Wall clock time and date at job start Tue Mar 31 2020 09:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46977 * 2 1 4 4 C 1.53000 * 109.46962 * 240.00264 * 2 1 3 5 5 N 1.46904 * 109.47239 * 299.99602 * 4 2 1 6 6 N 1.46500 * 109.47270 * 120.00085 * 2 1 3 7 7 C 1.34776 * 119.99786 * 300.00476 * 6 2 1 8 8 O 1.21722 * 120.00523 * 359.97438 * 7 6 2 9 9 C 1.46261 * 119.99810 * 180.27920 * 7 6 2 10 10 C 1.35019 * 120.00169 * 179.72391 * 9 7 6 11 11 C 1.46959 * 120.00209 * 179.97438 * 10 9 7 12 12 C 1.40017 * 120.10027 * 359.71653 * 11 10 9 13 13 C 1.37600 * 119.89871 * 179.76963 * 12 11 10 14 14 C 1.39173 * 120.09945 * 0.50997 * 13 12 11 15 15 O 1.35570 * 119.89967 * 179.76472 * 14 13 12 16 16 C 1.34788 * 117.00091 * 174.42353 * 15 14 13 17 17 H 1.07991 * 119.99907 * 5.05912 * 16 15 14 18 18 C 1.38714 * 119.99689 * 185.05654 * 16 15 14 19 19 N 1.31507 * 120.00463 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47342 * 59.99861 * 20 18 16 22 22 H 1.48499 * 109.47262 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46907 * 299.99985 * 20 18 16 24 24 C 1.39180 * 120.20294 * 359.74773 * 14 13 12 25 25 C 1.37600 * 120.10236 * 359.97438 * 24 14 13 26 26 H 1.08994 * 109.47179 * 299.99565 * 1 2 3 27 27 H 1.08994 * 109.47523 * 60.00246 * 1 2 3 28 28 H 1.09009 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46924 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.46793 * 300.00201 * 3 2 1 31 31 H 1.09008 * 109.46843 * 60.00170 * 3 2 1 32 32 H 1.08994 * 109.47423 * 59.99984 * 4 2 1 33 33 H 1.09007 * 109.46873 * 179.97438 * 4 2 1 34 34 H 1.00897 * 110.99383 * 56.04366 * 5 4 2 35 35 H 1.00893 * 110.99835 * 180.02562 * 5 4 2 36 36 H 0.96999 * 120.00112 * 119.99958 * 6 2 1 37 37 H 1.08000 * 119.99984 * 359.71397 * 9 7 6 38 38 H 1.08000 * 119.99847 * 359.97438 * 10 9 7 39 39 H 1.08005 * 120.04922 * 0.02969 * 12 11 10 40 40 H 1.08005 * 119.95289 * 180.23375 * 13 12 11 41 41 H 0.96998 * 120.00154 * 179.97438 * 19 18 16 42 42 H 1.08007 * 119.94868 * 179.97438 * 24 14 13 43 43 H 1.07997 * 120.05056 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5503 -2.1062 -1.2493 6 7 2.0184 -0.6906 1.1961 7 6 1.6927 -0.2302 2.4202 8 8 0.9932 0.7597 2.5320 9 6 2.1853 -0.9161 3.6144 10 6 1.8637 -0.4517 4.8408 11 6 2.3581 -1.1412 6.0407 12 6 3.1581 -2.2834 5.9147 13 6 3.6227 -2.9230 7.0409 14 6 3.2900 -2.4424 8.3039 15 8 3.7461 -3.0785 9.4108 16 6 3.4863 -2.4996 10.6000 17 1 2.8683 -1.6152 10.6465 18 6 4.0129 -3.0398 11.7640 19 7 4.7651 -4.1170 11.7075 20 14 3.6524 -2.2379 13.4122 21 1 2.1866 -2.2327 13.6502 22 1 4.3270 -3.0016 14.4924 23 1 4.1574 -0.8414 13.4043 24 6 2.4907 -1.3104 8.4341 25 6 2.0262 -0.6610 7.3134 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9564 0.8901 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 0.5439 -2.1339 -1.1843 35 1 1.8742 -2.6042 -2.0649 36 1 2.5760 -1.4793 1.1071 37 1 2.8062 -1.7942 3.5153 38 1 1.2430 0.4266 4.9399 39 1 3.4135 -2.6594 4.9349 40 1 4.2429 -3.8020 6.9447 41 1 5.1336 -4.4945 12.5215 42 1 2.2346 -0.9412 9.4162 43 1 1.4063 0.2175 7.4154 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493760083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:03 Heat of formation + Delta-G solvation = -49.805892 kcal Electronic energy + Delta-G solvation = -23481.049578 eV Core-core repulsion = 19912.081820 eV Total energy + Delta-G solvation = -3568.967758 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.10948 -40.76777 -38.61974 -37.90775 -34.71163 -34.09183 -33.93475 -32.16014 -31.94293 -29.52126 -28.26735 -27.49555 -25.94322 -24.76621 -23.70614 -22.37184 -20.64405 -20.40043 -19.72335 -18.82068 -18.24278 -17.25361 -16.59877 -16.44279 -16.30464 -15.97683 -15.77363 -15.59481 -15.46656 -15.13825 -14.93031 -14.57848 -14.32439 -14.08709 -13.95375 -13.58551 -13.39400 -13.30038 -13.12085 -12.98219 -12.81486 -12.66114 -12.53561 -12.22433 -12.14558 -12.10921 -11.85767 -11.20698 -11.07738 -10.59047 -10.54018 -9.93157 -9.88304 -9.58886 -8.65682 -8.51251 -6.17571 -0.20113 0.59253 1.18055 1.35949 1.48039 1.51798 2.16054 2.37284 2.45683 2.87833 3.19077 3.43483 3.58336 3.82003 3.91154 3.96588 4.05240 4.09836 4.18832 4.33822 4.39744 4.49425 4.59464 4.67330 4.70969 4.79830 4.82316 4.93601 4.96013 4.99167 5.04425 5.20797 5.26028 5.35723 5.38558 5.41753 5.60619 5.64683 5.74305 5.84390 5.98052 6.11765 6.22644 6.60168 6.79521 6.92862 7.44095 7.70244 8.70622 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.038993 B = 0.002160 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.913170 B =12961.727815 C =13437.580045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.171 3.829 3 C -0.162 4.162 4 C 0.066 3.934 5 N -0.856 5.856 6 N -0.699 5.699 7 C 0.549 3.451 8 O -0.585 6.585 9 C -0.244 4.244 10 C 0.011 3.989 11 C -0.169 4.169 12 C -0.039 4.039 13 C -0.207 4.207 14 C 0.129 3.871 15 O -0.220 6.220 16 C -0.418 4.418 17 H 0.105 0.895 18 C -0.019 4.019 19 N -0.914 5.914 20 Si 1.018 2.982 21 H -0.257 1.257 22 H -0.271 1.271 23 H -0.257 1.257 24 C -0.249 4.249 25 C -0.041 4.041 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.345 0.655 35 H 0.354 0.646 36 H 0.414 0.586 37 H 0.145 0.855 38 H 0.125 0.875 39 H 0.158 0.842 40 H 0.122 0.878 41 H 0.275 0.725 42 H 0.125 0.875 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 7.006 -25.069 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.085 3.915 3 C -0.221 4.221 4 C -0.065 4.065 5 N -0.389 5.389 6 N -0.350 5.350 7 C 0.340 3.660 8 O -0.468 6.468 9 C -0.265 4.265 10 C -0.009 4.009 11 C -0.170 4.170 12 C -0.057 4.057 13 C -0.226 4.226 14 C 0.077 3.923 15 O -0.125 6.125 16 C -0.493 4.493 17 H 0.123 0.877 18 C -0.218 4.218 19 N -0.551 5.551 20 Si 0.837 3.163 21 H -0.181 1.181 22 H -0.196 1.196 23 H -0.181 1.181 24 C -0.268 4.268 25 C -0.059 4.059 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.159 0.841 35 H 0.168 0.832 36 H 0.250 0.750 37 H 0.163 0.837 38 H 0.142 0.858 39 H 0.175 0.825 40 H 0.140 0.860 41 H 0.084 0.916 42 H 0.143 0.857 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.664 7.238 -24.204 25.890 hybrid contribution -0.231 -0.019 0.260 0.348 sum -5.895 7.219 -23.945 25.695 Atomic orbital electron populations 1.22187 0.94910 1.02228 1.02797 1.20438 0.94099 0.92134 0.84868 1.22170 1.01232 0.95663 1.03003 1.21976 1.00799 0.89071 0.94685 1.58667 1.17194 1.13990 1.49055 1.45803 1.53110 1.31884 1.04163 1.18441 0.79537 0.83505 0.84552 1.90714 1.40385 1.28092 1.87622 1.22841 1.07713 1.04277 0.91631 1.22133 0.92329 0.95678 0.90768 1.18803 1.05973 0.99434 0.92749 1.21275 0.93551 0.92992 0.97876 1.20415 1.07893 1.04511 0.89754 1.20177 0.92252 0.91570 0.88329 1.83886 1.68804 1.46621 1.13191 1.21856 1.33188 1.12837 0.81443 0.87748 1.26616 0.95213 0.96702 1.03242 1.70142 1.32452 1.21694 1.30796 0.84648 0.79349 0.78199 0.74070 1.18095 1.19585 1.18149 1.21205 1.05762 0.99578 1.00232 1.21310 0.95890 0.97953 0.90793 0.93043 0.90699 0.91940 0.92235 0.90367 0.92870 0.92548 0.89840 0.84124 0.83190 0.74954 0.83701 0.85752 0.82463 0.85974 0.91594 0.85726 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 8.07 71.98 0.58 -2.14 16 2 C 0.17 2.62 0.83 3.60 0.00 2.62 16 3 C -0.16 -2.73 8.40 71.98 0.60 -2.13 16 4 C 0.07 0.62 5.78 86.30 0.50 1.12 16 5 N -0.86 -7.37 9.28 -186.71 -1.73 -9.10 16 6 N -0.70 -12.61 4.97 -427.23 -2.12 -14.73 16 7 C 0.55 13.61 7.15 86.33 0.62 14.23 16 8 O -0.58 -18.19 12.43 -4.42 -0.05 -18.24 16 9 C -0.24 -5.85 9.41 23.62 0.22 -5.62 16 10 C 0.01 0.30 9.45 23.82 0.23 0.52 16 11 C -0.17 -5.41 5.87 -20.13 -0.12 -5.52 16 12 C -0.04 -1.27 9.40 22.55 0.21 -1.06 16 13 C -0.21 -8.41 9.97 22.34 0.22 -8.19 16 14 C 0.13 6.23 6.66 22.72 0.15 6.38 16 15 O -0.22 -12.87 9.74 -20.34 -0.20 -13.07 16 16 C -0.42 -23.70 9.48 67.93 0.64 -23.06 16 17 H 0.11 5.41 5.18 -2.92 -0.02 5.40 16 18 C -0.02 -1.06 5.49 84.86 0.47 -0.59 16 19 N -0.91 -54.79 13.67 21.62 0.30 -54.49 16 20 Si 1.02 41.80 29.55 68.60 2.03 43.82 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 24 C -0.25 -10.59 9.14 22.35 0.20 -10.39 16 25 C -0.04 -1.44 9.78 22.55 0.22 -1.22 16 26 H 0.05 1.22 6.16 -2.39 -0.01 1.21 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 0.96 6.57 -2.38 -0.02 0.95 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 1.26 6.16 -2.38 -0.01 1.25 16 32 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.34 2.96 7.03 -89.70 -0.63 2.33 16 35 H 0.35 1.84 9.08 -89.70 -0.81 1.03 16 36 H 0.41 6.11 8.29 -92.71 -0.77 5.34 16 37 H 0.15 2.80 6.07 -2.91 -0.02 2.78 16 38 H 0.12 3.47 7.52 -2.91 -0.02 3.45 16 39 H 0.16 3.79 6.16 -2.91 -0.02 3.77 16 40 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 41 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 42 H 0.13 5.35 5.62 -2.91 -0.02 5.33 16 43 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -71.20 354.85 1.83 -69.37 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -1.14 Total: 31.48 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 4.76 Total: -35.04 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -3.56 Total: -78.33 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.25 Total: -31.31 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -71.20 1.83 -69.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493760083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.567 kcal (2) G-P(sol) polarization free energy of solvation -71.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds