * 109.47577 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46972 * 300.00462 * 3 2 1 32 32 H 1.09007 * 109.47027 * 59.99559 * 3 2 1 33 33 H 0.97002 * 119.99966 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47021 * 179.97438 * 12 2 1 35 35 H 1.09005 * 109.47201 * 60.00087 * 12 2 1 36 36 H 0.96997 * 119.99813 * 0.02562 * 13 12 2 37 37 H 1.09001 * 109.30262 * 296.30644 * 18 16 14 38 38 H 1.08998 * 109.31026 * 55.70860 * 18 16 14 39 39 H 1.08992 * 109.43576 * 180.91505 * 19 18 16 40 40 H 1.09005 * 109.34945 * 61.06051 * 19 18 16 41 41 H 1.07996 * 126.62551 * 0.39216 * 23 22 20 42 42 H 1.07995 * 126.00825 * 179.97438 * 24 23 22 43 43 H 1.08002 * 125.49227 * 179.91191 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6926 -1.5594 -1.1321 6 6 1.6491 -0.2764 -2.4818 7 7 0.9350 0.8208 -2.6071 8 14 2.1442 -1.2471 -3.9991 9 1 1.1619 -2.3362 -4.2322 10 1 2.1707 -0.3439 -5.1776 11 1 3.4932 -1.8327 -3.7937 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8769 -0.4914 3.6695 15 8 2.5780 -1.4747 3.7809 16 6 1.3749 0.2194 4.9000 17 1 0.2850 0.2221 4.9035 18 6 1.8936 -0.4920 6.1550 19 6 1.4775 0.2721 7.4125 20 6 2.0293 1.6811 7.3611 21 8 2.3282 2.2798 8.3745 22 6 2.1820 2.2724 6.0845 23 6 2.6238 3.5266 5.7433 24 6 2.5740 3.6057 4.3471 25 6 2.1115 2.4175 3.8758 26 7 1.8729 1.5996 4.9113 27 1 -0.3633 0.4169 0.9394 28 1 -0.3633 0.6050 -0.8306 29 1 -0.3633 -1.0219 -0.1086 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.6657 1.1263 -3.4875 34 1 3.1300 -0.7216 1.2490 35 1 1.6767 -1.7489 1.2493 36 1 0.9937 0.7578 2.3564 37 1 1.4827 -1.5009 6.1930 38 1 2.9812 -0.5504 6.1127 39 1 1.8680 -0.2383 8.2929 40 1 0.3896 0.3105 7.4684 41 1 2.9476 4.3022 6.4215 42 1 2.8540 4.4603 3.7492 43 1 1.9611 2.1716 2.8349 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458040463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:26 Heat of formation + Delta-G solvation = -39.915197 kcal Electronic energy + Delta-G solvation = -25536.902069 eV Core-core repulsion = 21968.363204 eV Total energy + Delta-G solvation = -3568.538865 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.11711 -40.82704 -39.78729 -38.32981 -36.36759 -35.20545 -33.09339 -32.19179 -30.41613 -29.05750 -27.59061 -27.51316 -26.81903 -24.36681 -23.27324 -22.25433 -21.59180 -20.61361 -19.65466 -18.95436 -18.17811 -17.75213 -16.89369 -16.77131 -16.47547 -16.22394 -16.04623 -15.77900 -15.41502 -15.19845 -14.86001 -14.74631 -14.31192 -14.06137 -13.73230 -13.43595 -13.34108 -13.23488 -13.14395 -13.00547 -12.93146 -12.67916 -12.60763 -12.25633 -12.23885 -12.14584 -11.49636 -11.41142 -11.09293 -10.82669 -10.72277 -10.39718 -10.10870 -9.85379 -9.35246 -8.03548 -6.17499 -0.02686 0.97052 1.42779 1.46597 1.52360 1.54590 1.94076 1.97202 2.17219 2.46744 3.06078 3.14820 3.21291 3.50773 3.72146 3.77890 3.94702 4.14669 4.32356 4.36945 4.40521 4.47069 4.49081 4.70022 4.75775 4.87283 4.94819 4.97381 5.01631 5.04340 5.10390 5.18172 5.22216 5.24117 5.50692 5.65401 5.67129 5.68789 5.84122 6.06724 6.14273 6.19880 6.37122 6.42483 6.50722 6.85657 6.99249 7.50212 8.95602 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.027822 B = 0.003542 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.169247 B = 7902.966799 C = 8526.721788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.530 4.530 5 H 0.045 0.955 6 C 0.032 3.968 7 N -0.896 5.896 8 Si 0.940 3.060 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.277 1.277 12 C 0.145 3.855 13 N -0.704 5.704 14 C 0.504 3.496 15 O -0.560 6.560 16 C 0.116 3.884 17 H 0.155 0.845 18 C -0.105 4.105 19 C -0.156 4.156 20 C 0.422 3.578 21 O -0.497 6.497 22 C -0.118 4.118 23 C -0.095 4.095 24 C -0.220 4.220 25 C 0.034 3.966 26 N -0.415 5.415 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.260 0.740 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.408 0.592 37 H 0.123 0.877 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.133 0.867 41 H 0.157 0.843 42 H 0.164 0.836 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.073 2.508 15.345 15.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.063 0.937 6 C -0.168 4.168 7 N -0.534 5.534 8 Si 0.767 3.233 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.022 3.978 13 N -0.356 5.356 14 C 0.289 3.711 15 O -0.437 6.437 16 C 0.012 3.988 17 H 0.172 0.828 18 C -0.143 4.143 19 C -0.194 4.194 20 C 0.305 3.695 21 O -0.377 6.377 22 C -0.225 4.225 23 C -0.122 4.122 24 C -0.244 4.244 25 C -0.103 4.103 26 N -0.092 5.092 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.247 0.753 37 H 0.141 0.859 38 H 0.084 0.916 39 H 0.137 0.863 40 H 0.151 0.849 41 H 0.174 0.826 42 H 0.181 0.819 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.646 1.817 15.770 16.093 hybrid contribution 0.216 -0.167 -1.614 1.637 sum -2.430 1.650 14.156 14.458 Atomic orbital electron populations 1.21663 0.96953 0.99392 0.99742 1.18365 0.93272 0.93072 0.90238 1.21730 0.98091 0.97677 1.00383 1.21231 1.29582 1.14489 0.91545 0.93690 1.25388 0.95187 0.95482 1.00750 1.69910 1.38044 1.21821 1.23645 0.85852 0.78503 0.78877 0.80028 1.20502 1.21115 1.20211 1.21379 0.97305 0.95464 0.83647 1.46434 1.52108 1.31624 1.05484 1.20690 0.80546 0.84921 0.84991 1.90729 1.38038 1.28075 1.86905 1.22121 1.03021 0.78580 0.95108 0.82771 1.21638 1.02558 1.00701 0.89360 1.22203 1.05051 0.92277 0.99829 1.20632 0.73491 0.89609 0.85773 1.90591 1.42796 1.66519 1.37757 1.20237 1.18170 0.96052 0.88036 1.21573 0.99174 0.95254 0.96159 1.21352 1.09574 0.98998 0.94448 1.22402 1.02911 0.91291 0.93719 1.44259 1.48206 1.10548 1.06212 0.94298 0.92194 0.96088 0.96131 0.91867 0.94411 0.93060 0.93918 0.93380 0.75260 0.85882 0.91559 0.86254 0.84884 0.82567 0.81853 0.80663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 8.03 71.98 0.58 -4.24 16 2 C 0.05 2.15 0.50 -52.93 -0.03 2.12 16 3 C -0.12 -4.86 8.11 71.98 0.58 -4.28 16 4 C -0.53 -26.37 8.01 25.60 0.20 -26.17 16 5 H 0.04 2.30 7.75 -2.91 -0.02 2.27 16 6 C 0.03 1.62 5.13 84.66 0.43 2.06 16 7 N -0.90 -45.56 9.45 21.45 0.20 -45.36 16 8 Si 0.94 41.02 29.54 68.60 2.03 43.04 16 9 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 12 C 0.15 5.46 4.50 86.38 0.39 5.85 16 13 N -0.70 -20.29 3.93 -463.04 -1.82 -22.11 16 14 C 0.50 13.93 7.08 87.66 0.62 14.55 16 15 O -0.56 -19.63 15.96 -3.03 -0.05 -19.68 16 16 C 0.12 2.24 3.47 44.30 0.15 2.40 16 17 H 0.16 1.94 8.14 -2.39 -0.02 1.92 16 18 C -0.10 -1.77 4.55 30.67 0.14 -1.63 16 19 C -0.16 -2.24 6.11 30.05 0.18 -2.06 16 20 C 0.42 9.60 6.95 26.72 0.19 9.78 16 21 O -0.50 -14.34 17.81 -3.54 -0.06 -14.41 16 22 C -0.12 -2.82 6.50 38.63 0.25 -2.57 16 23 C -0.10 -2.25 10.82 22.45 0.24 -2.00 16 24 C -0.22 -4.91 10.83 22.15 0.24 -4.68 16 25 C 0.03 0.79 10.29 83.81 0.86 1.66 16 26 N -0.41 -9.19 3.03 -497.23 -1.51 -10.69 16 27 H 0.04 1.25 6.71 -2.38 -0.02 1.24 16 28 H 0.06 2.72 6.25 -2.39 -0.01 2.71 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 2.90 6.10 -2.38 -0.01 2.89 16 32 H 0.04 1.21 5.46 -2.38 -0.01 1.19 16 33 H 0.26 12.85 8.31 -92.71 -0.77 12.08 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.41 10.20 4.36 -92.71 -0.40 9.80 16 37 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 1.44 7.99 -2.39 -0.02 1.43 16 39 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 42 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 43 H 0.18 3.99 4.28 -2.91 -0.01 3.98 16 Total: -1.00 -61.95 340.39 4.47 -57.49 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.63 Total: 20.92 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 5.04 Total: -9.20 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -3.12 Total: -78.16 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.11 Total: -34.08 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -61.95 4.47 -57.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458040463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.573 kcal (2) G-P(sol) polarization free energy of solvation -61.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds