Wall clock time and date at job start Tue Mar 31 2020 09:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35762 * 116.99630 * 2 1 4 4 C 1.39303 * 120.35043 * 180.02562 * 3 2 1 5 5 C 1.38208 * 118.48095 * 179.97438 * 4 3 2 6 6 C 1.39799 * 119.10736 * 0.02562 * 5 4 3 7 7 C 1.47196 * 119.68618 * 180.02562 * 6 5 4 8 8 C 1.34803 * 120.00006 * 185.72370 * 7 6 5 9 9 C 1.46490 * 119.99858 * 31.51928 * 8 7 6 10 10 O 1.21690 * 120.00146 * 8.37473 * 9 8 7 11 11 N 1.34775 * 120.00005 * 188.37878 * 9 8 7 12 12 C 1.46499 * 120.00410 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47625 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.46988 * 300.00310 * 13 12 11 15 15 C 1.52997 * 109.46838 * 60.00045 * 13 12 11 16 16 C 1.50695 * 109.47128 * 180.02562 * 13 12 11 17 17 H 1.07995 * 120.00383 * 0.02562 * 16 13 12 18 18 C 1.37884 * 120.00039 * 180.02562 * 16 13 12 19 19 N 1.31520 * 119.99763 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00170 * 179.97438 * 18 16 13 21 21 H 1.48495 * 109.47204 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47016 * 119.99897 * 20 18 16 23 23 H 1.48505 * 109.47202 * 239.99653 * 20 18 16 24 24 N 1.32987 * 120.61997 * 359.74787 * 6 5 4 25 25 C 1.31438 * 121.65265 * 0.51719 * 24 6 5 26 26 H 1.09003 * 109.46851 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47616 * 300.00418 * 1 2 3 28 28 H 1.08998 * 109.47013 * 60.00451 * 1 2 3 29 29 H 1.08007 * 120.76075 * 0.02562 * 4 3 2 30 30 H 1.08005 * 120.44646 * 180.02562 * 5 4 3 31 31 H 1.08003 * 119.99906 * 5.71945 * 7 6 5 32 32 H 1.07998 * 120.00392 * 211.52715 * 8 7 6 33 33 H 0.97001 * 120.00226 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.47059 * 299.99988 * 12 11 9 35 35 H 1.09006 * 109.46934 * 59.99497 * 12 11 9 36 36 H 1.08999 * 109.47721 * 59.99891 * 14 13 12 37 37 H 1.09003 * 109.46983 * 180.02562 * 14 13 12 38 38 H 1.09003 * 109.47367 * 299.99418 * 14 13 12 39 39 H 1.08997 * 109.47310 * 60.00406 * 15 13 12 40 40 H 1.09001 * 109.47548 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.47400 * 300.00349 * 15 13 12 42 42 H 0.96993 * 119.99953 * 180.02562 * 19 18 16 43 43 H 1.08000 * 119.57609 * 179.75894 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 3.4359 1.2912 -0.0005 5 6 4.0228 2.5425 -0.0011 6 6 3.2057 3.6768 -0.0005 7 6 3.8172 5.0157 -0.0016 8 6 3.0408 6.1115 0.1154 9 6 1.8014 6.0511 0.8939 10 8 1.5479 5.0640 1.5588 11 7 0.9417 7.0889 0.8737 12 6 -0.2976 7.0289 1.6527 13 6 -1.0866 8.3250 1.4567 14 6 -0.2441 9.5114 1.9292 15 6 -1.4239 8.4973 -0.0257 16 6 -2.3610 8.2634 2.2585 17 1 -2.5856 7.3877 2.8493 18 6 -3.2405 9.3252 2.2380 19 7 -2.9668 10.3919 1.5189 20 14 -4.8205 9.2486 3.2313 21 1 -4.8916 7.9505 3.9490 22 1 -4.8404 10.3599 4.2162 23 1 -5.9855 9.3749 2.3190 24 7 1.8812 3.5576 -0.0045 25 6 1.2945 2.3814 0.0010 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.0417 0.3970 -0.0014 30 1 5.0982 2.6426 -0.0019 31 1 4.8880 5.1202 -0.0961 32 1 3.3323 7.0338 -0.3650 33 1 1.1438 7.8760 0.3440 34 1 -0.8976 6.1834 1.3163 35 1 -0.0572 6.9065 2.7089 36 1 0.6779 9.5562 1.3496 37 1 -0.8064 10.4348 1.7899 38 1 -0.0038 9.3887 2.9853 39 1 -2.0242 7.6521 -0.3624 40 1 -1.9857 9.4209 -0.1656 41 1 -0.5019 8.5420 -0.6054 42 1 -3.5853 11.1389 1.5048 43 1 0.2161 2.3236 0.0015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493076295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:51 Heat of formation + Delta-G solvation = 2.008283 kcal Electronic energy + Delta-G solvation = -24584.704735 eV Core-core repulsion = 21017.983808 eV Total energy + Delta-G solvation = -3566.720926 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.63562 -39.11435 -38.09210 -36.24082 -33.44149 -33.06796 -32.41604 -30.82295 -29.52332 -27.58901 -25.81563 -25.66295 -25.14109 -23.98753 -22.88467 -21.52613 -19.25601 -18.63979 -18.26010 -17.40936 -16.82831 -16.00145 -15.84264 -15.44315 -14.95772 -14.56349 -14.50969 -14.22331 -14.01299 -13.77725 -13.51012 -12.95051 -12.84031 -12.78493 -12.47951 -12.13005 -12.08683 -12.03301 -11.63769 -11.31350 -11.14735 -10.83418 -10.63006 -10.32750 -10.16512 -9.83795 -9.61829 -9.56735 -9.41798 -9.21055 -8.98445 -8.71778 -8.37251 -8.07426 -7.82971 -5.98432 -4.08025 0.49101 1.27069 1.94041 3.02088 3.28795 3.37257 3.41981 3.88031 4.01273 4.08123 4.35466 4.44098 4.57827 4.66105 4.82089 4.97375 5.01522 5.22755 5.28197 5.31079 5.34766 5.45749 5.58663 5.82171 5.88572 6.17590 6.31123 6.43116 6.43815 6.50402 6.60495 6.89219 6.90206 7.03398 7.07071 7.09607 7.22132 7.44834 7.61894 7.73758 8.06900 8.10976 8.17401 8.34783 8.44892 8.91809 9.03728 9.57440 11.02973 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.003299 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.481273 B = 8486.472449 C = 9674.011561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.076 3.924 4 C -0.122 4.122 5 C -0.117 4.117 6 C 0.104 3.896 7 C -0.051 4.051 8 C -0.169 4.169 9 C 0.536 3.464 10 O -0.527 6.527 11 N -0.715 5.715 12 C 0.137 3.863 13 C 0.055 3.945 14 C -0.130 4.130 15 C -0.129 4.129 16 C -0.503 4.503 17 H 0.057 0.943 18 C 0.065 3.935 19 N -0.886 5.886 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 N -0.380 5.380 25 C 0.027 3.973 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.395 0.605 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.007 0.993 37 H 0.084 0.916 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.084 0.916 41 H 0.007 0.993 42 H 0.258 0.742 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.018 -13.951 -6.252 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.226 6.226 3 C 0.028 3.972 4 C -0.148 4.148 5 C -0.137 4.137 6 C -0.031 4.031 7 C -0.071 4.071 8 C -0.192 4.192 9 C 0.323 3.677 10 O -0.405 6.405 11 N -0.366 5.366 12 C 0.014 3.986 13 C 0.054 3.946 14 C -0.188 4.188 15 C -0.187 4.187 16 C -0.542 4.542 17 H 0.075 0.925 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 N -0.089 5.089 25 C -0.135 4.135 26 H 0.120 0.880 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.229 0.771 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.103 0.897 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.103 0.897 41 H 0.026 0.974 42 H 0.069 0.931 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.284 -13.934 -5.799 19.460 hybrid contribution -0.556 -0.209 0.361 0.695 sum 11.728 -14.143 -5.439 19.161 Atomic orbital electron populations 1.23134 0.77838 1.04164 1.02037 1.85994 1.21819 1.26405 1.88421 1.20324 0.93295 0.85718 0.97838 1.20714 0.91505 0.98612 1.04005 1.21999 1.00871 0.91648 0.99158 1.19939 0.89106 0.93298 1.00726 1.22001 0.98240 0.89722 0.97163 1.23281 0.97040 0.99699 0.99201 1.18209 0.83357 0.83067 0.83044 1.90746 1.75227 1.31179 1.43308 1.46218 1.21836 1.19201 1.49360 1.21596 0.82983 1.00214 0.93791 1.18353 0.93311 0.89083 0.93814 1.21822 0.96411 1.03007 0.97559 1.21805 0.97852 1.02746 0.96276 1.21044 1.03308 1.02216 1.27615 0.92495 1.24885 0.97983 0.95339 0.95374 1.69820 1.36367 1.05996 1.40334 0.86536 0.83438 0.78035 0.79996 1.19806 1.21093 1.21088 1.67966 1.10700 1.25368 1.04867 1.22971 1.00581 0.86900 1.03040 0.88024 0.92094 0.92280 0.84313 0.84230 0.84157 0.84909 0.77064 0.92969 0.93177 0.97439 0.89694 0.95552 0.95551 0.89745 0.97442 0.93132 0.82775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.82 101.05 0.99 1.19 16 2 O -0.31 -3.63 10.50 -18.99 -0.20 -3.82 16 3 C 0.08 0.98 6.72 -38.85 -0.26 0.72 16 4 C -0.12 -1.39 10.11 -39.20 -0.40 -1.78 16 5 C -0.12 -1.30 9.83 -39.01 -0.38 -1.69 16 6 C 0.10 1.48 6.11 -83.15 -0.51 0.97 16 7 C -0.05 -0.62 9.77 -37.16 -0.36 -0.98 16 8 C -0.17 -2.32 9.89 -37.48 -0.37 -2.69 16 9 C 0.54 9.84 7.00 -12.94 -0.09 9.75 16 10 O -0.53 -11.36 13.20 5.20 0.07 -11.29 16 11 N -0.72 -13.38 4.95 -61.68 -0.31 -13.69 16 12 C 0.14 3.02 4.50 -4.04 -0.02 3.00 16 13 C 0.06 1.30 0.50 -155.67 -0.08 1.23 16 14 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 15 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 16 C -0.50 -13.42 8.01 -34.44 -0.28 -13.70 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.74 5.15 -17.81 -0.09 1.64 16 19 N -0.89 -23.91 9.35 55.43 0.52 -23.39 16 20 Si 0.89 20.95 29.54 -169.99 -5.02 15.92 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 N -0.38 -6.40 6.26 -9.78 -0.06 -6.47 16 25 C 0.03 0.40 10.21 -17.38 -0.18 0.22 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 28 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 29 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 30 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.39 6.67 6.14 -40.82 -0.25 6.42 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 37 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 41 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 42 H 0.26 6.71 8.31 -40.82 -0.34 6.38 16 43 H 0.16 2.08 6.31 -52.49 -0.33 1.75 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -32.12 351.55 -7.19 -39.31 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.07 Total: 5.62 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.42 Total: -7.49 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.15 Total: -43.55 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.13 Total: -15.12 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.12 -7.19 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493076295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.320 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds