Wall clock time and date at job start Tue Mar 31 2020 09:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46936 * 2 1 4 4 C 1.50700 * 109.47418 * 240.00417 * 2 1 3 5 5 H 1.08001 * 120.00141 * 236.10848 * 4 2 1 6 6 C 1.37875 * 120.00171 * 56.09880 * 4 2 1 7 7 N 1.31512 * 120.00496 * 196.64146 * 6 4 2 8 8 Si 1.86806 * 119.99688 * 16.64318 * 6 4 2 9 9 H 1.48500 * 109.47121 * 88.95272 * 8 6 4 10 10 H 1.48501 * 109.46955 * 208.94696 * 8 6 4 11 11 H 1.48500 * 109.47420 * 328.94924 * 8 6 4 12 12 C 1.52994 * 109.46854 * 120.00351 * 2 1 3 13 13 N 1.46500 * 109.47140 * 299.99989 * 12 2 1 14 14 C 1.34781 * 120.00217 * 180.02562 * 13 12 2 15 15 O 1.21597 * 119.99542 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00157 * 180.02562 * 14 13 12 17 17 C 1.40151 * 120.00109 * 185.06442 * 16 14 13 18 18 C 1.38856 * 120.19076 * 33.42372 * 17 16 14 19 19 C 1.37866 * 120.27761 * 180.20202 * 18 17 16 20 20 C 1.39284 * 120.33758 * 0.02562 * 19 18 17 21 21 C 1.38972 * 118.97261 * 359.60788 * 20 19 18 22 22 C 1.37630 * 120.83957 * 0.57290 * 21 20 19 23 23 C 1.51659 * 106.99312 * 180.57034 * 21 20 19 24 24 C 1.54700 * 101.95231 * 15.72025 * 23 21 20 25 25 O 1.36241 * 129.79039 * 179.57269 * 20 19 18 26 26 H 1.08994 * 109.47393 * 306.84888 * 1 2 3 27 27 H 1.09006 * 109.47040 * 66.85316 * 1 2 3 28 28 H 1.09007 * 109.46808 * 186.84480 * 1 2 3 29 29 H 1.08996 * 109.46906 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47389 * 300.00198 * 3 2 1 31 31 H 1.09003 * 109.46520 * 60.00250 * 3 2 1 32 32 H 0.97002 * 120.00628 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.46972 * 180.02562 * 12 2 1 34 34 H 1.08992 * 109.47787 * 60.00159 * 12 2 1 35 35 H 0.97001 * 119.99992 * 0.02562 * 13 12 2 36 36 H 0.97000 * 120.00407 * 5.05445 * 16 14 13 37 37 H 1.08004 * 119.86174 * 0.17767 * 18 17 16 38 38 H 1.08001 * 119.83137 * 180.02562 * 19 18 17 39 39 H 1.08006 * 120.01109 * 179.64185 * 22 21 20 40 40 H 1.09006 * 110.93801 * 257.55141 * 23 21 20 41 41 H 1.08996 * 110.94346 * 133.89826 * 23 21 20 42 42 H 1.08998 * 110.74622 * 92.92074 * 24 23 21 43 43 H 1.08994 * 110.75247 * 216.09057 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7103 -1.2305 5 1 2.7042 -1.5503 -1.1327 6 6 1.6344 -0.2880 -2.4811 7 7 1.7913 -1.0760 -3.5222 8 14 0.8723 1.4039 -2.6969 9 1 1.9435 2.4008 -2.9495 10 1 -0.0646 1.3815 -3.8488 11 1 0.1321 1.7743 -1.4639 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0308 2.4454 14 6 1.8775 -0.4910 3.6695 15 8 2.5766 -1.4797 3.7810 16 7 1.4279 0.1440 4.7699 17 6 1.8520 -0.2695 6.0401 18 6 3.1342 -0.7716 6.2190 19 6 3.5518 -1.1828 7.4669 20 6 2.6921 -1.0990 8.5595 21 6 1.4134 -0.5879 8.3723 22 6 0.9919 -0.1800 7.1272 23 6 0.7260 -0.6072 9.7240 24 6 1.9205 -0.7993 10.6881 25 8 2.8969 -1.4523 9.8592 26 1 -0.3634 0.6163 0.8223 27 1 -0.3633 0.4040 -0.9450 28 1 -0.3633 -1.0204 0.1225 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8901 32 1 1.5109 -0.7791 -4.4021 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.9936 0.7577 2.3564 36 1 0.8107 0.8873 4.6829 37 1 3.8069 -0.8408 5.3769 38 1 4.5508 -1.5718 7.5979 39 1 -0.0067 0.2098 6.9958 40 1 0.0298 -1.4429 9.7951 41 1 0.2182 0.3378 9.9164 42 1 2.2930 0.1634 11.0380 43 1 1.6395 -1.4321 11.5299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459263336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:02 Heat of formation + Delta-G solvation = -13.705059 kcal Electronic energy + Delta-G solvation = -24364.086294 eV Core-core repulsion = 20796.683986 eV Total energy + Delta-G solvation = -3567.402308 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.29060 -40.14526 -37.82938 -36.63283 -34.25229 -33.34974 -32.83576 -31.51127 -29.56009 -28.82682 -26.38959 -25.91071 -24.87921 -23.70733 -22.40646 -22.21066 -20.47671 -19.24216 -18.42748 -17.61070 -17.26223 -16.62108 -16.15650 -16.10335 -15.30140 -15.24381 -14.62895 -14.25462 -13.96124 -13.79819 -13.46211 -13.39649 -13.06542 -12.95466 -12.88719 -12.71197 -12.62245 -12.23635 -12.05396 -12.02156 -11.57674 -11.28478 -10.94056 -10.47467 -10.35368 -10.24652 -10.07229 -10.00482 -9.78457 -9.20368 -9.00926 -8.67553 -8.61807 -8.44185 -7.70383 -6.17962 -4.13808 1.18202 1.20240 2.74533 3.10146 3.21160 3.27217 3.28596 3.35686 3.71417 4.14941 4.31197 4.33431 4.41944 4.63933 4.72993 5.00649 5.11137 5.12777 5.23962 5.35682 5.40774 5.54492 5.69641 5.76673 5.82133 6.02220 6.04230 6.19308 6.21017 6.32756 6.38030 6.43987 6.49929 6.59460 6.67984 6.68830 6.74251 6.91841 7.07121 7.10155 7.20323 7.40142 7.70308 8.13375 8.42837 8.73866 8.88919 9.46754 10.95020 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.043776 B = 0.002564 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.461566 B =10915.695341 C =11209.799091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.030 3.970 3 C -0.146 4.146 4 C -0.515 4.515 5 H 0.077 0.923 6 C 0.077 3.923 7 N -0.888 5.888 8 Si 0.873 3.127 9 H -0.286 1.286 10 H -0.302 1.302 11 H -0.241 1.241 12 C 0.159 3.841 13 N -0.731 5.731 14 C 0.697 3.303 15 O -0.577 6.577 16 N -0.690 5.690 17 C 0.152 3.848 18 C -0.085 4.085 19 C -0.115 4.115 20 C 0.080 3.920 21 C -0.158 4.158 22 C -0.103 4.103 23 C -0.108 4.108 24 C 0.052 3.948 25 O -0.307 6.307 26 H 0.021 0.979 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.026 0.974 32 H 0.265 0.735 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.394 0.606 36 H 0.404 0.596 37 H 0.147 0.853 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.651 6.168 25.301 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 C -0.203 4.203 4 C -0.553 4.553 5 H 0.095 0.905 6 C -0.126 4.126 7 N -0.524 5.524 8 Si 0.705 3.295 9 H -0.213 1.213 10 H -0.230 1.230 11 H -0.167 1.167 12 C 0.036 3.964 13 N -0.385 5.385 14 C 0.398 3.602 15 O -0.454 6.454 16 N -0.339 5.339 17 C 0.056 3.944 18 C -0.105 4.105 19 C -0.134 4.134 20 C 0.035 3.965 21 C -0.159 4.159 22 C -0.124 4.124 23 C -0.145 4.145 24 C -0.023 4.023 25 O -0.221 6.221 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.228 0.772 36 H 0.239 0.761 37 H 0.165 0.835 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.848 5.072 25.165 25.829 hybrid contribution -1.180 1.752 -0.462 2.162 sum -4.028 6.824 24.703 25.943 Atomic orbital electron populations 1.22356 0.97856 1.00142 0.99780 1.18716 0.92466 0.92337 0.93648 1.22348 1.01121 0.98282 0.98570 1.20681 1.30188 1.16330 0.88074 0.90516 1.24954 0.94746 0.96943 0.95921 1.69978 1.47186 1.35224 1.00018 0.87553 0.79360 0.85670 0.76957 1.21314 1.23046 1.16678 1.21453 0.98486 0.95588 0.80847 1.45541 1.55524 1.32905 1.04577 1.16017 0.80879 0.82841 0.80498 1.90933 1.42269 1.26653 1.85536 1.42648 1.50816 1.36964 1.03433 1.17240 0.92830 1.00634 0.83669 1.20989 0.94751 0.98074 0.96692 1.20150 0.99436 1.04013 0.89806 1.19527 0.93847 0.97868 0.85304 1.20414 0.94898 1.05407 0.95200 1.19866 0.98856 1.03181 0.90471 1.21764 0.98191 1.03800 0.90741 1.23778 0.86626 0.98184 0.93712 1.86834 1.54868 1.65791 1.14646 0.95984 0.92470 0.93257 0.92878 0.93864 0.95459 0.92557 0.91949 0.91809 0.77175 0.76087 0.83496 0.85140 0.85575 0.89177 0.89170 0.90717 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 7.51 37.16 0.28 -2.57 16 2 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 3 C -0.15 -2.85 7.64 37.16 0.28 -2.56 16 4 C -0.51 -13.59 8.61 -34.44 -0.30 -13.89 16 5 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 6 C 0.08 2.12 5.30 -17.82 -0.09 2.02 16 7 N -0.89 -26.27 13.96 55.43 0.77 -25.49 16 8 Si 0.87 20.39 22.96 -169.99 -3.90 16.49 16 9 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.24 -5.04 4.41 56.52 0.25 -4.79 16 12 C 0.16 3.10 4.50 -4.04 -0.02 3.08 16 13 N -0.73 -11.48 5.00 -65.23 -0.33 -11.81 16 14 C 0.70 11.24 8.31 -86.92 -0.72 10.52 16 15 O -0.58 -11.50 14.04 5.28 0.07 -11.43 16 16 N -0.69 -8.45 5.36 -14.16 -0.08 -8.53 16 17 C 0.15 1.93 6.29 -83.58 -0.53 1.41 16 18 C -0.08 -1.17 8.64 -39.49 -0.34 -1.51 16 19 C -0.11 -1.44 10.05 -39.33 -0.40 -1.84 16 20 C 0.08 0.97 7.04 -38.92 -0.27 0.69 16 21 C -0.16 -1.67 6.27 -104.10 -0.65 -2.32 16 22 C -0.10 -1.10 9.95 -39.56 -0.39 -1.49 16 23 C -0.11 -0.77 7.11 -26.52 -0.19 -0.96 16 24 C 0.05 0.36 8.01 38.05 0.30 0.67 16 25 O -0.31 -3.47 11.11 -20.51 -0.23 -3.69 16 26 H 0.02 0.35 7.06 -51.93 -0.37 -0.01 16 27 H 0.06 1.20 3.81 -51.93 -0.20 1.01 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.89 2.67 -51.93 -0.14 0.75 16 31 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.39 5.21 6.24 -40.82 -0.25 4.95 16 36 H 0.40 3.54 8.84 -40.82 -0.36 3.18 16 37 H 0.15 2.24 6.43 -52.48 -0.34 1.91 16 38 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -32.32 336.24 -7.68 -40.00 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.95 Total: 7.60 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -3.11 Total: -8.19 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.37 Total: -45.83 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.15 Total: -15.12 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -3.90 Total: 16.49 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.32 -7.68 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459263336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.291 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds