Wall clock time and date at job start Tue Mar 31 2020 09:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47032 * 2 1 4 4 C 1.52998 * 109.47116 * 240.00161 * 2 1 3 5 5 N 1.46906 * 109.47031 * 299.99596 * 4 2 1 6 6 N 1.46503 * 109.47519 * 120.00041 * 2 1 3 7 7 C 1.34774 * 119.99682 * 300.00282 * 6 2 1 8 8 O 1.21727 * 120.00011 * 359.97438 * 7 6 2 9 9 C 1.46252 * 120.00082 * 180.02562 * 7 6 2 10 10 C 1.35023 * 120.00058 * 186.63870 * 9 7 6 11 11 C 1.46963 * 120.00405 * 13.80289 * 10 9 7 12 12 C 1.40022 * 120.09443 * 39.76301 * 11 10 9 13 13 C 1.37598 * 119.89450 * 180.02562 * 12 11 10 14 14 C 1.39170 * 120.10514 * 0.25281 * 13 12 11 15 15 O 1.35569 * 119.90184 * 179.72182 * 14 13 12 16 16 C 1.34777 * 117.00196 * 353.54601 * 15 14 13 17 17 H 1.07999 * 119.99722 * 5.12258 * 16 15 14 18 18 C 1.38716 * 120.00268 * 185.12354 * 16 15 14 19 19 N 1.31503 * 119.99888 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99962 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47200 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46945 * 120.00532 * 20 18 16 23 23 H 1.48505 * 109.47047 * 240.00292 * 20 18 16 24 24 C 1.39186 * 120.19957 * 359.49189 * 14 13 12 25 25 C 1.37597 * 120.09940 * 0.50767 * 24 14 13 26 26 H 1.08996 * 109.47109 * 299.99915 * 1 2 3 27 27 H 1.08994 * 109.46801 * 60.00115 * 1 2 3 28 28 H 1.09002 * 109.46590 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46805 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46814 * 300.00022 * 3 2 1 31 31 H 1.08996 * 109.47104 * 60.00082 * 3 2 1 32 32 H 1.08994 * 109.47618 * 59.99613 * 4 2 1 33 33 H 1.09004 * 109.47157 * 179.97438 * 4 2 1 34 34 H 1.00895 * 110.99455 * 56.04989 * 5 4 2 35 35 H 1.00897 * 111.00177 * 180.02562 * 5 4 2 36 36 H 0.96995 * 120.00279 * 119.99539 * 6 2 1 37 37 H 1.07997 * 120.00094 * 6.62813 * 9 7 6 38 38 H 1.08002 * 119.99945 * 193.81386 * 10 9 7 39 39 H 1.08001 * 120.05452 * 359.97438 * 12 11 10 40 40 H 1.08003 * 119.94895 * 179.97438 * 13 12 11 41 41 H 0.97002 * 120.00134 * 179.97438 * 19 18 16 42 42 H 1.07998 * 119.94953 * 180.25861 * 24 14 13 43 43 H 1.08001 * 120.05145 * 179.76551 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5504 -2.1063 -1.2492 6 7 2.0184 -0.6906 1.1962 7 6 1.6928 -0.2302 2.4202 8 8 0.9933 0.7598 2.5319 9 6 2.1808 -0.9192 3.6144 10 6 1.7480 -0.5412 4.8362 11 6 0.5778 0.3390 4.9615 12 6 -0.5283 0.1603 4.1217 13 6 -1.6215 0.9871 4.2422 14 6 -1.6269 2.0031 5.1933 15 8 -2.7039 2.8189 5.3047 16 6 -3.6752 2.6797 4.3806 17 1 -3.6136 1.8891 3.6475 18 6 -4.7538 3.5518 4.3713 19 7 -4.8285 4.5148 5.2637 20 14 -6.0995 3.3593 3.0901 21 1 -5.7817 2.2082 2.2076 22 1 -7.3982 3.1184 3.7688 23 1 -6.1888 4.5980 2.2760 24 6 -0.5318 2.1811 6.0338 25 6 0.5658 1.3591 5.9205 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 0.5439 -2.1339 -1.1843 35 1 1.8742 -2.6043 -2.0648 36 1 2.5761 -1.4793 1.1072 37 1 2.8873 -1.7304 3.5189 38 1 2.2618 -0.8856 5.7216 39 1 -0.5231 -0.6248 3.3800 40 1 -2.4750 0.8503 3.5946 41 1 -5.5826 5.1249 5.2570 42 1 -0.5420 2.9682 6.7732 43 1 1.4166 1.5004 6.5706 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493760084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:07 Heat of formation + Delta-G solvation = -9.244687 kcal Electronic energy + Delta-G solvation = -25079.138847 eV Core-core repulsion = 21511.929955 eV Total energy + Delta-G solvation = -3567.208892 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.07685 -38.81782 -37.34610 -36.11473 -33.17651 -32.97428 -32.13131 -31.07659 -30.03317 -27.92513 -27.28412 -25.35976 -25.09810 -23.44746 -21.76838 -21.10750 -19.45657 -19.00271 -17.94311 -17.31279 -16.63463 -16.25341 -15.67417 -14.86200 -14.70070 -14.48802 -14.38458 -14.03616 -13.94950 -13.61286 -13.39684 -13.27254 -13.00517 -12.69239 -12.59397 -12.42342 -12.15772 -11.99287 -11.76111 -11.65565 -11.30901 -11.13001 -10.99522 -10.88713 -10.68923 -10.52477 -10.39616 -9.34760 -9.23967 -9.11637 -9.00713 -8.77250 -8.63299 -7.83706 -6.80900 -6.43658 -3.98715 1.31030 2.46842 2.78918 3.14718 3.16253 3.21107 3.45983 3.76616 3.99036 4.26681 4.62109 4.74885 4.87657 5.07987 5.13869 5.21719 5.28157 5.32868 5.37689 5.48356 5.67334 5.71621 5.80582 5.81170 5.87683 5.91215 5.97573 6.29245 6.35571 6.40426 6.47455 6.53236 6.69527 6.75252 6.82044 6.87292 7.07992 7.08547 7.17190 7.38198 7.53801 7.55185 7.92691 7.96791 8.03837 8.73264 9.02506 9.74613 10.74409 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.004298 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.534271 B = 6513.685995 C = 8055.057889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 C -0.165 4.165 4 C 0.058 3.942 5 N -0.850 5.850 6 N -0.717 5.717 7 C 0.540 3.460 8 O -0.514 6.514 9 C -0.268 4.268 10 C 0.024 3.976 11 C -0.189 4.189 12 C 0.022 3.978 13 C -0.246 4.246 14 C 0.172 3.828 15 O -0.174 6.174 16 C -0.387 4.387 17 H 0.094 0.906 18 C 0.039 3.961 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.211 4.211 25 C -0.044 4.044 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.345 0.655 35 H 0.340 0.660 36 H 0.399 0.601 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.123 0.877 41 H 0.270 0.730 42 H 0.115 0.885 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.868 -12.363 -10.788 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.093 3.907 3 C -0.224 4.224 4 C -0.073 4.073 5 N -0.381 5.381 6 N -0.370 5.370 7 C 0.330 3.670 8 O -0.391 6.391 9 C -0.290 4.290 10 C 0.004 3.996 11 C -0.190 4.190 12 C 0.003 3.997 13 C -0.265 4.265 14 C 0.118 3.882 15 O -0.076 6.076 16 C -0.463 4.463 17 H 0.111 0.889 18 C -0.166 4.166 19 N -0.495 5.495 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.231 4.231 25 C -0.063 4.063 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.234 0.766 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.116 0.884 40 H 0.140 0.860 41 H 0.079 0.921 42 H 0.133 0.867 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.534 -11.336 -9.841 20.212 hybrid contribution -0.742 -0.287 -1.800 1.968 sum 12.791 -11.623 -11.641 20.838 Atomic orbital electron populations 1.22272 0.94467 1.01971 1.04042 1.20189 0.94319 0.91925 0.84220 1.22224 1.00571 0.95603 1.03955 1.22075 1.00283 0.88831 0.96111 1.58713 1.17192 1.14355 1.47880 1.45948 1.54555 1.31754 1.04730 1.18432 0.80137 0.84978 0.83415 1.90916 1.36274 1.25961 1.85947 1.22614 1.08178 1.05202 0.92967 1.22293 0.91021 0.90324 0.95943 1.18297 0.95401 1.02325 1.02960 1.20580 0.91184 0.95730 0.92187 1.20944 1.00865 1.00221 1.04479 1.19533 0.87247 0.89108 0.92357 1.83897 1.24372 1.51454 1.47920 1.21433 0.99132 1.15780 1.09992 0.88900 1.25305 0.98213 0.94938 0.98099 1.70029 1.30490 1.15678 1.33341 0.85650 0.79709 0.78646 0.79467 1.19073 1.20126 1.20117 1.19992 0.93665 1.04691 1.04720 1.20649 0.96115 0.93828 0.95698 0.89260 0.92598 0.92666 0.93001 0.92377 0.89412 0.94202 0.90613 0.84111 0.84735 0.76619 0.86370 0.86306 0.88420 0.85955 0.92052 0.86739 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 8.07 37.16 0.30 -1.85 16 2 C 0.18 2.01 0.83 -131.81 -0.11 1.90 16 3 C -0.17 -2.02 8.40 37.16 0.31 -1.71 16 4 C 0.06 0.48 5.78 -3.82 -0.02 0.46 16 5 N -0.85 -6.22 9.28 -10.37 -0.10 -6.31 16 6 N -0.72 -8.38 4.97 -49.03 -0.24 -8.62 16 7 C 0.54 8.05 6.06 -13.04 -0.08 7.97 16 8 O -0.51 -9.64 8.40 5.16 0.04 -9.60 16 9 C -0.27 -3.54 9.86 -37.51 -0.37 -3.91 16 10 C 0.02 0.34 9.81 -37.19 -0.37 -0.02 16 11 C -0.19 -3.51 4.63 -105.03 -0.49 -4.00 16 12 C 0.02 0.44 6.60 -39.15 -0.26 0.18 16 13 C -0.25 -5.75 9.14 -39.47 -0.36 -6.11 16 14 C 0.17 4.39 6.66 -38.88 -0.26 4.14 16 15 O -0.17 -5.14 9.74 0.76 0.01 -5.13 16 16 C -0.39 -11.14 9.48 30.91 0.29 -10.85 16 17 H 0.09 2.51 5.19 -52.49 -0.27 2.24 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.64 13.67 55.48 0.76 -24.88 16 20 Si 0.94 20.96 29.55 -169.99 -5.02 15.94 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 C -0.21 -4.75 9.97 -39.46 -0.39 -5.14 16 25 C -0.04 -0.85 9.78 -39.15 -0.38 -1.23 16 26 H 0.09 1.49 6.16 -51.93 -0.32 1.17 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.65 6.57 -51.93 -0.34 0.30 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.40 6.16 -51.93 -0.32 1.08 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.34 2.63 7.03 -39.29 -0.28 2.35 16 35 H 0.34 1.84 9.08 -39.29 -0.36 1.48 16 36 H 0.40 3.93 8.29 -40.82 -0.34 3.59 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.10 1.86 6.78 -52.49 -0.36 1.50 16 40 H 0.12 2.89 5.63 -52.48 -0.30 2.60 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 43 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 349.66 15.07 5.27 5.27 Total: -1.00 -32.69 349.66 -7.38 -40.07 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -5.82 Total: 12.46 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -2.28 Total: -19.20 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.42 Total: -39.82 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.05 Total: -14.72 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.69 -7.38 -40.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493760084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.827 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds