Wall clock time and date at job start Tue Mar 31 2020 09:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47032 * 2 1 4 4 C 1.52998 * 109.47116 * 240.00161 * 2 1 3 5 5 N 1.46906 * 109.47031 * 299.99596 * 4 2 1 6 6 N 1.46503 * 109.47519 * 120.00041 * 2 1 3 7 7 C 1.34774 * 119.99682 * 300.00282 * 6 2 1 8 8 O 1.21727 * 120.00011 * 359.97438 * 7 6 2 9 9 C 1.46252 * 120.00082 * 180.02562 * 7 6 2 10 10 C 1.35023 * 120.00058 * 186.63870 * 9 7 6 11 11 C 1.46963 * 120.00405 * 13.80289 * 10 9 7 12 12 C 1.40022 * 120.09443 * 39.76301 * 11 10 9 13 13 C 1.37598 * 119.89450 * 180.02562 * 12 11 10 14 14 C 1.39170 * 120.10514 * 0.25281 * 13 12 11 15 15 O 1.35569 * 119.90184 * 179.72182 * 14 13 12 16 16 C 1.34777 * 117.00196 * 353.54601 * 15 14 13 17 17 H 1.07999 * 119.99722 * 5.12258 * 16 15 14 18 18 C 1.38716 * 120.00268 * 185.12354 * 16 15 14 19 19 N 1.31503 * 119.99888 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99962 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47200 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46945 * 120.00532 * 20 18 16 23 23 H 1.48505 * 109.47047 * 240.00292 * 20 18 16 24 24 C 1.39186 * 120.19957 * 359.49189 * 14 13 12 25 25 C 1.37597 * 120.09940 * 0.50767 * 24 14 13 26 26 H 1.08996 * 109.47109 * 299.99915 * 1 2 3 27 27 H 1.08994 * 109.46801 * 60.00115 * 1 2 3 28 28 H 1.09002 * 109.46590 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46805 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46814 * 300.00022 * 3 2 1 31 31 H 1.08996 * 109.47104 * 60.00082 * 3 2 1 32 32 H 1.08994 * 109.47618 * 59.99613 * 4 2 1 33 33 H 1.09004 * 109.47157 * 179.97438 * 4 2 1 34 34 H 1.00895 * 110.99455 * 56.04989 * 5 4 2 35 35 H 1.00897 * 111.00177 * 180.02562 * 5 4 2 36 36 H 0.96995 * 120.00279 * 119.99539 * 6 2 1 37 37 H 1.07997 * 120.00094 * 6.62813 * 9 7 6 38 38 H 1.08002 * 119.99945 * 193.81386 * 10 9 7 39 39 H 1.08001 * 120.05452 * 359.97438 * 12 11 10 40 40 H 1.08003 * 119.94895 * 179.97438 * 13 12 11 41 41 H 0.97002 * 120.00134 * 179.97438 * 19 18 16 42 42 H 1.07998 * 119.94953 * 180.25861 * 24 14 13 43 43 H 1.08001 * 120.05145 * 179.76551 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5504 -2.1063 -1.2492 6 7 2.0184 -0.6906 1.1962 7 6 1.6928 -0.2302 2.4202 8 8 0.9933 0.7598 2.5319 9 6 2.1808 -0.9192 3.6144 10 6 1.7480 -0.5412 4.8362 11 6 0.5778 0.3390 4.9615 12 6 -0.5283 0.1603 4.1217 13 6 -1.6215 0.9871 4.2422 14 6 -1.6269 2.0031 5.1933 15 8 -2.7039 2.8189 5.3047 16 6 -3.6752 2.6797 4.3806 17 1 -3.6136 1.8891 3.6475 18 6 -4.7538 3.5518 4.3713 19 7 -4.8285 4.5148 5.2637 20 14 -6.0995 3.3593 3.0901 21 1 -5.7817 2.2082 2.2076 22 1 -7.3982 3.1184 3.7688 23 1 -6.1888 4.5980 2.2760 24 6 -0.5318 2.1811 6.0338 25 6 0.5658 1.3591 5.9205 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 0.5439 -2.1339 -1.1843 35 1 1.8742 -2.6043 -2.0648 36 1 2.5761 -1.4793 1.1072 37 1 2.8873 -1.7304 3.5189 38 1 2.2618 -0.8856 5.7216 39 1 -0.5231 -0.6248 3.3800 40 1 -2.4750 0.8503 3.5946 41 1 -5.5826 5.1249 5.2570 42 1 -0.5420 2.9682 6.7732 43 1 1.4166 1.5004 6.5706 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493760084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:06 Heat of formation + Delta-G solvation = -33.900220 kcal Electronic energy + Delta-G solvation = -25080.207991 eV Core-core repulsion = 21511.929955 eV Total energy + Delta-G solvation = -3568.278036 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29278 -40.53430 -38.67323 -37.57195 -34.58154 -34.04663 -33.88067 -32.12927 -31.74725 -29.50499 -28.30061 -27.34256 -25.93705 -24.73733 -23.48290 -22.61124 -20.47897 -20.20812 -19.85872 -19.01524 -17.97133 -17.18975 -16.55183 -16.48578 -16.23293 -15.90210 -15.72306 -15.51321 -15.16457 -15.11685 -14.88559 -14.49152 -14.29872 -14.03321 -13.92110 -13.75382 -13.54538 -13.36438 -13.03437 -12.94198 -12.82334 -12.59517 -12.37995 -12.22101 -12.12919 -12.09676 -11.83673 -11.20735 -10.92184 -10.40943 -10.32803 -9.91371 -9.61422 -9.47076 -8.52040 -8.48084 -6.15938 0.01498 0.74731 1.18849 1.30685 1.42924 1.49686 2.15442 2.47098 2.59169 2.87340 3.23740 3.54460 3.58825 3.82530 4.01403 4.06865 4.09897 4.15786 4.17446 4.26712 4.57978 4.58145 4.65720 4.67481 4.75675 4.77230 4.82562 4.91172 4.97941 5.07507 5.11894 5.24317 5.32673 5.38512 5.40819 5.47351 5.70115 5.75112 5.80237 5.91610 6.02698 6.19064 6.27699 6.58414 6.91980 6.94811 7.62318 7.76755 8.73684 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.004298 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.534271 B = 6513.685995 C = 8055.057889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.179 3.821 3 C -0.161 4.161 4 C 0.068 3.932 5 N -0.852 5.852 6 N -0.698 5.698 7 C 0.525 3.475 8 O -0.558 6.558 9 C -0.235 4.235 10 C 0.002 3.998 11 C -0.161 4.161 12 C 0.021 3.979 13 C -0.257 4.257 14 C 0.128 3.872 15 O -0.230 6.230 16 C -0.413 4.413 17 H 0.095 0.905 18 C -0.021 4.021 19 N -0.918 5.918 20 Si 1.018 2.982 21 H -0.256 1.256 22 H -0.263 1.263 23 H -0.266 1.266 24 C -0.224 4.224 25 C -0.045 4.045 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.343 0.657 35 H 0.354 0.646 36 H 0.413 0.587 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.274 0.726 42 H 0.112 0.888 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.205 -15.761 -12.700 26.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.092 3.908 3 C -0.220 4.220 4 C -0.063 4.063 5 N -0.384 5.384 6 N -0.351 5.351 7 C 0.315 3.685 8 O -0.439 6.439 9 C -0.256 4.256 10 C -0.018 4.018 11 C -0.161 4.161 12 C 0.002 3.998 13 C -0.276 4.276 14 C 0.077 3.923 15 O -0.136 6.136 16 C -0.489 4.489 17 H 0.112 0.888 18 C -0.219 4.219 19 N -0.557 5.557 20 Si 0.837 3.163 21 H -0.179 1.179 22 H -0.187 1.187 23 H -0.191 1.191 24 C -0.243 4.243 25 C -0.063 4.063 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.250 0.750 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.083 0.917 42 H 0.130 0.870 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 16.954 -14.814 -11.782 25.411 hybrid contribution -1.314 0.507 -1.314 1.927 sum 15.639 -14.306 -13.096 24.915 Atomic orbital electron populations 1.22201 0.95888 1.01999 1.02295 1.20248 0.93194 0.91847 0.85486 1.22152 1.01290 0.96120 1.02442 1.21946 1.00905 0.89078 0.94380 1.58691 1.17113 1.13772 1.48854 1.45839 1.53526 1.31637 1.04090 1.18998 0.79828 0.84714 0.84968 1.90946 1.38235 1.28017 1.86692 1.23090 1.06947 1.04145 0.91388 1.22533 0.90385 0.90435 0.98419 1.18861 0.96040 1.01163 1.00066 1.20728 0.90817 0.95445 0.92767 1.20957 1.01646 1.00877 1.04155 1.20048 0.87786 0.89988 0.94446 1.83861 1.26090 1.54049 1.49582 1.21825 0.99946 1.16562 1.10607 0.88755 1.26589 1.00587 0.94223 1.00478 1.70164 1.32018 1.17407 1.36071 0.84550 0.76158 0.79115 0.76473 1.17941 1.18739 1.19106 1.20288 0.94094 1.05565 1.04358 1.21126 0.96067 0.92707 0.96359 0.93690 0.91688 0.91696 0.91663 0.91295 0.93569 0.93242 0.89284 0.84317 0.83175 0.74953 0.81570 0.81652 0.87146 0.87622 0.91717 0.86950 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.07 71.98 0.58 -3.51 16 2 C 0.18 3.60 0.83 3.61 0.00 3.60 16 3 C -0.16 -3.77 8.40 71.98 0.60 -3.16 16 4 C 0.07 0.87 5.78 86.30 0.50 1.37 16 5 N -0.85 -9.29 9.28 -186.71 -1.73 -11.03 16 6 N -0.70 -14.00 4.97 -427.23 -2.12 -16.12 16 7 C 0.52 14.14 6.06 86.33 0.52 14.67 16 8 O -0.56 -20.71 8.40 -4.43 -0.04 -20.75 16 9 C -0.24 -4.94 9.86 23.61 0.23 -4.71 16 10 C 0.00 0.04 9.81 23.82 0.23 0.27 16 11 C -0.16 -5.64 4.63 -20.13 -0.09 -5.73 16 12 C 0.02 0.85 6.60 22.55 0.15 1.00 16 13 C -0.26 -12.81 9.14 22.34 0.20 -12.60 16 14 C 0.13 7.03 6.66 22.72 0.15 7.18 16 15 O -0.23 -14.81 9.74 -20.21 -0.20 -15.01 16 16 C -0.41 -25.76 9.48 67.93 0.64 -25.12 16 17 H 0.10 5.56 5.19 -2.91 -0.02 5.55 16 18 C -0.02 -1.27 5.49 84.86 0.47 -0.80 16 19 N -0.92 -58.48 13.67 21.62 0.30 -58.19 16 20 Si 1.02 45.12 29.55 68.60 2.03 47.15 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 24 C -0.22 -10.48 9.97 22.35 0.22 -10.25 16 25 C -0.04 -1.65 9.78 22.55 0.22 -1.43 16 26 H 0.04 1.54 6.16 -2.39 -0.01 1.53 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.43 6.57 -2.39 -0.02 1.42 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.49 6.16 -2.39 -0.01 1.48 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.34 4.15 7.03 -89.70 -0.63 3.52 16 35 H 0.35 2.46 9.08 -89.70 -0.81 1.64 16 36 H 0.41 6.13 8.29 -92.71 -0.77 5.36 16 37 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 38 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 39 H 0.11 4.16 6.78 -2.91 -0.02 4.14 16 40 H 0.11 5.46 5.63 -2.91 -0.02 5.45 16 41 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 42 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 43 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -81.01 349.66 1.72 -79.28 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -1.15 Total: 33.90 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 4.64 Total: -39.24 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -3.56 Total: -85.33 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.23 Total: -35.76 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -81.01 1.72 -79.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493760084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.383 kcal (2) G-P(sol) polarization free energy of solvation -81.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds