Wall clock time and date at job start Tue Mar 31 2020 09:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35762 * 116.99630 * 2 1 4 4 C 1.39303 * 120.35043 * 180.02562 * 3 2 1 5 5 C 1.38208 * 118.48095 * 179.97438 * 4 3 2 6 6 C 1.39799 * 119.10736 * 0.02562 * 5 4 3 7 7 C 1.47196 * 119.68618 * 180.02562 * 6 5 4 8 8 C 1.34803 * 120.00006 * 185.72370 * 7 6 5 9 9 C 1.46490 * 119.99858 * 31.51928 * 8 7 6 10 10 O 1.21690 * 120.00146 * 8.37473 * 9 8 7 11 11 N 1.34775 * 120.00005 * 188.37878 * 9 8 7 12 12 C 1.46499 * 120.00410 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47625 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.46988 * 300.00310 * 13 12 11 15 15 C 1.52997 * 109.46838 * 60.00045 * 13 12 11 16 16 C 1.50695 * 109.47128 * 180.02562 * 13 12 11 17 17 H 1.07995 * 120.00383 * 0.02562 * 16 13 12 18 18 C 1.37884 * 120.00039 * 180.02562 * 16 13 12 19 19 N 1.31520 * 119.99763 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00170 * 179.97438 * 18 16 13 21 21 H 1.48495 * 109.47204 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47016 * 119.99897 * 20 18 16 23 23 H 1.48505 * 109.47202 * 239.99653 * 20 18 16 24 24 N 1.32987 * 120.61997 * 359.74787 * 6 5 4 25 25 C 1.31438 * 121.65265 * 0.51719 * 24 6 5 26 26 H 1.09003 * 109.46851 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47616 * 300.00418 * 1 2 3 28 28 H 1.08998 * 109.47013 * 60.00451 * 1 2 3 29 29 H 1.08007 * 120.76075 * 0.02562 * 4 3 2 30 30 H 1.08005 * 120.44646 * 180.02562 * 5 4 3 31 31 H 1.08003 * 119.99906 * 5.71945 * 7 6 5 32 32 H 1.07998 * 120.00392 * 211.52715 * 8 7 6 33 33 H 0.97001 * 120.00226 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.47059 * 299.99988 * 12 11 9 35 35 H 1.09006 * 109.46934 * 59.99497 * 12 11 9 36 36 H 1.08999 * 109.47721 * 59.99891 * 14 13 12 37 37 H 1.09003 * 109.46983 * 180.02562 * 14 13 12 38 38 H 1.09003 * 109.47367 * 299.99418 * 14 13 12 39 39 H 1.08997 * 109.47310 * 60.00406 * 15 13 12 40 40 H 1.09001 * 109.47548 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.47400 * 300.00349 * 15 13 12 42 42 H 0.96993 * 119.99953 * 180.02562 * 19 18 16 43 43 H 1.08000 * 119.57609 * 179.75894 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 3.4359 1.2912 -0.0005 5 6 4.0228 2.5425 -0.0011 6 6 3.2057 3.6768 -0.0005 7 6 3.8172 5.0157 -0.0016 8 6 3.0408 6.1115 0.1154 9 6 1.8014 6.0511 0.8939 10 8 1.5479 5.0640 1.5588 11 7 0.9417 7.0889 0.8737 12 6 -0.2976 7.0289 1.6527 13 6 -1.0866 8.3250 1.4567 14 6 -0.2441 9.5114 1.9292 15 6 -1.4239 8.4973 -0.0257 16 6 -2.3610 8.2634 2.2585 17 1 -2.5856 7.3877 2.8493 18 6 -3.2405 9.3252 2.2380 19 7 -2.9668 10.3919 1.5189 20 14 -4.8205 9.2486 3.2313 21 1 -4.8916 7.9505 3.9490 22 1 -4.8404 10.3599 4.2162 23 1 -5.9855 9.3749 2.3190 24 7 1.8812 3.5576 -0.0045 25 6 1.2945 2.3814 0.0010 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.0417 0.3970 -0.0014 30 1 5.0982 2.6426 -0.0019 31 1 4.8880 5.1202 -0.0961 32 1 3.3323 7.0338 -0.3650 33 1 1.1438 7.8760 0.3440 34 1 -0.8976 6.1834 1.3163 35 1 -0.0572 6.9065 2.7089 36 1 0.6779 9.5562 1.3496 37 1 -0.8064 10.4348 1.7899 38 1 -0.0038 9.3887 2.9853 39 1 -2.0242 7.6521 -0.3624 40 1 -1.9857 9.4209 -0.1656 41 1 -0.5019 8.5420 -0.6054 42 1 -3.5853 11.1389 1.5048 43 1 0.2161 2.3236 0.0015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493076295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:50 Heat of formation + Delta-G solvation = -18.427133 kcal Electronic energy + Delta-G solvation = -24585.590881 eV Core-core repulsion = 21017.983808 eV Total energy + Delta-G solvation = -3567.607073 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59320 -40.47149 -39.12200 -37.98895 -34.87497 -34.41646 -33.37093 -32.66700 -30.52920 -28.40067 -27.55896 -27.53576 -26.98063 -25.16513 -23.83921 -22.76675 -20.61483 -20.40272 -19.17352 -18.52957 -17.98970 -17.67186 -16.85213 -16.77943 -16.62671 -16.00619 -15.91717 -15.23651 -15.11686 -14.94031 -14.69285 -14.50403 -14.34563 -14.11134 -13.80684 -13.63850 -13.18571 -13.12833 -13.00983 -12.80078 -12.66935 -12.57795 -12.48342 -12.23881 -12.14327 -11.47613 -11.22659 -10.91188 -10.70802 -10.54225 -10.52885 -10.39838 -10.12984 -9.65440 -8.83668 -8.02673 -6.18477 -0.48755 0.33019 0.95978 1.39967 1.43559 1.53462 2.20816 2.42202 2.58940 2.69248 3.01920 3.20333 3.44743 3.64895 3.78327 4.00778 4.20777 4.28803 4.30755 4.41456 4.49788 4.54335 4.59355 4.66121 4.72654 4.73828 4.91502 4.99582 5.02331 5.07160 5.13369 5.20759 5.28407 5.41169 5.46222 5.61895 5.66525 5.67680 5.74619 6.15419 6.17828 6.22616 6.44185 6.85873 6.92331 7.13022 7.49054 7.63604 8.96490 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.003299 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.481273 B = 8486.472449 C = 9674.011561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.320 6.320 3 C 0.075 3.925 4 C -0.127 4.127 5 C -0.098 4.098 6 C 0.065 3.935 7 C -0.023 4.023 8 C -0.199 4.199 9 C 0.530 3.470 10 O -0.567 6.567 11 N -0.714 5.714 12 C 0.157 3.843 13 C 0.052 3.948 14 C -0.119 4.119 15 C -0.117 4.117 16 C -0.529 4.529 17 H 0.040 0.960 18 C 0.028 3.972 19 N -0.899 5.899 20 Si 0.946 3.054 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.280 1.280 24 N -0.422 5.422 25 C -0.004 4.004 26 H 0.130 0.870 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.169 0.831 30 H 0.186 0.814 31 H 0.194 0.806 32 H 0.169 0.831 33 H 0.405 0.595 34 H 0.028 0.972 35 H 0.029 0.971 36 H 0.038 0.962 37 H 0.063 0.937 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.063 0.937 41 H 0.036 0.964 42 H 0.260 0.740 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.632 -14.658 -7.111 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.232 6.232 3 C 0.027 3.973 4 C -0.153 4.153 5 C -0.117 4.117 6 C -0.070 4.070 7 C -0.043 4.043 8 C -0.221 4.221 9 C 0.320 3.680 10 O -0.447 6.447 11 N -0.365 5.365 12 C 0.033 3.967 13 C 0.051 3.949 14 C -0.177 4.177 15 C -0.175 4.175 16 C -0.567 4.567 17 H 0.059 0.941 18 C -0.172 4.172 19 N -0.538 5.538 20 Si 0.772 3.228 21 H -0.202 1.202 22 H -0.205 1.205 23 H -0.206 1.206 24 N -0.132 5.132 25 C -0.165 4.165 26 H 0.148 0.852 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.187 0.813 30 H 0.203 0.797 31 H 0.211 0.789 32 H 0.187 0.813 33 H 0.241 0.759 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.033 0.967 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 14.904 -14.634 -6.679 21.929 hybrid contribution -1.341 -0.156 0.617 1.484 sum 13.563 -14.790 -6.063 20.964 Atomic orbital electron populations 1.23355 0.76483 1.05961 1.01907 1.85987 1.23273 1.25782 1.88137 1.20493 0.94224 0.85454 0.97141 1.21194 0.90968 1.00100 1.03002 1.22471 1.02796 0.90344 0.96073 1.20564 0.88810 0.95539 1.02094 1.22687 1.00370 0.88110 0.93101 1.23262 0.94918 1.02324 1.01602 1.19051 0.84221 0.81824 0.82871 1.90728 1.76450 1.32442 1.45128 1.46064 1.20904 1.20206 1.49364 1.21072 0.84190 0.98436 0.93019 1.18346 0.92697 0.90039 0.93828 1.21655 0.97254 1.01314 0.97481 1.21636 0.98719 1.00960 0.96204 1.21304 1.05126 1.01952 1.28346 0.94119 1.25464 1.00369 0.95113 0.96239 1.69916 1.37028 1.06158 1.40696 0.85699 0.80447 0.77769 0.78851 1.20172 1.20539 1.20554 1.67855 1.12745 1.26497 1.06056 1.22978 1.00770 0.87644 1.05098 0.85183 0.92828 0.91921 0.81325 0.79664 0.78857 0.81331 0.75860 0.95406 0.95266 0.94307 0.91844 0.96488 0.96727 0.91843 0.94514 0.92996 0.83505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.82 113.37 1.11 1.40 16 2 O -0.32 -7.16 10.50 -90.88 -0.95 -8.11 16 3 C 0.07 1.89 6.72 22.75 0.15 2.05 16 4 C -0.13 -2.55 10.11 22.52 0.23 -2.32 16 5 C -0.10 -1.83 9.83 22.64 0.22 -1.61 16 6 C 0.06 1.73 6.11 41.70 0.25 1.98 16 7 C -0.02 -0.48 9.77 23.84 0.23 -0.25 16 8 C -0.20 -4.98 9.89 23.63 0.23 -4.75 16 9 C 0.53 19.44 7.00 86.39 0.60 20.04 16 10 O -0.57 -25.20 13.20 -4.32 -0.06 -25.25 16 11 N -0.71 -26.74 4.95 -467.28 -2.31 -29.06 16 12 C 0.16 7.20 4.50 86.38 0.39 7.59 16 13 C 0.05 2.49 0.50 -52.93 -0.03 2.47 16 14 C -0.12 -5.49 8.08 71.98 0.58 -4.91 16 15 C -0.12 -5.46 8.08 71.98 0.58 -4.88 16 16 C -0.53 -29.06 8.01 25.60 0.21 -28.85 16 17 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 18 C 0.03 1.50 5.15 84.66 0.44 1.94 16 19 N -0.90 -48.93 9.35 21.45 0.20 -48.73 16 20 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 N -0.42 -14.42 6.26 -184.85 -1.16 -15.58 16 25 C 0.00 -0.12 10.21 84.97 0.87 0.75 16 26 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 0.97 7.67 -2.39 -0.02 0.95 16 28 H 0.06 0.99 7.67 -2.39 -0.02 0.97 16 29 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 31 H 0.19 1.84 8.06 -2.91 -0.02 1.81 16 32 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.40 13.19 6.14 -92.71 -0.57 12.62 16 34 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.04 1.49 6.86 -2.39 -0.02 1.48 16 37 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 38 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 41 H 0.04 1.44 6.86 -2.39 -0.02 1.43 16 42 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 43 H 0.15 4.37 6.31 -2.91 -0.02 4.35 16 Total: -1.00 -73.24 351.55 4.27 -68.98 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.45 Total: 21.53 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 6.08 Total: -9.35 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -3.27 Total: -93.36 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -1.01 Total: -33.37 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -73.24 4.27 -68.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493076295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.548 kcal (2) G-P(sol) polarization free energy of solvation -73.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds