Wall clock time and date at job start Tue Mar 31 2020 08:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.46832 * 2 1 4 4 C 1.52995 * 109.47661 * 239.99628 * 2 1 3 5 5 C 1.50707 * 109.47183 * 119.99243 * 2 1 3 6 6 O 1.21300 * 119.99444 * 4.44358 * 5 2 1 7 7 C 1.46827 * 120.00049 * 184.16246 * 5 2 1 8 8 C 1.40064 * 120.10166 * 354.39038 * 7 5 2 9 9 C 1.36601 * 119.89315 * 179.75750 * 8 7 5 10 10 C 1.39215 * 120.10577 * 0.51902 * 9 8 7 11 11 N 1.39294 * 119.90170 * 179.71290 * 10 9 8 12 12 C 1.34780 * 120.00133 * 215.09878 * 11 10 9 13 13 O 1.21575 * 120.00198 * 355.19522 * 12 11 10 14 14 N 1.34783 * 119.99751 * 175.19486 * 12 11 10 15 15 C 1.46504 * 119.99495 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.46788 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00257 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00192 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00369 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99542 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47426 * 90.00073 * 20 18 16 22 22 H 1.48509 * 109.46924 * 210.00308 * 20 18 16 23 23 H 1.48497 * 109.47219 * 329.99798 * 20 18 16 24 24 C 1.39219 * 120.20055 * 359.73562 * 10 9 8 25 25 C 1.36600 * 120.10637 * 0.02562 * 24 10 9 26 26 H 1.09002 * 109.47419 * 300.00410 * 1 2 3 27 27 H 1.08998 * 109.47247 * 60.00588 * 1 2 3 28 28 H 1.09006 * 109.47382 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46773 * 185.03155 * 3 2 1 30 30 H 1.08998 * 109.47224 * 305.02187 * 3 2 1 31 31 H 1.09000 * 109.47510 * 65.02910 * 3 2 1 32 32 H 1.09001 * 109.46951 * 305.10005 * 4 2 1 33 33 H 1.09005 * 109.47199 * 65.09180 * 4 2 1 34 34 H 1.08997 * 109.47109 * 185.09804 * 4 2 1 35 35 H 1.08003 * 120.05149 * 0.02562 * 8 7 5 36 36 H 1.08000 * 119.94355 * 180.22813 * 9 8 7 37 37 H 0.96998 * 120.00288 * 35.09727 * 11 10 9 38 38 H 0.96994 * 120.00470 * 359.97438 * 14 12 11 39 39 H 1.08993 * 109.47690 * 300.00346 * 15 14 12 40 40 H 1.09008 * 109.47039 * 60.00585 * 15 14 12 41 41 H 0.96999 * 120.00163 * 179.97438 * 19 18 16 42 42 H 1.08008 * 119.95195 * 179.97438 * 24 10 9 43 43 H 1.08002 * 120.05630 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 8 1.2469 -1.2411 1.9875 7 6 3.4727 -0.7650 1.5101 8 6 4.3888 -0.2618 0.5777 9 6 5.7276 -0.3104 0.8443 10 6 6.1827 -0.8687 2.0356 11 7 7.5492 -0.9215 2.3004 12 6 8.0655 -1.9699 2.9718 13 8 7.3289 -2.8258 3.4222 14 7 9.3987 -2.0695 3.1437 15 6 9.9598 -3.2089 3.8739 16 6 11.4607 -3.0826 3.9253 17 1 11.9478 -2.2383 3.4602 18 6 12.2121 -4.0453 4.5652 19 7 13.5218 -3.9354 4.6096 20 14 11.3697 -5.5067 5.3679 21 1 11.2483 -6.6109 4.3824 22 1 12.1742 -5.9655 6.5289 23 1 10.0170 -5.1054 5.8308 24 6 5.2760 -1.3750 2.9629 25 6 3.9351 -1.3264 2.7072 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1262 1.4439 -0.0901 30 1 1.6049 1.9817 -0.8416 31 1 1.7519 1.9298 0.9316 32 1 1.6041 -1.7192 -1.2959 33 1 1.7531 -0.1576 -2.1369 34 1 3.1262 -0.8010 -1.2045 35 1 4.0369 0.1680 -0.3486 36 1 6.4345 0.0808 0.1276 37 1 8.1292 -0.2038 2.0016 38 1 9.9864 -1.3870 2.7840 39 1 9.5618 -3.2220 4.8885 40 1 9.6900 -4.1347 3.3658 41 1 14.0504 -4.6125 5.0602 42 1 5.6335 -1.8077 3.8857 43 1 3.2325 -1.7197 3.4270 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488908992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:23 Heat of formation + Delta-G solvation = -61.218628 kcal Electronic energy + Delta-G solvation = -24033.784739 eV Core-core repulsion = 20464.322088 eV Total energy + Delta-G solvation = -3569.462651 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.95352 -41.19224 -39.28230 -36.92052 -36.33040 -35.79482 -34.44493 -32.18716 -31.35412 -29.62659 -28.16691 -27.99243 -25.91467 -24.38854 -23.80235 -22.66696 -21.95957 -20.11199 -19.82049 -18.87352 -18.39516 -17.58335 -17.06110 -16.65970 -16.52486 -16.08556 -15.95118 -15.67594 -15.38712 -15.07158 -14.82839 -14.58676 -14.42915 -14.38191 -13.96781 -13.80943 -13.57877 -13.21078 -13.04843 -13.01507 -12.93500 -12.73385 -12.60306 -12.27462 -11.94799 -11.86323 -11.67831 -11.57415 -11.53126 -11.16491 -10.92972 -10.48115 -10.08520 -10.06398 -9.14990 -8.40721 -6.47629 -0.42158 0.41835 1.30769 1.32730 1.35779 1.47562 1.62025 2.04318 2.27484 2.81213 2.95130 2.96827 3.27595 3.75069 3.77063 3.90300 3.98213 4.06394 4.28840 4.35150 4.49166 4.52535 4.71611 4.75028 4.77128 4.85004 4.90934 4.98895 5.00080 5.01645 5.10603 5.15976 5.18939 5.26161 5.27425 5.34658 5.35741 5.39874 5.43008 5.53886 5.89361 5.91951 6.19508 6.53279 6.54407 7.02520 7.17642 7.46822 8.73684 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.036592 B = 0.002479 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.012243 B =11293.376673 C =11723.844970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 C -0.147 4.147 4 C -0.149 4.149 5 C 0.405 3.595 6 O -0.499 6.499 7 C -0.205 4.205 8 C -0.045 4.045 9 C -0.151 4.151 10 C 0.195 3.805 11 N -0.670 5.670 12 C 0.693 3.307 13 O -0.620 6.620 14 N -0.710 5.710 15 C 0.250 3.750 16 C -0.545 4.545 17 H 0.063 0.937 18 C 0.028 3.972 19 N -0.929 5.929 20 Si 0.935 3.065 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.261 1.261 24 C -0.159 4.159 25 C -0.055 4.055 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.185 0.815 36 H 0.172 0.828 37 H 0.428 0.572 38 H 0.410 0.590 39 H 0.013 0.987 40 H 0.012 0.988 41 H 0.273 0.727 42 H 0.117 0.883 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.764 14.136 -15.021 29.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.107 4.107 3 C -0.203 4.203 4 C -0.206 4.206 5 C 0.286 3.714 6 O -0.377 6.377 7 C -0.207 4.207 8 C -0.063 4.063 9 C -0.172 4.172 10 C 0.098 3.902 11 N -0.318 5.318 12 C 0.394 3.606 13 O -0.501 6.501 14 N -0.363 5.363 15 C 0.126 3.874 16 C -0.583 4.583 17 H 0.081 0.919 18 C -0.172 4.172 19 N -0.568 5.568 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.199 1.199 23 H -0.185 1.185 24 C -0.180 4.180 25 C -0.074 4.074 26 H 0.066 0.934 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.201 0.799 36 H 0.189 0.811 37 H 0.268 0.732 38 H 0.246 0.754 39 H 0.031 0.969 40 H 0.030 0.970 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.523 12.969 -14.126 29.581 hybrid contribution 0.712 -0.562 0.910 1.285 sum -21.811 12.407 -13.216 28.360 Atomic orbital electron populations 1.21732 0.92698 1.01935 1.02671 1.21122 0.97708 0.98035 0.93863 1.22133 1.02960 0.91855 1.03401 1.22127 1.02436 1.00335 0.95705 1.22973 0.87512 0.75161 0.85712 1.90499 1.59326 1.39254 1.48618 1.20537 0.95468 1.07260 0.97442 1.21746 0.91399 0.94167 0.99014 1.21034 0.97320 1.04161 0.94658 1.18091 0.82005 0.96471 0.93605 1.42357 1.07225 1.23296 1.58959 1.16196 0.82910 0.82182 0.79355 1.90877 1.59570 1.43732 1.55890 1.45113 1.04211 1.28203 1.58803 1.19021 0.92418 0.84799 0.91192 1.21247 0.89889 1.10129 1.37059 0.91885 1.25542 0.95225 1.00552 0.95915 1.69964 1.06066 1.36656 1.44089 0.85900 0.79262 0.79929 0.79053 1.19053 1.19930 1.18495 1.20991 0.92947 1.03446 1.00572 1.21007 0.94792 0.94907 0.96690 0.93438 0.89393 0.93595 0.89773 0.89003 0.93094 0.93120 0.88549 0.90284 0.79883 0.81058 0.73223 0.75425 0.96884 0.96985 0.91818 0.86503 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 7.77 71.98 0.56 -1.30 16 2 C -0.11 -1.42 0.75 -52.93 -0.04 -1.46 16 3 C -0.15 -1.24 8.10 71.98 0.58 -0.66 16 4 C -0.15 -1.40 8.19 71.98 0.59 -0.81 16 5 C 0.41 8.95 5.94 27.94 0.17 9.11 16 6 O -0.50 -14.90 15.98 -3.09 -0.05 -14.95 16 7 C -0.21 -4.52 5.70 -20.14 -0.11 -4.64 16 8 C -0.05 -0.68 7.18 22.33 0.16 -0.52 16 9 C -0.15 -2.44 9.90 22.12 0.22 -2.22 16 10 C 0.20 4.87 6.30 38.43 0.24 5.11 16 11 N -0.67 -16.89 5.31 -317.15 -1.69 -18.57 16 12 C 0.69 25.24 8.40 179.05 1.50 26.74 16 13 O -0.62 -27.92 13.74 -3.95 -0.05 -27.97 16 14 N -0.71 -26.93 5.55 -482.29 -2.68 -29.61 16 15 C 0.25 11.91 4.50 85.63 0.38 12.30 16 16 C -0.55 -29.22 9.83 25.60 0.25 -28.96 16 17 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 18 C 0.03 1.57 5.47 84.66 0.46 2.03 16 19 N -0.93 -54.51 13.96 21.45 0.30 -54.21 16 20 Si 0.93 43.54 27.47 68.60 1.88 45.42 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.26 -12.08 6.54 99.48 0.65 -11.43 16 24 C -0.16 -4.83 8.62 22.12 0.19 -4.64 16 25 C -0.05 -1.54 9.54 22.33 0.21 -1.32 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.04 0.78 8.05 -2.38 -0.02 0.76 16 29 H 0.08 0.50 4.85 -2.38 -0.01 0.49 16 30 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.08 0.62 4.90 -2.39 -0.01 0.61 16 35 H 0.18 1.33 3.52 -2.91 -0.01 1.32 16 36 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.43 7.12 8.83 -92.71 -0.82 6.30 16 38 H 0.41 13.02 8.34 -92.71 -0.77 12.25 16 39 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 40 H 0.01 0.61 7.57 -2.38 -0.02 0.59 16 41 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.12 4.29 6.19 -2.91 -0.02 4.27 16 43 H 0.12 3.50 7.65 -2.91 -0.02 3.47 16 Total: -1.00 -74.81 349.12 2.50 -72.31 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -0.59 Total: 18.83 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 5.37 Total: 8.75 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -4.06 Total: -102.40 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -0.10 Total: -42.92 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Total: -74.81 2.50 -72.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488908992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.093 kcal (2) G-P(sol) polarization free energy of solvation -74.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds