Wall clock time and date at job start Tue Mar 31 2020 09:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46501 * 119.99843 * 2 1 4 4 C 1.34780 * 119.99906 * 179.97438 * 2 1 3 5 5 O 1.21276 * 119.99923 * 6.22549 * 4 2 1 6 6 C 1.50699 * 119.99799 * 186.22297 * 4 2 1 7 7 C 1.53006 * 109.46924 * 290.07980 * 6 4 2 8 8 C 1.53001 * 109.47130 * 170.08538 * 6 4 2 9 9 N 1.46498 * 109.47262 * 50.08291 * 6 4 2 10 10 C 1.34774 * 119.99809 * 182.63479 * 9 6 4 11 11 O 1.21590 * 120.00178 * 359.97438 * 10 9 6 12 12 C 1.47643 * 119.99875 * 180.02562 * 10 9 6 13 13 C 1.40014 * 119.89589 * 179.97438 * 12 10 9 14 14 C 1.36316 * 120.10893 * 180.25720 * 13 12 10 15 15 C 1.40890 * 119.88976 * 359.51896 * 14 13 12 16 16 C 1.41109 * 120.10387 * 180.23729 * 15 14 13 17 17 H 1.07999 * 119.99331 * 205.30565 * 16 15 14 18 18 C 1.40221 * 120.00229 * 25.30080 * 16 15 14 19 19 N 1.30646 * 120.00007 * 14.81523 * 18 16 15 20 20 Si 1.86801 * 120.00153 * 194.82615 * 18 16 15 21 21 H 1.48497 * 109.47325 * 89.99184 * 20 18 16 22 22 H 1.48503 * 109.47239 * 209.99828 * 20 18 16 23 23 H 1.48503 * 109.46882 * 329.99846 * 20 18 16 24 24 C 1.40895 * 119.79237 * 0.50138 * 15 14 13 25 25 C 1.36317 * 119.89116 * 359.73226 * 24 15 14 26 26 H 1.08997 * 109.47071 * 270.00396 * 1 2 3 27 27 H 1.09002 * 109.46806 * 30.00213 * 1 2 3 28 28 H 1.08995 * 109.46948 * 149.99788 * 1 2 3 29 29 H 1.08997 * 109.46986 * 265.18625 * 3 2 1 30 30 H 1.08998 * 109.46999 * 25.18800 * 3 2 1 31 31 H 1.09004 * 109.47117 * 145.19105 * 3 2 1 32 32 H 1.08997 * 109.47070 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47228 * 300.00674 * 7 6 4 34 34 H 1.09005 * 109.46651 * 60.00299 * 7 6 4 35 35 H 1.09002 * 109.46878 * 300.00090 * 8 6 4 36 36 H 1.09000 * 109.47135 * 59.99785 * 8 6 4 37 37 H 1.08997 * 109.47229 * 179.97438 * 8 6 4 38 38 H 0.96999 * 119.99922 * 2.63090 * 9 6 4 39 39 H 1.07999 * 119.95022 * 359.97438 * 13 12 10 40 40 H 1.08001 * 120.05499 * 179.72345 * 14 13 12 41 41 H 0.96999 * 120.00076 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.05458 * 179.71268 * 24 15 14 43 43 H 1.07997 * 119.94472 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5379 -2.2145 -0.1129 6 6 3.6393 -1.1710 0.1420 7 6 4.2729 -0.6049 -1.1304 8 6 4.1274 -2.6045 0.3604 9 7 4.0238 -0.3442 1.2886 10 6 5.3268 -0.1567 1.5774 11 8 6.1832 -0.6741 0.8866 12 6 5.7143 0.6762 2.7333 13 6 7.0686 0.8691 3.0317 14 6 7.4311 1.6329 4.1010 15 6 6.4407 2.2369 4.9004 16 6 6.8110 3.0326 6.0054 17 1 6.1296 3.1564 6.8340 18 6 8.0637 3.6623 6.0275 19 7 8.7654 3.7594 4.9298 20 14 8.7292 4.3621 7.6265 21 1 9.5174 3.3203 8.3327 22 1 9.6010 5.5276 7.3318 23 1 7.5982 4.7946 8.4861 24 6 5.0791 2.0395 4.5964 25 6 4.7263 1.2701 3.5279 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5138 29 1 2.4539 1.5403 -1.0240 30 1 1.5738 2.0483 0.4374 31 1 3.1100 1.1615 0.5867 32 1 5.3581 -0.6080 -1.0283 33 1 3.9868 -1.2200 -1.9835 34 1 3.9252 0.4164 -1.2860 35 1 3.6759 -3.0079 1.2668 36 1 3.8413 -3.2197 -0.4927 37 1 5.2126 -2.6073 0.4623 38 1 3.3405 0.0684 1.8399 39 1 7.8272 0.4083 2.4164 40 1 8.4760 1.7774 4.3330 41 1 9.6318 4.1954 4.9450 42 1 4.3163 2.4968 5.2092 43 1 3.6829 1.1186 3.2939 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536190403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:39 Heat of formation + Delta-G solvation = -54.951608 kcal Electronic energy + Delta-G solvation = -25198.549416 eV Core-core repulsion = 21629.358523 eV Total energy + Delta-G solvation = -3569.190893 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.06499 -40.39134 -38.95389 -36.92023 -36.35522 -35.67419 -33.09053 -31.71717 -30.99221 -29.35250 -28.05238 -27.69272 -27.48312 -24.45968 -23.30657 -22.63742 -21.01696 -20.49471 -19.32441 -18.86561 -18.04059 -17.28146 -17.01197 -16.57728 -16.27616 -15.91475 -15.71929 -15.59717 -15.10251 -14.82849 -14.52863 -14.41185 -14.00779 -13.84078 -13.68153 -13.58166 -13.49380 -13.30469 -13.22507 -13.07652 -12.88465 -12.81889 -12.69828 -12.58001 -12.34559 -12.23048 -11.73159 -11.34536 -11.17689 -11.12992 -10.40172 -10.13440 -9.74654 -9.53716 -9.38457 -8.74666 -6.47145 0.45481 1.18283 1.18516 1.39675 1.44375 1.54082 1.87733 2.12831 2.18555 2.30653 2.81266 3.21973 3.71617 3.83614 3.90212 4.20684 4.23894 4.32957 4.41988 4.44610 4.44766 4.62364 4.64126 4.69310 4.75322 4.79099 4.91378 4.94812 5.00642 5.03818 5.13936 5.22616 5.25726 5.29127 5.37847 5.46145 5.61579 5.80457 5.97621 6.04059 6.12786 6.23261 6.58906 6.61923 6.79742 6.90351 6.91833 7.41204 8.18876 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.026105 B = 0.003291 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.340342 B = 8506.957669 C = 9076.950973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.045 3.955 4 C 0.518 3.482 5 O -0.562 6.562 6 C 0.164 3.836 7 C -0.164 4.164 8 C -0.142 4.142 9 N -0.715 5.715 10 C 0.581 3.419 11 O -0.581 6.581 12 C -0.288 4.288 13 C -0.047 4.047 14 C -0.201 4.201 15 C 0.101 3.899 16 C -0.472 4.472 17 H 0.090 0.910 18 C 0.034 3.966 19 N -0.804 5.804 20 Si 0.987 3.013 21 H -0.263 1.263 22 H -0.268 1.268 23 H -0.252 1.252 24 C -0.243 4.243 25 C -0.038 4.038 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.408 0.592 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.294 0.706 42 H 0.115 0.885 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.723 -0.314 -6.283 13.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C -0.097 4.097 4 C 0.305 3.695 5 O -0.440 6.440 6 C 0.075 3.925 7 C -0.222 4.222 8 C -0.200 4.200 9 N -0.372 5.372 10 C 0.376 3.624 11 O -0.464 6.464 12 C -0.293 4.293 13 C -0.066 4.066 14 C -0.221 4.221 15 C 0.097 3.903 16 C -0.499 4.499 17 H 0.108 0.892 18 C -0.184 4.184 19 N -0.428 5.428 20 Si 0.807 3.193 21 H -0.188 1.188 22 H -0.192 1.192 23 H -0.176 1.176 24 C -0.262 4.262 25 C -0.057 4.057 26 H 0.084 0.916 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.247 0.753 39 H 0.113 0.887 40 H 0.123 0.877 41 H 0.105 0.895 42 H 0.133 0.867 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.289 -1.107 -6.953 13.304 hybrid contribution 0.389 0.450 0.775 0.976 sum -10.900 -0.657 -6.178 12.547 Atomic orbital electron populations 1.21884 0.77512 1.04086 1.02895 1.47863 1.08208 1.06243 1.71990 1.22631 0.98782 0.84482 1.03809 1.20559 0.89050 0.83763 0.76156 1.90673 1.70011 1.32552 1.50744 1.20426 0.90285 0.93115 0.88686 1.22315 1.03182 1.02088 0.94576 1.21933 1.02041 0.93584 1.02485 1.46066 1.07494 1.52681 1.30977 1.18280 0.81603 0.79110 0.83446 1.90594 1.50934 1.52176 1.52664 1.19125 0.94082 1.13250 1.02794 1.20550 0.94869 0.95630 0.95569 1.21004 0.99592 1.02242 0.99247 1.18155 0.92139 0.88536 0.91428 1.20159 1.01135 1.24673 1.03972 0.89186 1.26957 0.95923 0.94551 1.01014 1.69784 1.12146 1.31039 1.29861 0.85107 0.78946 0.78212 0.76993 1.18815 1.19216 1.17566 1.20931 0.95341 1.08056 1.01907 1.20641 0.97446 0.94079 0.93555 0.91602 0.88103 0.91762 0.90968 0.87845 0.90079 0.90578 0.90589 0.90229 0.92950 0.90633 0.91378 0.75285 0.88748 0.87674 0.89474 0.86740 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 10.46 127.77 1.34 2.51 16 2 N -0.61 -12.08 3.22 -871.88 -2.81 -14.89 16 3 C 0.05 0.72 8.65 127.77 1.11 1.83 16 4 C 0.52 13.80 6.50 87.66 0.57 14.37 16 5 O -0.56 -18.25 15.53 -3.02 -0.05 -18.30 16 6 C 0.16 4.59 0.63 2.86 0.00 4.59 16 7 C -0.16 -4.25 8.13 71.98 0.59 -3.67 16 8 C -0.14 -4.33 7.79 71.98 0.56 -3.77 16 9 N -0.71 -21.01 3.12 -429.34 -1.34 -22.35 16 10 C 0.58 22.04 7.18 86.73 0.62 22.67 16 11 O -0.58 -24.90 12.53 -4.00 -0.05 -24.95 16 12 C -0.29 -12.13 5.89 -19.93 -0.12 -12.25 16 13 C -0.05 -2.23 9.52 22.25 0.21 -2.02 16 14 C -0.20 -10.27 8.63 22.47 0.19 -10.07 16 15 C 0.10 5.00 5.58 -21.28 -0.12 4.89 16 16 C -0.47 -23.02 9.06 23.46 0.21 -22.81 16 17 H 0.09 4.12 7.89 -2.91 -0.02 4.10 16 18 C 0.03 1.56 5.20 85.35 0.44 2.00 16 19 N -0.80 -39.13 10.82 21.87 0.24 -38.89 16 20 Si 0.99 34.61 29.59 68.60 2.03 36.64 16 21 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 22 H -0.27 -8.98 7.11 99.48 0.71 -8.27 16 23 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 24 C -0.24 -10.46 9.73 22.47 0.22 -10.24 16 25 C -0.04 -1.46 9.47 22.25 0.21 -1.25 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 0.92 8.07 -2.39 -0.02 0.90 16 28 H 0.06 1.17 7.35 -2.39 -0.02 1.15 16 29 H 0.07 1.03 7.04 -2.39 -0.02 1.01 16 30 H 0.10 1.12 8.04 -2.39 -0.02 1.10 16 31 H 0.08 1.63 4.11 -2.38 -0.01 1.62 16 32 H 0.08 2.39 5.98 -2.39 -0.01 2.38 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.77 5.31 -2.38 -0.01 1.76 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 2.13 7.99 -2.39 -0.02 2.11 16 37 H 0.07 2.32 6.36 -2.39 -0.02 2.30 16 38 H 0.41 10.40 4.99 -92.71 -0.46 9.94 16 39 H 0.09 4.52 7.63 -2.91 -0.02 4.49 16 40 H 0.11 5.64 6.09 -2.91 -0.02 5.62 16 41 H 0.29 12.87 8.29 -92.71 -0.77 12.10 16 42 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 43 H 0.13 3.72 6.37 -2.91 -0.02 3.70 16 Total: -1.00 -62.15 342.55 4.64 -57.51 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: 0.58 Total: 38.47 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 6.04 Total: -13.24 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -3.92 Total: -76.14 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.10 Total: -43.25 kcal Atomic # 14 Polarization: 34.61 SS G_CDS: 2.03 Total: 36.64 kcal Total: -62.15 4.64 -57.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536190403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.562 kcal (2) G-P(sol) polarization free energy of solvation -62.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds