Wall clock time and date at job start Tue Mar 31 2020 09:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.47218 * 2 1 4 4 H 1.09002 * 109.47612 * 305.02198 * 3 2 1 5 5 C 1.53092 * 109.47936 * 185.00187 * 3 2 1 6 6 C 1.53183 * 109.15852 * 182.40955 * 5 3 2 7 7 H 1.09004 * 109.53846 * 297.01845 * 6 5 3 8 8 C 1.50702 * 109.54266 * 176.84814 * 6 5 3 9 9 O 1.21277 * 119.99722 * 359.97438 * 8 6 5 10 10 N 1.34769 * 120.00042 * 179.97438 * 8 6 5 11 11 C 1.39477 * 120.00117 * 184.99989 * 10 8 6 12 12 C 1.38594 * 119.58143 * 174.58318 * 11 10 8 13 13 C 1.40811 * 118.79567 * 179.97438 * 12 11 10 14 14 C 1.41544 * 120.99507 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99711 * 151.68125 * 14 13 12 16 16 C 1.40027 * 119.99838 * 331.67513 * 14 13 12 17 17 N 1.30746 * 120.00498 * 350.16527 * 16 14 13 18 18 Si 1.86804 * 119.99789 * 170.16102 * 16 14 13 19 19 H 1.48497 * 109.47031 * 60.00454 * 18 16 14 20 20 H 1.48502 * 109.47185 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47119 * 300.00231 * 18 16 14 22 22 C 1.41174 * 118.00756 * 359.97438 * 13 12 11 23 23 C 1.37591 * 119.01392 * 359.97438 * 22 13 12 24 24 N 1.32085 * 121.10970 * 359.74565 * 23 22 13 25 25 C 1.53173 * 109.03896 * 56.97737 * 6 5 3 26 26 C 1.53094 * 109.16469 * 303.01997 * 25 6 5 27 27 O 1.42901 * 109.47927 * 65.05298 * 3 2 1 28 28 H 1.09003 * 109.46967 * 299.99944 * 1 2 3 29 29 H 1.09006 * 109.46899 * 60.00006 * 1 2 3 30 30 H 1.08997 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47468 * 240.00126 * 2 1 3 32 32 H 1.08995 * 109.47572 * 119.99760 * 2 1 3 33 33 H 1.08993 * 109.52205 * 62.50193 * 5 3 2 34 34 H 1.08996 * 109.51912 * 302.30712 * 5 3 2 35 35 H 0.97002 * 120.00200 * 5.00063 * 10 8 6 36 36 H 1.07996 * 120.59961 * 359.95429 * 12 11 10 37 37 H 0.96995 * 120.00160 * 180.02562 * 17 16 14 38 38 H 1.07991 * 120.49302 * 179.97438 * 22 13 12 39 39 H 1.08002 * 119.44407 * 180.02562 * 23 22 13 40 40 H 1.09003 * 109.52076 * 62.92663 * 25 6 5 41 41 H 1.08997 * 109.52205 * 183.11234 * 25 6 5 42 42 H 1.08996 * 109.47823 * 297.62275 * 26 25 6 43 43 H 1.08996 * 109.48897 * 177.59848 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6051 1.9818 -0.8416 5 6 3.5658 1.4446 -0.1258 6 6 4.0733 2.8886 -0.0645 7 1 3.6804 3.4495 -0.9126 8 6 5.5796 2.8958 -0.1098 9 8 6.1891 1.8499 -0.1834 10 7 6.2494 4.0646 -0.0686 11 6 7.6364 4.0791 -0.2154 12 6 8.3044 5.2914 -0.2847 13 6 9.7048 5.2868 -0.4323 14 6 10.4338 6.4977 -0.5075 15 1 11.4589 6.5326 -0.1694 16 6 9.8259 7.6501 -1.0204 17 7 8.6593 7.5690 -1.6050 18 14 10.6819 9.3036 -0.8694 19 1 11.9919 9.2484 -1.5666 20 1 9.8369 10.3568 -1.4874 21 1 10.8978 9.6200 0.5654 22 6 10.3599 4.0382 -0.5020 23 6 9.6113 2.8864 -0.4231 24 7 8.2991 2.9339 -0.2791 25 6 3.5969 3.5307 1.2420 26 6 2.0699 3.4480 1.3149 27 8 1.6631 2.0813 1.2215 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8533 0.9975 -1.0773 34 1 3.9995 0.8710 0.6932 35 1 5.7670 4.8957 0.0632 36 1 7.7608 6.2227 -0.2268 37 1 8.2384 8.3673 -1.9605 38 1 11.4326 3.9878 -0.6156 39 1 10.1053 1.9275 -0.4752 40 1 4.0313 2.9991 2.0887 41 1 3.9068 4.5753 1.2686 42 1 1.6355 4.0137 0.4908 43 1 1.7280 3.8651 2.2621 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540940835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:06 Heat of formation + Delta-G solvation = -65.881730 kcal Electronic energy + Delta-G solvation = -24616.554334 eV Core-core repulsion = 21046.889476 eV Total energy + Delta-G solvation = -3569.664858 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.29558 -39.02516 -37.69105 -34.39938 -34.22269 -33.75007 -33.50370 -30.55502 -29.93428 -28.72111 -26.08998 -25.91379 -23.83974 -22.44921 -21.95543 -21.25205 -20.50762 -19.38381 -17.69415 -17.09017 -16.57610 -15.90217 -15.78829 -15.24182 -14.97480 -14.66155 -14.23728 -14.07383 -13.88666 -13.82151 -13.74293 -13.43553 -13.02298 -12.75717 -12.60832 -12.21275 -11.97215 -11.89235 -11.47079 -11.39155 -11.25668 -11.23403 -11.04997 -10.93281 -10.72477 -10.42410 -10.31307 -10.18201 -9.76609 -9.75057 -9.40118 -9.22469 -7.98490 -7.75705 -7.05621 -6.78970 -4.65225 2.52039 2.78310 2.99180 3.02221 3.17070 3.42940 3.55110 3.67300 3.83778 4.49720 4.64542 4.69216 4.72908 4.79957 4.96206 4.97751 5.18102 5.23800 5.29205 5.38546 5.52279 5.57422 5.60761 5.64263 5.75505 5.79752 5.87172 5.96223 6.01649 6.05961 6.14894 6.28481 6.55715 6.62146 6.77219 6.92685 7.08986 7.12108 7.35140 7.43600 7.75320 7.91675 8.18957 8.39895 8.67470 8.72891 8.86848 9.64977 10.08584 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024759 B = 0.003039 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.627793 B = 9211.465277 C =10045.295402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.057 0.943 5 C -0.128 4.128 6 C -0.109 4.109 7 H 0.094 0.906 8 C 0.503 3.497 9 O -0.480 6.480 10 N -0.658 5.658 11 C 0.334 3.666 12 C -0.237 4.237 13 C 0.143 3.857 14 C -0.457 4.457 15 H 0.081 0.919 16 C 0.076 3.924 17 N -0.797 5.797 18 Si 0.915 3.085 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.281 4.281 23 C 0.117 3.883 24 N -0.552 5.552 25 C -0.149 4.149 26 C 0.065 3.935 27 O -0.378 6.378 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.406 0.594 36 H 0.129 0.871 37 H 0.281 0.719 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.432 -3.985 2.525 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.075 0.925 5 C -0.166 4.166 6 C -0.131 4.131 7 H 0.113 0.887 8 C 0.288 3.712 9 O -0.350 6.350 10 N -0.304 5.304 11 C 0.110 3.890 12 C -0.262 4.262 13 C 0.135 3.865 14 C -0.489 4.489 15 H 0.099 0.901 16 C -0.142 4.142 17 N -0.423 5.423 18 Si 0.739 3.261 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.304 4.304 23 C -0.038 4.038 24 N -0.271 5.271 25 C -0.187 4.187 26 C -0.011 4.011 27 O -0.297 6.297 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.241 0.759 36 H 0.147 0.853 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.141 0.859 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.809 -5.540 2.534 16.013 hybrid contribution 0.877 2.370 -0.342 2.550 sum -13.932 -3.170 2.192 14.455 Atomic orbital electron populations 1.21719 0.95376 1.01397 1.02137 1.21541 0.96444 0.94376 1.03020 1.22193 0.93515 0.94079 0.86912 0.92461 1.22027 0.94965 0.95188 1.04435 1.21414 0.93176 0.98909 0.99601 0.88749 1.20508 0.88992 0.84206 0.77531 1.90772 1.69109 1.30707 1.44366 1.43466 1.05819 1.09566 1.71515 1.18231 0.82698 0.90825 0.97280 1.21600 0.95871 0.95356 1.13398 1.17586 0.91152 0.92321 0.85441 1.19528 0.99458 0.92863 1.37028 0.90083 1.25934 0.94637 1.01142 0.92492 1.69738 1.14755 1.31223 1.26602 0.86261 0.80015 0.80117 0.79710 1.18911 1.20277 1.18783 1.21950 0.99471 0.93625 1.15403 1.21780 0.88931 0.96792 0.96275 1.67223 1.09258 1.27115 1.23515 1.22213 0.97275 1.01737 0.97452 1.22532 0.93144 0.83273 1.02192 1.87913 1.78491 1.24605 1.38738 0.91999 0.93033 0.92874 0.90504 0.90974 0.90187 0.90059 0.75893 0.85311 0.90768 0.87913 0.85857 0.90292 0.90259 0.93060 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.81 37.16 0.36 -0.87 16 2 C -0.12 -1.10 5.64 -26.73 -0.15 -1.25 16 3 C 0.09 0.97 2.64 -26.68 -0.07 0.90 16 4 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.13 -1.64 4.02 -26.59 -0.11 -1.75 16 6 C -0.11 -1.44 2.62 -91.59 -0.24 -1.68 16 7 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 8 C 0.50 9.37 7.11 -10.99 -0.08 9.29 16 9 O -0.48 -10.97 14.23 5.56 0.08 -10.89 16 10 N -0.66 -12.76 5.32 -11.49 -0.06 -12.82 16 11 C 0.33 8.09 7.41 -154.70 -1.15 6.95 16 12 C -0.24 -5.97 8.59 -38.48 -0.33 -6.31 16 13 C 0.14 3.76 5.58 -106.55 -0.59 3.17 16 14 C -0.46 -11.70 9.13 -37.65 -0.34 -12.05 16 15 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 16 C 0.08 1.82 5.30 -17.34 -0.09 1.73 16 17 N -0.80 -19.55 10.83 55.55 0.60 -18.95 16 18 Si 0.91 17.87 29.57 -169.99 -5.03 12.85 16 19 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 22 C -0.28 -6.90 9.90 -38.70 -0.38 -7.28 16 23 C 0.12 2.81 11.15 -17.68 -0.20 2.62 16 24 N -0.55 -14.15 7.85 -12.52 -0.10 -14.25 16 25 C -0.15 -1.65 5.29 -26.59 -0.14 -1.79 16 26 C 0.07 0.63 6.84 37.21 0.25 0.88 16 27 O -0.38 -4.34 9.94 -35.23 -0.35 -4.69 16 28 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.18 8.02 -51.93 -0.42 0.76 16 35 H 0.41 6.45 8.08 -40.82 -0.33 6.12 16 36 H 0.13 3.21 6.27 -52.49 -0.33 2.89 16 37 H 0.28 6.27 8.29 -40.82 -0.34 5.94 16 38 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 39 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 0.77 7.59 -51.93 -0.39 0.37 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 351.59 15.07 5.30 5.30 Total: -1.00 -31.24 351.59 -9.31 -40.55 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -6.50 Total: 10.36 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.26 Total: -7.44 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.44 Total: -46.02 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.27 Total: -15.59 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.24 -9.31 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540940835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.337 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds