Wall clock time and date at job start Tue Mar 31 2020 09:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46936 * 2 1 4 4 C 1.50700 * 109.47418 * 240.00417 * 2 1 3 5 5 H 1.08001 * 120.00141 * 236.10848 * 4 2 1 6 6 C 1.37875 * 120.00171 * 56.09880 * 4 2 1 7 7 N 1.31512 * 120.00496 * 196.64146 * 6 4 2 8 8 Si 1.86806 * 119.99688 * 16.64318 * 6 4 2 9 9 H 1.48500 * 109.47121 * 88.95272 * 8 6 4 10 10 H 1.48501 * 109.46955 * 208.94696 * 8 6 4 11 11 H 1.48500 * 109.47420 * 328.94924 * 8 6 4 12 12 C 1.52994 * 109.46854 * 120.00351 * 2 1 3 13 13 N 1.46500 * 109.47140 * 299.99989 * 12 2 1 14 14 C 1.34781 * 120.00217 * 180.02562 * 13 12 2 15 15 O 1.21597 * 119.99542 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00157 * 180.02562 * 14 13 12 17 17 C 1.40151 * 120.00109 * 185.06442 * 16 14 13 18 18 C 1.38856 * 120.19076 * 33.42372 * 17 16 14 19 19 C 1.37866 * 120.27761 * 180.20202 * 18 17 16 20 20 C 1.39284 * 120.33758 * 0.02562 * 19 18 17 21 21 C 1.38972 * 118.97261 * 359.60788 * 20 19 18 22 22 C 1.37630 * 120.83957 * 0.57290 * 21 20 19 23 23 C 1.51659 * 106.99312 * 180.57034 * 21 20 19 24 24 C 1.54700 * 101.95231 * 15.72025 * 23 21 20 25 25 O 1.36241 * 129.79039 * 179.57269 * 20 19 18 26 26 H 1.08994 * 109.47393 * 306.84888 * 1 2 3 27 27 H 1.09006 * 109.47040 * 66.85316 * 1 2 3 28 28 H 1.09007 * 109.46808 * 186.84480 * 1 2 3 29 29 H 1.08996 * 109.46906 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47389 * 300.00198 * 3 2 1 31 31 H 1.09003 * 109.46520 * 60.00250 * 3 2 1 32 32 H 0.97002 * 120.00628 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.46972 * 180.02562 * 12 2 1 34 34 H 1.08992 * 109.47787 * 60.00159 * 12 2 1 35 35 H 0.97001 * 119.99992 * 0.02562 * 13 12 2 36 36 H 0.97000 * 120.00407 * 5.05445 * 16 14 13 37 37 H 1.08004 * 119.86174 * 0.17767 * 18 17 16 38 38 H 1.08001 * 119.83137 * 180.02562 * 19 18 17 39 39 H 1.08006 * 120.01109 * 179.64185 * 22 21 20 40 40 H 1.09006 * 110.93801 * 257.55141 * 23 21 20 41 41 H 1.08996 * 110.94346 * 133.89826 * 23 21 20 42 42 H 1.08998 * 110.74622 * 92.92074 * 24 23 21 43 43 H 1.08994 * 110.75247 * 216.09057 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7103 -1.2305 5 1 2.7042 -1.5503 -1.1327 6 6 1.6344 -0.2880 -2.4811 7 7 1.7913 -1.0760 -3.5222 8 14 0.8723 1.4039 -2.6969 9 1 1.9435 2.4008 -2.9495 10 1 -0.0646 1.3815 -3.8488 11 1 0.1321 1.7743 -1.4639 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0308 2.4454 14 6 1.8775 -0.4910 3.6695 15 8 2.5766 -1.4797 3.7810 16 7 1.4279 0.1440 4.7699 17 6 1.8520 -0.2695 6.0401 18 6 3.1342 -0.7716 6.2190 19 6 3.5518 -1.1828 7.4669 20 6 2.6921 -1.0990 8.5595 21 6 1.4134 -0.5879 8.3723 22 6 0.9919 -0.1800 7.1272 23 6 0.7260 -0.6072 9.7240 24 6 1.9205 -0.7993 10.6881 25 8 2.8969 -1.4523 9.8592 26 1 -0.3634 0.6163 0.8223 27 1 -0.3633 0.4040 -0.9450 28 1 -0.3633 -1.0204 0.1225 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8901 32 1 1.5109 -0.7791 -4.4021 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.9936 0.7577 2.3564 36 1 0.8107 0.8873 4.6829 37 1 3.8069 -0.8408 5.3769 38 1 4.5508 -1.5718 7.5979 39 1 -0.0067 0.2098 6.9958 40 1 0.0298 -1.4429 9.7951 41 1 0.2182 0.3378 9.9164 42 1 2.2930 0.1634 11.0380 43 1 1.6395 -1.4321 11.5299 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459263336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:01 Heat of formation + Delta-G solvation = -37.202445 kcal Electronic energy + Delta-G solvation = -24365.105217 eV Core-core repulsion = 20796.683986 eV Total energy + Delta-G solvation = -3568.421231 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.14113 -41.30930 -39.04874 -38.02442 -35.41668 -34.92392 -33.61397 -33.35450 -30.36675 -29.75221 -27.95668 -27.44691 -26.81650 -24.44577 -23.50678 -22.98988 -21.62776 -20.91624 -19.70230 -18.48743 -18.22699 -18.04094 -17.44547 -17.07629 -16.89252 -16.49134 -16.03641 -15.43130 -15.14534 -14.96329 -14.79785 -14.55818 -14.40023 -14.18995 -13.97171 -13.91276 -13.75861 -13.69788 -13.43851 -12.97989 -12.58996 -12.38796 -12.20511 -12.12290 -11.97719 -11.79879 -11.72131 -11.35554 -11.07883 -10.80286 -10.57703 -10.31568 -10.03290 -9.85897 -8.63637 -8.29533 -6.29688 0.25776 0.30963 1.37599 1.40275 1.51452 1.58719 2.04082 2.36830 2.39242 2.76025 3.06110 3.23187 3.50496 3.72878 3.95294 4.09797 4.21125 4.24196 4.31673 4.35935 4.44243 4.53655 4.67970 4.75985 4.80856 4.86337 4.87195 4.89871 4.95545 4.96605 5.07765 5.09829 5.19044 5.28867 5.35521 5.40333 5.46461 5.56530 5.73284 5.76132 5.82542 6.00263 6.23770 6.32499 6.74113 7.04239 7.34315 7.51093 8.87711 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.043776 B = 0.002564 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.461566 B =10915.695341 C =11209.799091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.029 3.971 3 C -0.145 4.145 4 C -0.520 4.520 5 H 0.026 0.974 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.933 3.067 9 H -0.285 1.285 10 H -0.313 1.313 11 H -0.189 1.189 12 C 0.176 3.824 13 N -0.717 5.717 14 C 0.697 3.303 15 O -0.621 6.621 16 N -0.668 5.668 17 C 0.133 3.867 18 C -0.105 4.105 19 C -0.131 4.131 20 C 0.069 3.931 21 C -0.158 4.158 22 C -0.092 4.092 23 C -0.102 4.102 24 C 0.044 3.956 25 O -0.328 6.328 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.264 0.736 33 H 0.042 0.958 34 H 0.039 0.961 35 H 0.411 0.589 36 H 0.425 0.575 37 H 0.122 0.878 38 H 0.132 0.868 39 H 0.160 0.840 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.089 0.911 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.588 9.281 28.662 30.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 C -0.202 4.202 4 C -0.558 4.558 5 H 0.044 0.956 6 C -0.181 4.181 7 N -0.584 5.584 8 Si 0.761 3.239 9 H -0.212 1.212 10 H -0.242 1.242 11 H -0.112 1.112 12 C 0.052 3.948 13 N -0.373 5.373 14 C 0.398 3.602 15 O -0.501 6.501 16 N -0.318 5.318 17 C 0.038 3.962 18 C -0.126 4.126 19 C -0.150 4.150 20 C 0.024 3.976 21 C -0.160 4.160 22 C -0.112 4.112 23 C -0.139 4.139 24 C -0.030 4.030 25 O -0.243 6.243 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.249 0.751 36 H 0.264 0.736 37 H 0.140 0.860 38 H 0.150 0.850 39 H 0.177 0.823 40 H 0.119 0.881 41 H 0.136 0.864 42 H 0.107 0.893 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.823 8.242 28.603 30.331 hybrid contribution -0.173 0.637 -1.344 1.497 sum -5.996 8.879 27.259 29.289 Atomic orbital electron populations 1.22286 0.95982 1.00698 1.01082 1.18643 0.93811 0.93262 0.91486 1.22273 1.00901 0.96613 1.00438 1.21010 1.28847 1.15171 0.90757 0.95573 1.25877 0.95744 1.01134 0.95356 1.70145 1.49839 1.37740 1.00713 0.86601 0.78791 0.79997 0.78507 1.21245 1.24194 1.11198 1.20930 0.97200 0.94650 0.82056 1.45087 1.55733 1.33151 1.03336 1.16107 0.80437 0.82474 0.81195 1.90921 1.44143 1.28807 1.86197 1.42293 1.50416 1.36918 1.02189 1.17403 0.92908 1.01657 0.84259 1.20854 0.95477 0.99816 0.96411 1.20200 1.00075 1.04676 0.90090 1.19702 0.94531 0.97777 0.85625 1.20898 0.94599 1.03763 0.96707 1.20127 0.99670 1.01917 0.89529 1.21887 0.98148 1.05740 0.88119 1.24152 0.85809 0.99297 0.93785 1.86811 1.56501 1.66460 1.14541 0.91202 0.93421 0.94252 0.93646 0.94426 0.90804 0.92726 0.93971 0.94288 0.75104 0.73632 0.86035 0.85016 0.82286 0.88084 0.86377 0.89308 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 7.51 71.98 0.54 -4.68 16 2 C 0.03 1.20 0.50 -52.93 -0.03 1.18 16 3 C -0.15 -5.18 7.64 71.98 0.55 -4.63 16 4 C -0.52 -28.41 8.61 25.60 0.22 -28.19 16 5 H 0.03 1.63 7.99 -2.91 -0.02 1.61 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.95 -58.53 13.96 21.45 0.30 -58.23 16 8 Si 0.93 41.32 22.96 68.60 1.57 42.89 16 9 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.31 -14.35 7.11 99.48 0.71 -13.65 16 11 H -0.19 -6.83 4.41 99.48 0.44 -6.39 16 12 C 0.18 6.90 4.50 86.38 0.39 7.29 16 13 N -0.72 -20.98 5.00 -478.53 -2.39 -23.37 16 14 C 0.70 21.75 8.31 179.05 1.49 23.24 16 15 O -0.62 -25.39 14.04 -4.02 -0.06 -25.44 16 16 N -0.67 -14.78 5.36 -316.99 -1.70 -16.48 16 17 C 0.13 3.18 6.29 38.12 0.24 3.42 16 18 C -0.10 -2.96 8.64 22.33 0.19 -2.77 16 19 C -0.13 -3.39 10.05 22.43 0.23 -3.16 16 20 C 0.07 1.60 7.04 22.70 0.16 1.76 16 21 C -0.16 -2.90 6.27 -19.53 -0.12 -3.02 16 22 C -0.09 -1.67 9.95 22.29 0.22 -1.44 16 23 C -0.10 -1.03 7.11 30.73 0.22 -0.81 16 24 C 0.04 0.47 8.01 72.56 0.58 1.05 16 25 O -0.33 -6.91 11.11 -96.30 -1.07 -7.98 16 26 H 0.07 1.88 7.06 -2.39 -0.02 1.86 16 27 H 0.05 1.83 3.81 -2.38 -0.01 1.82 16 28 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.39 2.67 -2.39 -0.01 1.38 16 31 H 0.07 1.95 6.86 -2.39 -0.02 1.93 16 32 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.41 8.98 6.24 -92.71 -0.58 8.40 16 36 H 0.42 5.70 8.84 -92.71 -0.82 4.88 16 37 H 0.12 3.99 6.43 -2.91 -0.02 3.97 16 38 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 39 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.10 0.85 8.14 -2.38 -0.02 0.84 16 41 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -76.53 336.24 1.37 -75.16 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -0.61 Total: 22.85 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 5.33 Total: -9.39 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -3.79 Total: -98.08 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -1.13 Total: -33.42 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.57 Total: 42.89 kcal Total: -76.53 1.37 -75.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459263336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.955 kcal (2) G-P(sol) polarization free energy of solvation -76.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds