Wall clock time and date at job start Tue Mar 31 2020 09:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46505 * 119.99422 * 2 1 4 4 C 1.34773 * 120.00584 * 180.02562 * 2 1 3 5 5 O 1.21286 * 119.99562 * 6.38883 * 4 2 1 6 6 C 1.50697 * 120.00148 * 186.40073 * 4 2 1 7 7 C 1.53010 * 109.46897 * 288.40703 * 6 4 2 8 8 C 1.53000 * 109.47203 * 168.41061 * 6 4 2 9 9 N 1.46500 * 109.47415 * 48.40696 * 6 4 2 10 10 C 1.34777 * 120.00009 * 183.07239 * 9 6 4 11 11 O 1.21547 * 120.00046 * 0.02562 * 10 9 6 12 12 C 1.47887 * 120.00090 * 180.02562 * 10 9 6 13 13 C 1.39918 * 120.02259 * 359.97144 * 12 10 9 14 14 C 1.38327 * 120.35450 * 180.02562 * 13 12 10 15 15 C 1.37753 * 120.41840 * 359.95909 * 14 13 12 16 16 C 1.40750 * 120.03490 * 0.04086 * 15 14 13 17 17 C 1.41432 * 120.17626 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00370 * 27.75722 * 17 16 15 19 19 C 1.39945 * 119.99958 * 207.76151 * 17 16 15 20 20 N 1.30825 * 119.99504 * 8.20988 * 19 17 16 21 21 Si 1.86799 * 119.99946 * 188.21349 * 19 17 16 22 22 H 1.48504 * 109.47139 * 90.00010 * 21 19 17 23 23 H 1.48497 * 109.47053 * 209.99442 * 21 19 17 24 24 H 1.48498 * 109.47181 * 330.00155 * 21 19 17 25 25 C 1.38991 * 120.02311 * 180.02562 * 12 10 9 26 26 H 1.09002 * 109.46974 * 239.99516 * 1 2 3 27 27 H 1.08999 * 109.47712 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46576 * 119.99713 * 1 2 3 29 29 H 1.08992 * 109.47627 * 275.03999 * 3 2 1 30 30 H 1.09006 * 109.47076 * 35.04625 * 3 2 1 31 31 H 1.09004 * 109.46601 * 155.03507 * 3 2 1 32 32 H 1.09000 * 109.46801 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.46958 * 300.00208 * 7 6 4 34 34 H 1.08999 * 109.46531 * 59.99805 * 7 6 4 35 35 H 1.09003 * 109.47131 * 299.99807 * 8 6 4 36 36 H 1.09005 * 109.47340 * 59.99579 * 8 6 4 37 37 H 1.09001 * 109.47098 * 179.97438 * 8 6 4 38 38 H 0.96997 * 119.99747 * 3.07063 * 9 6 4 39 39 H 1.08002 * 119.82193 * 0.02696 * 13 12 10 40 40 H 1.08004 * 119.79356 * 179.97438 * 14 13 12 41 41 H 1.07990 * 119.98334 * 180.02562 * 15 14 13 42 42 H 0.97008 * 119.99842 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.20619 * 359.69225 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1390 -1.1671 -0.0005 5 8 1.5382 -2.2142 -0.1179 6 6 3.6389 -1.1711 0.1450 7 6 4.2774 -0.6408 -1.1404 8 6 4.1225 -2.5996 0.4028 9 7 4.0228 -0.3150 1.2701 10 6 5.3257 -0.1163 1.5519 11 8 6.1823 -0.6470 0.8722 12 6 5.7132 0.7474 2.6880 13 6 4.7276 1.3590 3.4705 14 6 5.0823 2.1687 4.5344 15 6 6.4093 2.3816 4.8367 16 6 7.4147 1.7748 4.0609 17 6 8.7781 1.9918 4.3683 18 1 9.0740 2.2154 5.3826 19 6 9.7436 1.9170 3.3581 20 7 9.3748 1.8067 2.1078 21 14 11.5589 1.9745 3.7950 22 1 12.0556 0.5947 4.0291 23 1 12.3178 2.5907 2.6771 24 1 11.7464 2.7836 5.0260 25 6 7.0567 0.9530 2.9787 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5138 -0.8901 29 1 2.3009 1.6287 -1.0236 30 1 1.6503 2.0041 0.5902 31 1 3.1859 1.1177 0.4338 32 1 5.3623 -0.6441 -1.0354 33 1 3.9918 -1.2777 -1.9776 34 1 3.9328 0.3769 -1.3241 35 1 3.6676 -2.9775 1.3185 36 1 3.8369 -3.2366 -0.4344 37 1 5.2074 -2.6026 0.5076 38 1 3.3392 0.1088 1.8123 39 1 3.6842 1.1981 3.2424 40 1 4.3140 2.6366 5.1322 41 1 6.6782 3.0147 5.6692 42 1 10.0441 1.7552 1.4074 43 1 7.8208 0.4797 2.3799 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518137559.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:36 Heat of formation + Delta-G solvation = -34.527892 kcal Electronic energy + Delta-G solvation = -25505.455884 eV Core-core repulsion = 21937.150630 eV Total energy + Delta-G solvation = -3568.305254 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.90613 -39.01920 -37.20921 -35.84457 -35.13725 -33.79690 -31.73948 -29.68786 -29.40870 -28.49378 -26.95291 -26.58957 -25.37695 -23.53218 -21.92318 -21.02154 -19.43279 -19.30313 -17.92882 -17.26756 -16.43772 -15.96000 -15.57819 -15.25451 -14.92845 -14.69384 -14.52132 -14.01059 -13.88993 -13.30676 -13.22872 -12.94369 -12.80208 -12.73004 -12.61843 -12.55988 -12.16395 -12.05872 -11.83202 -11.66317 -11.62577 -11.22827 -11.16696 -11.06848 -10.76598 -10.52261 -10.10195 -9.89570 -9.77708 -9.32683 -8.93525 -8.93057 -8.72912 -7.70809 -7.53820 -6.76869 -4.49185 2.09957 2.32355 2.77037 2.80802 3.05863 3.08311 3.10828 3.53214 3.74850 3.89674 4.27143 4.60864 4.90623 5.02224 5.04000 5.13730 5.17915 5.42151 5.49850 5.53410 5.56772 5.68713 5.74407 5.84830 5.91089 5.98472 6.04895 6.18321 6.23132 6.36592 6.45090 6.63872 6.68018 6.91968 6.94694 7.10472 7.18235 7.32127 7.61512 7.66327 7.84594 7.94884 7.98347 8.13181 8.45990 8.75620 8.77736 8.82155 10.14677 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022429 B = 0.003848 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.083364 B = 7274.866789 C = 7975.055002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.618 5.618 3 C 0.043 3.957 4 C 0.518 3.482 5 O -0.529 6.529 6 C 0.164 3.836 7 C -0.169 4.169 8 C -0.146 4.146 9 N -0.730 5.730 10 C 0.569 3.431 11 O -0.531 6.531 12 C -0.133 4.133 13 C -0.215 4.215 14 C -0.100 4.100 15 C -0.206 4.206 16 C 0.096 3.904 17 C -0.458 4.458 18 H 0.080 0.920 19 C 0.070 3.930 20 N -0.792 5.792 21 Si 0.915 3.085 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.263 1.263 25 C -0.084 4.084 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.401 0.599 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.283 0.717 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.534 -0.198 -4.332 12.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.352 5.352 3 C -0.100 4.100 4 C 0.304 3.696 5 O -0.404 6.404 6 C 0.075 3.925 7 C -0.227 4.227 8 C -0.204 4.204 9 N -0.388 5.388 10 C 0.361 3.639 11 O -0.408 6.408 12 C -0.136 4.136 13 C -0.235 4.235 14 C -0.118 4.118 15 C -0.226 4.226 16 C 0.093 3.907 17 C -0.487 4.487 18 H 0.098 0.902 19 C -0.148 4.148 20 N -0.418 5.418 21 Si 0.739 3.261 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.187 1.187 25 C -0.104 4.104 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.239 0.761 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.148 -1.157 -5.143 12.331 hybrid contribution 0.204 0.524 0.358 0.666 sum -10.944 -0.633 -4.784 11.961 Atomic orbital electron populations 1.21641 0.79131 1.02349 1.02310 1.47800 1.07086 1.06654 1.73700 1.22644 0.99970 0.84706 1.02700 1.20740 0.89474 0.83224 0.76127 1.90689 1.69697 1.31334 1.48687 1.20423 0.89525 0.93515 0.89070 1.22375 1.04956 1.00946 0.94422 1.22006 1.03391 0.92645 1.02390 1.46401 1.08685 1.51269 1.32477 1.18839 0.80878 0.80082 0.84131 1.90647 1.49740 1.49668 1.50719 1.19469 0.95436 1.01889 0.96831 1.20343 0.95685 1.06740 1.00698 1.20430 0.95620 0.98774 0.97002 1.21167 0.92488 1.04860 1.04104 1.17638 0.93191 0.88979 0.90860 1.19610 0.90979 1.42213 0.95938 0.90197 1.25951 1.01883 0.92470 0.94481 1.69734 1.36545 1.35090 1.00389 0.86195 0.81236 0.79438 0.79187 1.19241 1.20186 1.18659 1.21830 0.93147 0.96848 0.98547 0.92094 0.90556 0.92113 0.92290 0.90896 0.87582 0.88079 0.91756 0.91892 0.92278 0.91314 0.89588 0.76057 0.89485 0.88877 0.88561 0.90529 0.83991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 10.18 59.85 0.61 1.42 16 2 N -0.62 -7.14 3.22 -189.51 -0.61 -7.75 16 3 C 0.04 0.43 8.40 59.85 0.50 0.93 16 4 C 0.52 7.48 6.50 -10.99 -0.07 7.40 16 5 O -0.53 -9.01 16.00 5.55 0.09 -8.92 16 6 C 0.16 2.44 0.63 -132.97 -0.08 2.35 16 7 C -0.17 -2.39 8.09 37.16 0.30 -2.09 16 8 C -0.15 -2.28 7.81 37.16 0.29 -1.99 16 9 N -0.73 -11.46 3.02 -49.60 -0.15 -11.61 16 10 C 0.57 11.33 7.19 -12.31 -0.09 11.25 16 11 O -0.53 -11.84 12.55 5.32 0.07 -11.77 16 12 C -0.13 -2.92 5.87 -105.04 -0.62 -3.54 16 13 C -0.21 -4.20 9.55 -38.92 -0.37 -4.58 16 14 C -0.10 -2.01 10.01 -39.73 -0.40 -2.41 16 15 C -0.21 -4.67 9.78 -38.81 -0.38 -5.05 16 16 C 0.10 2.43 5.57 -106.87 -0.60 1.83 16 17 C -0.46 -11.64 9.07 -37.73 -0.34 -11.98 16 18 H 0.08 1.94 7.86 -52.49 -0.41 1.52 16 19 C 0.07 1.71 5.31 -17.34 -0.09 1.62 16 20 N -0.79 -20.20 10.64 55.55 0.59 -19.61 16 21 Si 0.91 18.34 29.57 -169.99 -5.03 13.32 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 C -0.08 -2.11 8.21 -38.44 -0.32 -2.43 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.49 7.86 -51.93 -0.41 0.09 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.53 7.67 -51.93 -0.40 0.14 16 30 H 0.07 0.58 8.03 -51.93 -0.42 0.16 16 31 H 0.11 1.28 3.73 -51.93 -0.19 1.08 16 32 H 0.10 1.68 5.94 -51.93 -0.31 1.37 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.80 5.68 -51.93 -0.30 0.51 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.00 7.97 -51.93 -0.41 0.58 16 37 H 0.09 1.48 6.39 -51.93 -0.33 1.14 16 38 H 0.40 5.66 5.05 -40.82 -0.21 5.46 16 39 H 0.09 1.40 6.38 -52.49 -0.33 1.07 16 40 H 0.09 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 42 H 0.28 6.67 8.30 -40.82 -0.34 6.34 16 43 H 0.14 3.90 5.63 -52.49 -0.30 3.60 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -28.94 343.66 -7.20 -36.14 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -5.69 Total: 12.29 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -1.65 Total: -7.26 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: -0.17 Total: -38.97 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: 0.16 Total: -20.70 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.94 -7.20 -36.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518137559.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.614 kcal (2) G-P(sol) polarization free energy of solvation -28.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds