Wall clock time and date at job start Tue Mar 31 2020 08:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46896 * 2 1 4 4 C 1.52995 * 109.47025 * 240.00386 * 2 1 3 5 5 C 1.50694 * 109.47591 * 59.99592 * 4 2 1 6 6 H 1.08008 * 119.99967 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00442 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99703 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00226 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46994 * 60.00192 * 9 7 5 11 11 H 1.48496 * 109.47102 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46930 * 299.99986 * 9 7 5 13 13 C 1.52997 * 109.47323 * 119.99742 * 2 1 3 14 14 N 1.46499 * 109.47551 * 300.00257 * 13 2 1 15 15 C 1.34777 * 120.00195 * 179.97438 * 14 13 2 16 16 O 1.21523 * 119.99913 * 0.02562 * 15 14 13 17 17 C 1.48031 * 119.99651 * 179.97438 * 15 14 13 18 18 C 1.39562 * 119.99586 * 180.02562 * 17 15 14 19 19 C 1.37818 * 119.99778 * 180.02562 * 18 17 15 20 20 C 1.39555 * 120.00461 * 359.97438 * 19 18 17 21 21 C 1.48026 * 120.00315 * 180.02562 * 20 19 18 22 22 N 1.34784 * 120.00099 * 180.02562 * 21 20 19 23 23 O 1.21530 * 120.00052 * 0.02562 * 21 20 19 24 24 C 1.39557 * 119.99716 * 0.28020 * 20 19 18 25 25 C 1.37822 * 119.99836 * 359.46537 * 24 20 19 26 26 H 1.09007 * 109.47068 * 299.99710 * 1 2 3 27 27 H 1.08994 * 109.47444 * 59.99842 * 1 2 3 28 28 H 1.09002 * 109.46442 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47468 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47229 * 300.00348 * 3 2 1 31 31 H 1.08998 * 109.47157 * 60.00030 * 3 2 1 32 32 H 1.09006 * 109.46985 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.47280 * 299.99146 * 4 2 1 34 34 H 0.97003 * 120.00172 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.46910 * 180.02562 * 13 2 1 36 36 H 1.09003 * 109.47114 * 60.00774 * 13 2 1 37 37 H 0.97000 * 119.99484 * 359.97438 * 14 13 2 38 38 H 1.08002 * 120.00296 * 359.97438 * 18 17 15 39 39 H 1.08005 * 119.99830 * 179.97438 * 19 18 17 40 40 H 0.97000 * 119.99339 * 0.02562 * 22 21 20 41 41 H 0.96995 * 120.00015 * 179.72611 * 22 21 20 42 42 H 1.08000 * 120.00072 * 179.70238 * 24 20 19 43 43 H 1.08005 * 120.00046 * 180.23098 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8527 9 14 1.2469 0.3980 -5.2572 10 1 1.7418 1.7981 -5.2578 11 1 1.7420 -0.3019 -6.4697 12 1 -0.2381 0.3979 -5.2566 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8770 -0.4914 3.6695 16 8 2.5757 -1.4794 3.7810 17 6 1.3839 0.2068 4.8782 18 6 1.7212 -0.2700 6.1457 19 6 1.2618 0.3797 7.2710 20 6 0.4598 1.5146 7.1430 21 6 -0.0331 2.2127 8.3517 22 7 -0.8081 3.3085 8.2281 23 8 0.2609 1.7978 9.4555 24 6 0.1182 1.9883 5.8755 25 6 0.5819 1.3417 4.7502 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 -0.7207 -1.2495 33 1 1.6767 -1.7489 -1.2493 34 1 2.8607 -1.8828 -4.7337 35 1 3.1301 -0.7207 1.2494 36 1 1.6768 -1.7489 1.2492 37 1 0.9943 0.7582 2.3564 38 1 2.3415 -1.1486 6.2448 39 1 1.5224 0.0104 8.2519 40 1 -1.0430 3.6394 7.3470 41 1 -1.1344 3.7636 9.0200 42 1 -0.5064 2.8638 5.7765 43 1 0.3207 1.7104 3.7693 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489858223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:23 Heat of formation + Delta-G solvation = -67.785166 kcal Electronic energy + Delta-G solvation = -23940.247419 eV Core-core repulsion = 20370.500021 eV Total energy + Delta-G solvation = -3569.747397 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70831 -39.75900 -38.15124 -37.07088 -34.32437 -33.84539 -32.31540 -31.40578 -31.24754 -27.25266 -26.61566 -26.58776 -24.90110 -23.09501 -22.75821 -21.50877 -20.25321 -19.05978 -18.39963 -17.49979 -17.08129 -16.37984 -15.93463 -15.48419 -15.30702 -15.08593 -14.80195 -14.70824 -14.46070 -13.93875 -13.79442 -13.76726 -13.17356 -12.83439 -12.80966 -12.69015 -12.18129 -12.09559 -11.52826 -11.22937 -11.05514 -10.91419 -10.68690 -10.56787 -10.47241 -10.32180 -10.20006 -10.01749 -9.94178 -9.45160 -9.41833 -9.24304 -8.98774 -8.83264 -8.39361 -6.03399 -4.05116 0.11477 0.93054 2.17952 2.97572 2.99740 3.21731 3.29052 3.35011 3.35889 3.61578 4.24712 4.29368 4.41663 4.47818 4.69047 4.88437 4.99296 5.24685 5.31858 5.41521 5.52395 5.54901 5.66882 5.74085 5.85170 5.96018 6.07982 6.13969 6.21789 6.27304 6.31165 6.36476 6.45420 6.55810 6.66408 6.82098 6.98521 7.00912 7.05565 7.57241 7.60153 7.71229 7.76050 7.94576 8.23564 8.36321 8.99280 9.58115 11.07943 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.031505 B = 0.002473 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.531538 B =11319.145266 C =12011.314977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.127 3.873 14 N -0.713 5.713 15 C 0.546 3.454 16 O -0.535 6.535 17 C -0.098 4.098 18 C -0.069 4.069 19 C -0.066 4.066 20 C -0.123 4.123 21 C 0.564 3.436 22 N -0.850 5.850 23 O -0.537 6.537 24 C -0.093 4.093 25 C -0.096 4.096 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.398 0.602 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.402 0.598 41 H 0.406 0.594 42 H 0.132 0.868 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 10.323 19.991 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.004 3.996 14 N -0.364 5.364 15 C 0.332 3.668 16 O -0.413 6.413 17 C -0.101 4.101 18 C -0.088 4.088 19 C -0.085 4.085 20 C -0.127 4.127 21 C 0.350 3.650 22 N -0.414 5.414 23 O -0.415 6.415 24 C -0.111 4.111 25 C -0.115 4.115 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.234 0.766 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.232 0.768 41 H 0.237 0.763 42 H 0.150 0.850 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.440 9.087 20.519 23.347 hybrid contribution -0.875 1.228 -1.216 1.937 sum -7.315 10.316 19.303 23.077 Atomic orbital electron populations 1.21772 0.95238 1.01278 1.00195 1.20917 0.95493 0.95879 0.95027 1.21772 1.00676 0.95844 1.00197 1.19089 0.96413 0.95250 0.89388 1.21126 1.31345 1.12124 0.90500 0.92320 1.25016 0.95299 0.95072 0.99097 1.69952 1.36787 1.22955 1.23606 0.86704 0.79128 0.79752 0.82666 1.20334 1.21389 1.20329 1.21713 0.99145 0.96146 0.82586 1.46156 1.52735 1.31773 1.05771 1.18283 0.80867 0.84318 0.83346 1.90782 1.37826 1.25966 1.86741 1.20346 0.99034 0.96331 0.94431 1.21336 0.97618 0.99537 0.90338 1.21282 0.94400 0.93098 0.99675 1.20034 1.01652 0.98102 0.92875 1.18332 0.77788 0.80145 0.88780 1.43760 1.54172 1.30719 1.12785 1.90827 1.57602 1.65788 1.27237 1.21185 0.99082 0.99551 0.91307 1.21296 0.96450 0.94526 0.99185 0.95388 0.91309 0.93250 0.93246 0.91314 0.95382 0.96280 0.96279 0.92939 0.91471 0.91466 0.76563 0.83664 0.83905 0.76813 0.76291 0.85000 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.39 16 3 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 4 C 0.04 0.86 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -13.22 7.65 -34.44 -0.26 -13.48 16 6 H 0.06 1.44 5.68 -52.48 -0.30 1.15 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 9 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 C 0.13 2.13 4.56 -4.04 -0.02 2.11 16 14 N -0.71 -9.70 4.91 -61.19 -0.30 -10.00 16 15 C 0.55 7.88 7.78 -12.24 -0.10 7.78 16 16 O -0.54 -9.73 16.33 5.35 0.09 -9.65 16 17 C -0.10 -1.10 5.88 -104.90 -0.62 -1.71 16 18 C -0.07 -0.74 9.58 -39.24 -0.38 -1.12 16 19 C -0.07 -0.64 9.58 -39.24 -0.38 -1.01 16 20 C -0.12 -1.07 5.88 -104.90 -0.62 -1.68 16 21 C 0.56 5.05 8.05 -12.24 -0.10 4.95 16 22 N -0.85 -3.94 8.82 30.57 0.27 -3.67 16 23 O -0.54 -6.93 17.17 5.34 0.09 -6.83 16 24 C -0.09 -0.62 9.53 -39.24 -0.37 -1.00 16 25 C -0.10 -0.79 9.53 -39.24 -0.37 -1.16 16 26 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 27 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.22 6.62 -51.92 -0.34 0.88 16 31 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.40 4.39 4.19 -40.82 -0.17 4.22 16 38 H 0.15 1.56 7.64 -52.49 -0.40 1.16 16 39 H 0.14 1.31 7.64 -52.48 -0.40 0.91 16 40 H 0.40 0.75 6.85 -40.82 -0.28 0.47 16 41 H 0.41 1.40 8.93 -40.82 -0.36 1.04 16 42 H 0.13 0.40 6.39 -52.49 -0.34 0.07 16 43 H 0.13 0.85 6.39 -52.48 -0.34 0.51 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -33.64 353.34 -7.37 -41.01 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.66 Total: 2.43 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.90 Total: -9.13 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.71 Total: -38.89 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.18 Total: -16.48 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.64 -7.37 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489858223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.778 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds