Wall clock time and date at job start Tue Mar 31 2020 08:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.46832 * 2 1 4 4 C 1.52995 * 109.47661 * 239.99628 * 2 1 3 5 5 C 1.50707 * 109.47183 * 119.99243 * 2 1 3 6 6 O 1.21300 * 119.99444 * 4.44358 * 5 2 1 7 7 C 1.46827 * 120.00049 * 184.16246 * 5 2 1 8 8 C 1.40064 * 120.10166 * 354.39038 * 7 5 2 9 9 C 1.36601 * 119.89315 * 179.75750 * 8 7 5 10 10 C 1.39215 * 120.10577 * 0.51902 * 9 8 7 11 11 N 1.39294 * 119.90170 * 179.71290 * 10 9 8 12 12 C 1.34780 * 120.00133 * 215.09878 * 11 10 9 13 13 O 1.21575 * 120.00198 * 355.19522 * 12 11 10 14 14 N 1.34783 * 119.99751 * 175.19486 * 12 11 10 15 15 C 1.46504 * 119.99495 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.46788 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00257 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00192 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00369 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99542 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47426 * 90.00073 * 20 18 16 22 22 H 1.48509 * 109.46924 * 210.00308 * 20 18 16 23 23 H 1.48497 * 109.47219 * 329.99798 * 20 18 16 24 24 C 1.39219 * 120.20055 * 359.73562 * 10 9 8 25 25 C 1.36600 * 120.10637 * 0.02562 * 24 10 9 26 26 H 1.09002 * 109.47419 * 300.00410 * 1 2 3 27 27 H 1.08998 * 109.47247 * 60.00588 * 1 2 3 28 28 H 1.09006 * 109.47382 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46773 * 185.03155 * 3 2 1 30 30 H 1.08998 * 109.47224 * 305.02187 * 3 2 1 31 31 H 1.09000 * 109.47510 * 65.02910 * 3 2 1 32 32 H 1.09001 * 109.46951 * 305.10005 * 4 2 1 33 33 H 1.09005 * 109.47199 * 65.09180 * 4 2 1 34 34 H 1.08997 * 109.47109 * 185.09804 * 4 2 1 35 35 H 1.08003 * 120.05149 * 0.02562 * 8 7 5 36 36 H 1.08000 * 119.94355 * 180.22813 * 9 8 7 37 37 H 0.96998 * 120.00288 * 35.09727 * 11 10 9 38 38 H 0.96994 * 120.00470 * 359.97438 * 14 12 11 39 39 H 1.08993 * 109.47690 * 300.00346 * 15 14 12 40 40 H 1.09008 * 109.47039 * 60.00585 * 15 14 12 41 41 H 0.96999 * 120.00163 * 179.97438 * 19 18 16 42 42 H 1.08008 * 119.95195 * 179.97438 * 24 10 9 43 43 H 1.08002 * 120.05630 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 8 1.2469 -1.2411 1.9875 7 6 3.4727 -0.7650 1.5101 8 6 4.3888 -0.2618 0.5777 9 6 5.7276 -0.3104 0.8443 10 6 6.1827 -0.8687 2.0356 11 7 7.5492 -0.9215 2.3004 12 6 8.0655 -1.9699 2.9718 13 8 7.3289 -2.8258 3.4222 14 7 9.3987 -2.0695 3.1437 15 6 9.9598 -3.2089 3.8739 16 6 11.4607 -3.0826 3.9253 17 1 11.9478 -2.2383 3.4602 18 6 12.2121 -4.0453 4.5652 19 7 13.5218 -3.9354 4.6096 20 14 11.3697 -5.5067 5.3679 21 1 11.2483 -6.6109 4.3824 22 1 12.1742 -5.9655 6.5289 23 1 10.0170 -5.1054 5.8308 24 6 5.2760 -1.3750 2.9629 25 6 3.9351 -1.3264 2.7072 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1262 1.4439 -0.0901 30 1 1.6049 1.9817 -0.8416 31 1 1.7519 1.9298 0.9316 32 1 1.6041 -1.7192 -1.2959 33 1 1.7531 -0.1576 -2.1369 34 1 3.1262 -0.8010 -1.2045 35 1 4.0369 0.1680 -0.3486 36 1 6.4345 0.0808 0.1276 37 1 8.1292 -0.2038 2.0016 38 1 9.9864 -1.3870 2.7840 39 1 9.5618 -3.2220 4.8885 40 1 9.6900 -4.1347 3.3658 41 1 14.0504 -4.6125 5.0602 42 1 5.6335 -1.8077 3.8857 43 1 3.2325 -1.7197 3.4270 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488908992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:23 Heat of formation + Delta-G solvation = -38.978328 kcal Electronic energy + Delta-G solvation = -24032.820327 eV Core-core repulsion = 20464.322088 eV Total energy + Delta-G solvation = -3568.498239 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89799 -40.04673 -38.15594 -36.15706 -34.81838 -34.35806 -32.46561 -31.24054 -30.18990 -27.92371 -27.69957 -27.32728 -24.85507 -23.14463 -22.42077 -21.55572 -20.54417 -19.10239 -18.49755 -17.74376 -16.69634 -16.52149 -16.02061 -15.31753 -15.13035 -15.06519 -14.64981 -14.54558 -14.19968 -13.97207 -13.83602 -13.35132 -13.16868 -12.93503 -12.78267 -12.57120 -12.56200 -12.43962 -12.31713 -12.26192 -12.03670 -11.39150 -11.29284 -11.06783 -10.90606 -10.84130 -10.29230 -10.03958 -9.85138 -9.58375 -9.52847 -9.11266 -8.86055 -8.44445 -8.01213 -6.27530 -4.30689 0.55216 1.35189 2.27182 2.89027 3.23437 3.30964 3.38052 3.42311 3.75696 3.81432 4.28086 4.37075 4.54581 4.56774 4.62978 4.70774 4.81050 5.07882 5.15127 5.20201 5.21647 5.25165 5.35796 5.41507 5.47787 5.50524 5.51317 5.64223 5.76648 5.87007 5.88903 5.98117 6.05162 6.22651 6.33838 6.49696 6.59960 6.95263 6.98793 7.04339 7.18133 7.36284 7.40928 8.14536 8.45343 8.69335 8.89604 9.31741 10.84172 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.036592 B = 0.002479 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.012243 B =11293.376673 C =11723.844970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.110 4.110 3 C -0.148 4.148 4 C -0.150 4.150 5 C 0.409 3.591 6 O -0.458 6.458 7 C -0.202 4.202 8 C -0.062 4.062 9 C -0.171 4.171 10 C 0.217 3.783 11 N -0.692 5.692 12 C 0.691 3.309 13 O -0.581 6.581 14 N -0.712 5.712 15 C 0.237 3.763 16 C -0.546 4.546 17 H 0.080 0.920 18 C 0.079 3.921 19 N -0.890 5.890 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.138 4.138 25 C -0.038 4.038 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.408 0.592 38 H 0.395 0.605 39 H 0.027 0.973 40 H 0.022 0.978 41 H 0.269 0.731 42 H 0.150 0.850 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.856 12.448 -12.110 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.207 4.207 5 C 0.287 3.713 6 O -0.334 6.334 7 C -0.204 4.204 8 C -0.081 4.081 9 C -0.192 4.192 10 C 0.118 3.882 11 N -0.339 5.339 12 C 0.391 3.609 13 O -0.458 6.458 14 N -0.364 5.364 15 C 0.115 3.885 16 C -0.584 4.584 17 H 0.098 0.902 18 C -0.125 4.125 19 N -0.527 5.527 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.159 4.159 25 C -0.057 4.057 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.243 0.757 38 H 0.229 0.771 39 H 0.044 0.956 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.167 0.833 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.611 11.212 -11.173 26.787 hybrid contribution 0.523 -0.130 0.058 0.542 sum -21.088 11.082 -11.115 26.288 Atomic orbital electron populations 1.21712 0.92593 1.02708 1.01983 1.21065 0.97716 0.97068 0.95264 1.22096 1.02219 0.93442 1.02738 1.22084 1.02245 1.00640 0.95700 1.22320 0.87934 0.75998 0.85002 1.90508 1.58528 1.37377 1.46938 1.20303 0.94518 1.07757 0.97807 1.21329 0.92178 0.95951 0.98596 1.20643 0.96373 1.06386 0.95836 1.17879 0.82774 0.95079 0.92419 1.42747 1.06738 1.24204 1.60168 1.16138 0.83694 0.81576 0.79447 1.90887 1.58808 1.41808 1.54330 1.45475 1.03435 1.28782 1.58681 1.19460 0.94164 0.83512 0.91413 1.21046 0.88474 1.10906 1.37977 0.90206 1.24774 0.94710 0.97878 0.95180 1.69868 1.04749 1.35377 1.42745 0.86816 0.80350 0.82905 0.79621 1.19788 1.20831 1.18431 1.21201 0.91965 1.01955 1.00782 1.21064 0.95414 0.93679 0.95538 0.92198 0.92057 0.92020 0.90870 0.91493 0.92133 0.92008 0.91307 0.90910 0.83760 0.85130 0.75661 0.77089 0.95558 0.96031 0.92154 0.83269 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 7.77 37.15 0.29 -0.75 16 2 C -0.11 -0.88 0.75 -155.66 -0.12 -1.00 16 3 C -0.15 -0.92 8.10 37.16 0.30 -0.62 16 4 C -0.15 -0.99 8.19 37.16 0.30 -0.68 16 5 C 0.41 4.66 5.94 -30.83 -0.18 4.48 16 6 O -0.46 -6.61 15.98 5.54 0.09 -6.52 16 7 C -0.20 -2.34 5.70 -105.05 -0.60 -2.94 16 8 C -0.06 -0.58 7.18 -39.49 -0.28 -0.87 16 9 C -0.17 -1.73 9.90 -39.81 -0.39 -2.12 16 10 C 0.22 2.86 6.30 -83.74 -0.53 2.33 16 11 N -0.69 -9.27 5.31 -14.21 -0.08 -9.35 16 12 C 0.69 12.67 8.40 -86.91 -0.73 11.94 16 13 O -0.58 -12.77 13.74 5.30 0.07 -12.69 16 14 N -0.71 -13.64 5.55 -66.41 -0.37 -14.01 16 15 C 0.24 5.62 4.50 -5.19 -0.02 5.60 16 16 C -0.55 -14.52 9.83 -34.44 -0.34 -14.86 16 17 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 18 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 19 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 20 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 24 C -0.14 -2.04 8.62 -39.81 -0.34 -2.38 16 25 C -0.04 -0.51 9.54 -39.49 -0.38 -0.89 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.54 8.05 -51.93 -0.42 0.12 16 29 H 0.07 0.41 4.85 -51.93 -0.25 0.16 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.46 4.90 -51.93 -0.25 0.21 16 35 H 0.15 0.94 3.52 -52.48 -0.18 0.75 16 36 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.41 3.96 8.83 -40.82 -0.36 3.60 16 38 H 0.40 6.47 8.34 -40.82 -0.34 6.13 16 39 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 40 H 0.02 0.54 7.57 -51.92 -0.39 0.15 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.15 2.52 6.19 -52.48 -0.32 2.20 16 43 H 0.13 1.75 7.65 -52.49 -0.40 1.35 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -32.93 349.12 -7.88 -40.80 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.84 Total: 5.95 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -3.12 Total: -0.67 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.33 Total: -48.49 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.16 Total: -19.21 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.93 -7.88 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488908992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.825 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds