Wall clock time and date at job start Tue Mar 31 2020 08:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46896 * 2 1 4 4 C 1.52995 * 109.47025 * 240.00386 * 2 1 3 5 5 C 1.50694 * 109.47591 * 59.99592 * 4 2 1 6 6 H 1.08008 * 119.99967 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00442 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99703 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00226 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46994 * 60.00192 * 9 7 5 11 11 H 1.48496 * 109.47102 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46930 * 299.99986 * 9 7 5 13 13 C 1.52997 * 109.47323 * 119.99742 * 2 1 3 14 14 N 1.46499 * 109.47551 * 300.00257 * 13 2 1 15 15 C 1.34777 * 120.00195 * 179.97438 * 14 13 2 16 16 O 1.21523 * 119.99913 * 0.02562 * 15 14 13 17 17 C 1.48031 * 119.99651 * 179.97438 * 15 14 13 18 18 C 1.39562 * 119.99586 * 180.02562 * 17 15 14 19 19 C 1.37818 * 119.99778 * 180.02562 * 18 17 15 20 20 C 1.39555 * 120.00461 * 359.97438 * 19 18 17 21 21 C 1.48026 * 120.00315 * 180.02562 * 20 19 18 22 22 N 1.34784 * 120.00099 * 180.02562 * 21 20 19 23 23 O 1.21530 * 120.00052 * 0.02562 * 21 20 19 24 24 C 1.39557 * 119.99716 * 0.28020 * 20 19 18 25 25 C 1.37822 * 119.99836 * 359.46537 * 24 20 19 26 26 H 1.09007 * 109.47068 * 299.99710 * 1 2 3 27 27 H 1.08994 * 109.47444 * 59.99842 * 1 2 3 28 28 H 1.09002 * 109.46442 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47468 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47229 * 300.00348 * 3 2 1 31 31 H 1.08998 * 109.47157 * 60.00030 * 3 2 1 32 32 H 1.09006 * 109.46985 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.47280 * 299.99146 * 4 2 1 34 34 H 0.97003 * 120.00172 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.46910 * 180.02562 * 13 2 1 36 36 H 1.09003 * 109.47114 * 60.00774 * 13 2 1 37 37 H 0.97000 * 119.99484 * 359.97438 * 14 13 2 38 38 H 1.08002 * 120.00296 * 359.97438 * 18 17 15 39 39 H 1.08005 * 119.99830 * 179.97438 * 19 18 17 40 40 H 0.97000 * 119.99339 * 0.02562 * 22 21 20 41 41 H 0.96995 * 120.00015 * 179.72611 * 22 21 20 42 42 H 1.08000 * 120.00072 * 179.70238 * 24 20 19 43 43 H 1.08005 * 120.00046 * 180.23098 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8527 9 14 1.2469 0.3980 -5.2572 10 1 1.7418 1.7981 -5.2578 11 1 1.7420 -0.3019 -6.4697 12 1 -0.2381 0.3979 -5.2566 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8770 -0.4914 3.6695 16 8 2.5757 -1.4794 3.7810 17 6 1.3839 0.2068 4.8782 18 6 1.7212 -0.2700 6.1457 19 6 1.2618 0.3797 7.2710 20 6 0.4598 1.5146 7.1430 21 6 -0.0331 2.2127 8.3517 22 7 -0.8081 3.3085 8.2281 23 8 0.2609 1.7978 9.4555 24 6 0.1182 1.9883 5.8755 25 6 0.5819 1.3417 4.7502 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 -0.7207 -1.2495 33 1 1.6767 -1.7489 -1.2493 34 1 2.8607 -1.8828 -4.7337 35 1 3.1301 -0.7207 1.2494 36 1 1.6768 -1.7489 1.2492 37 1 0.9943 0.7582 2.3564 38 1 2.3415 -1.1486 6.2448 39 1 1.5224 0.0104 8.2519 40 1 -1.0430 3.6394 7.3470 41 1 -1.1344 3.7636 9.0200 42 1 -0.5064 2.8638 5.7765 43 1 0.3207 1.7104 3.7693 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489858223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:22 Heat of formation + Delta-G solvation = -92.325288 kcal Electronic energy + Delta-G solvation = -23941.311558 eV Core-core repulsion = 20370.500021 eV Total energy + Delta-G solvation = -3570.811537 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56375 -40.71895 -39.11777 -38.40425 -35.35278 -34.93611 -34.06112 -32.28217 -31.94288 -29.11122 -27.93115 -27.88118 -25.96304 -24.66224 -23.57487 -22.43056 -21.21381 -20.15453 -19.29664 -18.51080 -18.33485 -17.80595 -17.07636 -16.48213 -16.45239 -16.16245 -15.87221 -15.75450 -15.46633 -15.17315 -14.88562 -14.64268 -14.56185 -14.25685 -13.91244 -13.89494 -13.55918 -13.44123 -12.82115 -12.74022 -12.56011 -12.30153 -12.24177 -12.16680 -11.98475 -11.51684 -11.39593 -11.21400 -10.91367 -10.81970 -10.75601 -10.48798 -10.30117 -10.11529 -9.98272 -8.12053 -6.19865 -0.65049 0.27137 1.36331 1.44436 1.46302 1.53439 2.07576 2.08931 2.45376 2.46549 2.82891 3.22562 3.54546 3.67819 3.85051 3.92039 4.01168 4.09636 4.21063 4.24011 4.29754 4.57161 4.70519 4.73123 4.79114 4.89435 4.98645 5.06614 5.11222 5.15561 5.18944 5.23535 5.36151 5.46565 5.53739 5.55839 5.58998 5.65856 5.82913 5.85476 5.91923 6.31579 6.38602 6.50132 6.95512 7.14022 7.25008 7.47964 9.00231 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.031505 B = 0.002473 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.531538 B =11319.145266 C =12011.314977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.038 3.962 5 C -0.512 4.512 6 H 0.075 0.925 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.266 1.266 11 H -0.294 1.294 12 H -0.266 1.266 13 C 0.139 3.861 14 N -0.698 5.698 15 C 0.546 3.454 16 O -0.583 6.583 17 C -0.115 4.115 18 C -0.080 4.080 19 C -0.075 4.075 20 C -0.123 4.123 21 C 0.561 3.439 22 N -0.825 5.825 23 O -0.586 6.586 24 C -0.074 4.074 25 C -0.086 4.086 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.074 0.926 32 H -0.015 1.015 33 H -0.015 1.015 34 H 0.259 0.741 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.414 0.586 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.419 0.581 41 H 0.415 0.585 42 H 0.180 0.820 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 14.194 20.525 26.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.064 4.064 3 C -0.181 4.181 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.093 0.907 7 C -0.204 4.204 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.220 1.220 12 H -0.191 1.191 13 C 0.015 3.985 14 N -0.351 5.351 15 C 0.335 3.665 16 O -0.464 6.464 17 C -0.118 4.118 18 C -0.099 4.099 19 C -0.094 4.094 20 C -0.127 4.127 21 C 0.347 3.653 22 N -0.389 5.389 23 O -0.467 6.467 24 C -0.092 4.092 25 C -0.104 4.104 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.004 0.996 33 H 0.004 0.996 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.254 0.746 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.252 0.748 41 H 0.247 0.753 42 H 0.198 0.802 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.241 13.042 21.042 26.425 hybrid contribution -0.037 0.046 -1.301 1.302 sum -9.279 13.089 19.741 25.439 Atomic orbital electron populations 1.21720 0.93351 1.01067 1.01917 1.20707 0.96875 0.96377 0.92471 1.21720 0.99952 0.94469 1.01918 1.18985 0.94290 0.94235 0.92438 1.21566 1.30378 1.12106 0.90948 0.90687 1.25966 0.95727 0.95873 1.02789 1.70120 1.38822 1.25027 1.24099 0.85598 0.78986 0.78756 0.78286 1.19069 1.21996 1.19057 1.21291 0.97986 0.95522 0.83660 1.45854 1.52724 1.31964 1.04509 1.18803 0.79839 0.83690 0.84215 1.90762 1.40014 1.28241 1.87404 1.20114 1.01209 0.97980 0.92533 1.21240 0.98166 0.99621 0.90881 1.21260 0.95165 0.93948 0.99056 1.20181 1.01037 0.97514 0.93960 1.18409 0.78009 0.80846 0.88017 1.43574 1.52112 1.28926 1.14324 1.90816 1.59664 1.67360 1.28838 1.21612 0.98026 1.00077 0.89486 1.21595 0.94807 0.92883 1.01120 0.90771 0.92357 0.94533 0.94531 0.92363 0.90766 0.99647 0.99646 0.93252 0.93369 0.93364 0.74569 0.85105 0.84421 0.74764 0.75267 0.80246 0.81838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.77 8.05 71.98 0.58 -3.19 16 2 C -0.06 -2.25 0.54 -52.18 -0.03 -2.28 16 3 C -0.12 -3.77 8.05 71.98 0.58 -3.19 16 4 C 0.04 1.88 4.04 29.84 0.12 2.00 16 5 C -0.51 -26.55 7.65 25.60 0.20 -26.35 16 6 H 0.08 3.58 5.68 -2.91 -0.02 3.56 16 7 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 8 N -0.94 -56.47 13.29 21.45 0.28 -56.19 16 9 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 13 C 0.14 4.72 4.56 86.38 0.39 5.12 16 14 N -0.70 -17.65 4.91 -465.80 -2.29 -19.94 16 15 C 0.55 15.43 7.78 86.84 0.68 16.10 16 16 O -0.58 -22.02 16.33 -3.79 -0.06 -22.09 16 17 C -0.12 -2.38 5.88 -20.04 -0.12 -2.49 16 18 C -0.08 -1.71 9.58 22.49 0.22 -1.50 16 19 C -0.08 -1.42 9.58 22.49 0.22 -1.20 16 20 C -0.12 -1.80 5.88 -20.05 -0.12 -1.92 16 21 C 0.56 8.65 8.05 86.84 0.70 9.34 16 22 N -0.82 -4.37 8.82 -175.47 -1.55 -5.92 16 23 O -0.59 -14.62 17.17 -3.81 -0.07 -14.68 16 24 C -0.07 -0.62 9.53 22.49 0.21 -0.41 16 25 C -0.09 -1.02 9.53 22.49 0.21 -0.81 16 26 H 0.07 1.57 6.86 -2.38 -0.02 1.55 16 27 H 0.06 1.92 6.62 -2.39 -0.02 1.90 16 28 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.92 6.62 -2.38 -0.02 1.90 16 31 H 0.07 1.57 6.86 -2.39 -0.02 1.56 16 32 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 33 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 34 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.41 7.32 4.19 -92.71 -0.39 6.93 16 38 H 0.13 3.06 7.64 -2.91 -0.02 3.04 16 39 H 0.14 2.65 7.64 -2.91 -0.02 2.63 16 40 H 0.42 -0.74 6.85 -92.71 -0.64 -1.38 16 41 H 0.41 1.40 8.93 -92.71 -0.83 0.58 16 42 H 0.18 -0.22 6.39 -2.91 -0.02 -0.24 16 43 H 0.16 0.99 6.39 -2.91 -0.02 0.97 16 Total: -1.00 -78.98 353.34 1.87 -77.11 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -0.78 Total: 7.82 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 4.30 Total: -10.68 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -3.55 Total: -82.05 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.13 Total: -36.77 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -78.98 1.87 -77.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489858223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.218 kcal (2) G-P(sol) polarization free energy of solvation -78.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds