Wall clock time and date at job start Tue Mar 31 2020 09:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46977 * 2 1 4 4 C 1.53000 * 109.46962 * 240.00264 * 2 1 3 5 5 N 1.46904 * 109.47239 * 299.99602 * 4 2 1 6 6 N 1.46500 * 109.47270 * 120.00085 * 2 1 3 7 7 C 1.34776 * 119.99786 * 300.00476 * 6 2 1 8 8 O 1.21722 * 120.00523 * 359.97438 * 7 6 2 9 9 C 1.46261 * 119.99810 * 180.27920 * 7 6 2 10 10 C 1.35019 * 120.00169 * 179.72391 * 9 7 6 11 11 C 1.46959 * 120.00209 * 179.97438 * 10 9 7 12 12 C 1.40017 * 120.10027 * 359.71653 * 11 10 9 13 13 C 1.37600 * 119.89871 * 179.76963 * 12 11 10 14 14 C 1.39173 * 120.09945 * 0.50997 * 13 12 11 15 15 O 1.35570 * 119.89967 * 179.76472 * 14 13 12 16 16 C 1.34788 * 117.00091 * 174.42353 * 15 14 13 17 17 H 1.07991 * 119.99907 * 5.05912 * 16 15 14 18 18 C 1.38714 * 119.99689 * 185.05654 * 16 15 14 19 19 N 1.31507 * 120.00463 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47342 * 59.99861 * 20 18 16 22 22 H 1.48499 * 109.47262 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46907 * 299.99985 * 20 18 16 24 24 C 1.39180 * 120.20294 * 359.74773 * 14 13 12 25 25 C 1.37600 * 120.10236 * 359.97438 * 24 14 13 26 26 H 1.08994 * 109.47179 * 299.99565 * 1 2 3 27 27 H 1.08994 * 109.47523 * 60.00246 * 1 2 3 28 28 H 1.09009 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46924 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.46793 * 300.00201 * 3 2 1 31 31 H 1.09008 * 109.46843 * 60.00170 * 3 2 1 32 32 H 1.08994 * 109.47423 * 59.99984 * 4 2 1 33 33 H 1.09007 * 109.46873 * 179.97438 * 4 2 1 34 34 H 1.00897 * 110.99383 * 56.04366 * 5 4 2 35 35 H 1.00893 * 110.99835 * 180.02562 * 5 4 2 36 36 H 0.96999 * 120.00112 * 119.99958 * 6 2 1 37 37 H 1.08000 * 119.99984 * 359.71397 * 9 7 6 38 38 H 1.08000 * 119.99847 * 359.97438 * 10 9 7 39 39 H 1.08005 * 120.04922 * 0.02969 * 12 11 10 40 40 H 1.08005 * 119.95289 * 180.23375 * 13 12 11 41 41 H 0.96998 * 120.00154 * 179.97438 * 19 18 16 42 42 H 1.08007 * 119.94868 * 179.97438 * 24 14 13 43 43 H 1.07997 * 120.05056 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5503 -2.1062 -1.2493 6 7 2.0184 -0.6906 1.1961 7 6 1.6927 -0.2302 2.4202 8 8 0.9932 0.7597 2.5320 9 6 2.1853 -0.9161 3.6144 10 6 1.8637 -0.4517 4.8408 11 6 2.3581 -1.1412 6.0407 12 6 3.1581 -2.2834 5.9147 13 6 3.6227 -2.9230 7.0409 14 6 3.2900 -2.4424 8.3039 15 8 3.7461 -3.0785 9.4108 16 6 3.4863 -2.4996 10.6000 17 1 2.8683 -1.6152 10.6465 18 6 4.0129 -3.0398 11.7640 19 7 4.7651 -4.1170 11.7075 20 14 3.6524 -2.2379 13.4122 21 1 2.1866 -2.2327 13.6502 22 1 4.3270 -3.0016 14.4924 23 1 4.1574 -0.8414 13.4043 24 6 2.4907 -1.3104 8.4341 25 6 2.0262 -0.6610 7.3134 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9564 0.8901 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 0.5439 -2.1339 -1.1843 35 1 1.8742 -2.6042 -2.0649 36 1 2.5760 -1.4793 1.1071 37 1 2.8062 -1.7942 3.5153 38 1 1.2430 0.4266 4.9399 39 1 3.4135 -2.6594 4.9349 40 1 4.2429 -3.8020 6.9447 41 1 5.1336 -4.4945 12.5215 42 1 2.2346 -0.9412 9.4162 43 1 1.4063 0.2175 7.4154 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493760083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:04 Heat of formation + Delta-G solvation = -28.415119 kcal Electronic energy + Delta-G solvation = -23480.122004 eV Core-core repulsion = 19912.081820 eV Total energy + Delta-G solvation = -3568.040184 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.07700 -39.13891 -37.32223 -36.69512 -33.29697 -33.17694 -32.30464 -31.25455 -30.39096 -28.06228 -27.51322 -25.67129 -25.28061 -23.47401 -22.15462 -21.05914 -19.52452 -19.26140 -18.14570 -17.17574 -17.03411 -16.45162 -15.83106 -15.01978 -14.83565 -14.75767 -14.51672 -14.40807 -14.03328 -13.79785 -13.77926 -13.34306 -13.18117 -12.99295 -12.67399 -12.54224 -12.23029 -12.04741 -11.88893 -11.72253 -11.67424 -11.35840 -11.16136 -11.08014 -11.00663 -10.66732 -10.51732 -9.54246 -9.50298 -9.46624 -9.12920 -8.98971 -8.80467 -8.34687 -7.07155 -6.62295 -4.17439 1.14093 2.16767 2.61901 3.05664 3.07578 3.09622 3.29769 3.66326 3.84552 4.14379 4.45947 4.54580 4.71547 4.88958 4.95254 5.07035 5.08686 5.14147 5.32376 5.33244 5.48470 5.53218 5.57908 5.65525 5.71446 5.74092 5.75491 6.04812 6.10905 6.17054 6.20423 6.49498 6.55123 6.58971 6.65275 6.72973 6.83242 6.95302 6.98523 7.16666 7.27326 7.32274 7.67521 7.76156 7.82981 8.49164 8.82415 9.49814 10.54364 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.038993 B = 0.002160 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.913170 B =12961.727815 C =13437.580045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.177 3.823 3 C -0.165 4.165 4 C 0.058 3.942 5 N -0.850 5.850 6 N -0.714 5.714 7 C 0.557 3.443 8 O -0.560 6.560 9 C -0.279 4.279 10 C 0.034 3.966 11 C -0.197 4.197 12 C -0.043 4.043 13 C -0.199 4.199 14 C 0.166 3.834 15 O -0.163 6.163 16 C -0.393 4.393 17 H 0.096 0.904 18 C 0.041 3.959 19 N -0.853 5.853 20 Si 0.944 3.056 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.268 1.268 24 C -0.242 4.242 25 C -0.036 4.036 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.344 0.656 35 H 0.343 0.657 36 H 0.405 0.595 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.274 0.726 42 H 0.131 0.869 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.990 5.760 -21.537 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.090 3.910 3 C -0.223 4.223 4 C -0.073 4.073 5 N -0.381 5.381 6 N -0.366 5.366 7 C 0.349 3.651 8 O -0.441 6.441 9 C -0.300 4.300 10 C 0.014 3.986 11 C -0.198 4.198 12 C -0.062 4.062 13 C -0.219 4.219 14 C 0.110 3.890 15 O -0.064 6.064 16 C -0.469 4.469 17 H 0.114 0.886 18 C -0.165 4.165 19 N -0.486 5.486 20 Si 0.768 3.232 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.193 1.193 24 C -0.261 4.261 25 C -0.055 4.055 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.240 0.760 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.084 0.916 42 H 0.148 0.852 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.784 5.979 -20.577 21.956 hybrid contribution -0.351 0.195 -0.173 0.437 sum -5.135 6.173 -20.750 22.249 Atomic orbital electron populations 1.22248 0.94683 1.02118 1.03478 1.20233 0.94236 0.92053 0.84469 1.22221 1.01020 0.95513 1.03584 1.22075 1.00570 0.88884 0.95807 1.58683 1.17036 1.14243 1.48159 1.45836 1.54152 1.32053 1.04536 1.18366 0.79479 0.83673 0.83608 1.90694 1.39316 1.26967 1.87150 1.22491 1.10432 1.05034 0.92033 1.22256 0.90460 0.94748 0.91148 1.18478 1.08530 1.00542 0.92218 1.20891 0.94553 0.93550 0.97182 1.20153 1.07737 1.04140 0.89835 1.19611 0.91085 0.90213 0.88086 1.83905 1.65683 1.44553 1.12291 1.21416 1.32502 1.12162 0.80815 0.88628 1.25384 0.95539 0.96154 0.99387 1.70003 1.29552 1.19209 1.29828 0.85721 0.79076 0.79027 0.79343 1.19270 1.20110 1.19268 1.21100 1.05858 0.99897 0.99293 1.20984 0.95852 0.97229 0.91398 0.89812 0.92574 0.92462 0.92662 0.92308 0.89744 0.94163 0.90367 0.84223 0.84484 0.76019 0.86032 0.86011 0.86391 0.86157 0.91582 0.85164 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 8.07 37.16 0.30 -1.31 16 2 C 0.18 1.63 0.83 -131.82 -0.11 1.53 16 3 C -0.16 -1.60 8.40 37.16 0.31 -1.29 16 4 C 0.06 0.39 5.78 -3.82 -0.02 0.37 16 5 N -0.85 -5.24 9.28 -10.37 -0.10 -5.33 16 6 N -0.71 -7.67 4.97 -49.03 -0.24 -7.91 16 7 C 0.56 7.75 7.15 -13.04 -0.09 7.65 16 8 O -0.56 -9.22 12.43 5.17 0.06 -9.15 16 9 C -0.28 -3.90 9.41 -37.50 -0.35 -4.26 16 10 C 0.03 0.52 9.45 -37.19 -0.35 0.17 16 11 C -0.20 -3.41 5.87 -105.03 -0.62 -4.03 16 12 C -0.04 -0.76 9.40 -39.15 -0.37 -1.13 16 13 C -0.20 -4.05 9.97 -39.47 -0.39 -4.44 16 14 C 0.17 3.87 6.66 -38.88 -0.26 3.61 16 15 O -0.16 -4.47 9.74 0.72 0.01 -4.46 16 16 C -0.39 -10.54 9.48 30.91 0.29 -10.25 16 17 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 18 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 19 N -0.85 -24.04 13.67 55.48 0.76 -23.28 16 20 Si 0.94 19.67 29.55 -169.99 -5.02 14.64 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.24 -5.08 9.14 -39.46 -0.36 -5.44 16 25 C -0.04 -0.66 9.78 -39.15 -0.38 -1.04 16 26 H 0.08 1.06 6.16 -51.93 -0.32 0.74 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.52 6.57 -51.92 -0.34 0.18 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 1.06 6.16 -51.92 -0.32 0.74 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16 34 H 0.34 2.08 7.03 -39.29 -0.28 1.80 16 35 H 0.34 1.52 9.08 -39.30 -0.36 1.16 16 36 H 0.40 3.85 8.29 -40.82 -0.34 3.51 16 37 H 0.12 1.51 6.07 -52.49 -0.32 1.19 16 38 H 0.12 1.86 7.52 -52.49 -0.39 1.47 16 39 H 0.12 1.70 6.16 -52.48 -0.32 1.37 16 40 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 41 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.13 2.69 5.62 -52.48 -0.29 2.40 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 354.85 15.07 5.35 5.35 Total: -1.00 -30.26 354.85 -7.34 -37.60 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -5.65 Total: 11.41 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -2.50 Total: -18.85 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.42 Total: -36.53 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.07 Total: -13.62 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.26 -7.34 -37.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493760083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.180 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds