Wall clock time and date at job start Tue Mar 31 2020 09:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.47218 * 2 1 4 4 H 1.09002 * 109.47612 * 305.02198 * 3 2 1 5 5 C 1.53092 * 109.47936 * 185.00187 * 3 2 1 6 6 C 1.53183 * 109.15852 * 182.40955 * 5 3 2 7 7 H 1.09004 * 109.53846 * 297.01845 * 6 5 3 8 8 C 1.50702 * 109.54266 * 176.84814 * 6 5 3 9 9 O 1.21277 * 119.99722 * 359.97438 * 8 6 5 10 10 N 1.34769 * 120.00042 * 179.97438 * 8 6 5 11 11 C 1.39477 * 120.00117 * 184.99989 * 10 8 6 12 12 C 1.38594 * 119.58143 * 174.58318 * 11 10 8 13 13 C 1.40811 * 118.79567 * 179.97438 * 12 11 10 14 14 C 1.41544 * 120.99507 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99711 * 151.68125 * 14 13 12 16 16 C 1.40027 * 119.99838 * 331.67513 * 14 13 12 17 17 N 1.30746 * 120.00498 * 350.16527 * 16 14 13 18 18 Si 1.86804 * 119.99789 * 170.16102 * 16 14 13 19 19 H 1.48497 * 109.47031 * 60.00454 * 18 16 14 20 20 H 1.48502 * 109.47185 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47119 * 300.00231 * 18 16 14 22 22 C 1.41174 * 118.00756 * 359.97438 * 13 12 11 23 23 C 1.37591 * 119.01392 * 359.97438 * 22 13 12 24 24 N 1.32085 * 121.10970 * 359.74565 * 23 22 13 25 25 C 1.53173 * 109.03896 * 56.97737 * 6 5 3 26 26 C 1.53094 * 109.16469 * 303.01997 * 25 6 5 27 27 O 1.42901 * 109.47927 * 65.05298 * 3 2 1 28 28 H 1.09003 * 109.46967 * 299.99944 * 1 2 3 29 29 H 1.09006 * 109.46899 * 60.00006 * 1 2 3 30 30 H 1.08997 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47468 * 240.00126 * 2 1 3 32 32 H 1.08995 * 109.47572 * 119.99760 * 2 1 3 33 33 H 1.08993 * 109.52205 * 62.50193 * 5 3 2 34 34 H 1.08996 * 109.51912 * 302.30712 * 5 3 2 35 35 H 0.97002 * 120.00200 * 5.00063 * 10 8 6 36 36 H 1.07996 * 120.59961 * 359.95429 * 12 11 10 37 37 H 0.96995 * 120.00160 * 180.02562 * 17 16 14 38 38 H 1.07991 * 120.49302 * 179.97438 * 22 13 12 39 39 H 1.08002 * 119.44407 * 180.02562 * 23 22 13 40 40 H 1.09003 * 109.52076 * 62.92663 * 25 6 5 41 41 H 1.08997 * 109.52205 * 183.11234 * 25 6 5 42 42 H 1.08996 * 109.47823 * 297.62275 * 26 25 6 43 43 H 1.08996 * 109.48897 * 177.59848 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6051 1.9818 -0.8416 5 6 3.5658 1.4446 -0.1258 6 6 4.0733 2.8886 -0.0645 7 1 3.6804 3.4495 -0.9126 8 6 5.5796 2.8958 -0.1098 9 8 6.1891 1.8499 -0.1834 10 7 6.2494 4.0646 -0.0686 11 6 7.6364 4.0791 -0.2154 12 6 8.3044 5.2914 -0.2847 13 6 9.7048 5.2868 -0.4323 14 6 10.4338 6.4977 -0.5075 15 1 11.4589 6.5326 -0.1694 16 6 9.8259 7.6501 -1.0204 17 7 8.6593 7.5690 -1.6050 18 14 10.6819 9.3036 -0.8694 19 1 11.9919 9.2484 -1.5666 20 1 9.8369 10.3568 -1.4874 21 1 10.8978 9.6200 0.5654 22 6 10.3599 4.0382 -0.5020 23 6 9.6113 2.8864 -0.4231 24 7 8.2991 2.9339 -0.2791 25 6 3.5969 3.5307 1.2420 26 6 2.0699 3.4480 1.3149 27 8 1.6631 2.0813 1.2215 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8533 0.9975 -1.0773 34 1 3.9995 0.8710 0.6932 35 1 5.7670 4.8957 0.0632 36 1 7.7608 6.2227 -0.2268 37 1 8.2384 8.3673 -1.9605 38 1 11.4326 3.9878 -0.6156 39 1 10.1053 1.9275 -0.4752 40 1 4.0313 2.9991 2.0887 41 1 3.9068 4.5753 1.2686 42 1 1.6355 4.0137 0.4908 43 1 1.7280 3.8651 2.2621 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540940835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:05 Heat of formation + Delta-G solvation = -84.091821 kcal Electronic energy + Delta-G solvation = -24617.343983 eV Core-core repulsion = 21046.889476 eV Total energy + Delta-G solvation = -3570.454507 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.63078 -40.39110 -39.28241 -36.15292 -35.57790 -34.93080 -34.62214 -32.46189 -30.78883 -30.45733 -27.93220 -27.04127 -24.75735 -23.91285 -23.61658 -22.46101 -21.66012 -20.81019 -19.48497 -18.52168 -17.56967 -17.32986 -17.08924 -16.81961 -16.25782 -16.08746 -15.70321 -15.56514 -15.30017 -15.03894 -14.62664 -14.54689 -14.40702 -14.33001 -14.11747 -13.73085 -13.19847 -12.88799 -12.77754 -12.72016 -12.68938 -12.37024 -12.14718 -12.08613 -11.93391 -11.78558 -11.62733 -11.50086 -11.32879 -11.18221 -10.96509 -10.44595 -9.92826 -9.61777 -8.89066 -8.61418 -6.59376 0.70702 0.98390 1.41037 1.51997 1.54706 1.84255 2.09584 2.20257 2.81181 2.86547 3.46594 3.55442 3.68882 3.77207 3.92036 4.07499 4.13820 4.19084 4.37352 4.43131 4.45220 4.53148 4.69764 4.73109 4.73441 4.81807 4.83857 4.89625 4.91691 5.06260 5.06630 5.11414 5.14934 5.19509 5.21970 5.32105 5.45019 5.48149 5.62094 5.90220 6.12280 6.32411 6.45590 6.57392 6.77107 6.82473 7.27790 7.80190 8.29005 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024759 B = 0.003039 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.627793 B = 9211.465277 C =10045.295402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C 0.096 3.904 4 H 0.075 0.925 5 C -0.125 4.125 6 C -0.098 4.098 7 H 0.122 0.878 8 C 0.499 3.501 9 O -0.526 6.526 10 N -0.651 5.651 11 C 0.331 3.669 12 C -0.253 4.253 13 C 0.113 3.887 14 C -0.486 4.486 15 H 0.083 0.917 16 C 0.037 3.963 17 N -0.819 5.819 18 Si 0.990 3.010 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.259 1.259 22 C -0.295 4.295 23 C 0.110 3.890 24 N -0.578 5.578 25 C -0.145 4.145 26 C 0.065 3.935 27 O -0.392 6.392 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.422 0.578 36 H 0.127 0.873 37 H 0.292 0.708 38 H 0.117 0.883 39 H 0.149 0.851 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.949 -2.403 2.264 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C 0.039 3.961 4 H 0.093 0.907 5 C -0.163 4.163 6 C -0.119 4.119 7 H 0.139 0.861 8 C 0.287 3.713 9 O -0.399 6.399 10 N -0.298 5.298 11 C 0.105 3.895 12 C -0.278 4.278 13 C 0.105 3.895 14 C -0.517 4.517 15 H 0.101 0.899 16 C -0.179 4.179 17 N -0.445 5.445 18 Si 0.810 3.190 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.183 1.183 22 C -0.318 4.318 23 C -0.043 4.043 24 N -0.298 5.298 25 C -0.183 4.183 26 C -0.011 4.011 27 O -0.312 6.312 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.260 0.740 36 H 0.145 0.855 37 H 0.102 0.898 38 H 0.135 0.865 39 H 0.166 0.834 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.365 -3.952 2.280 16.989 hybrid contribution 1.350 1.839 -0.274 2.298 sum -15.015 -2.113 2.006 15.295 Atomic orbital electron populations 1.21677 0.94216 1.02094 1.02158 1.21577 0.97415 0.93696 1.02908 1.22205 0.91529 0.95044 0.87367 0.90676 1.22006 0.96806 0.94497 1.03030 1.21436 0.88593 0.99922 1.01939 0.86065 1.21529 0.91168 0.83013 0.75620 1.90743 1.70659 1.32227 1.46304 1.43511 1.04209 1.10973 1.71076 1.18499 0.84632 0.90253 0.96142 1.21587 0.95851 0.95584 1.14811 1.18034 0.92086 0.93356 0.86010 1.19824 0.99927 0.93782 1.38171 0.89860 1.26805 0.95261 1.04407 0.91405 1.69777 1.15753 1.32806 1.26173 0.85134 0.78859 0.75215 0.79804 1.18612 1.18975 1.18332 1.22135 1.00268 0.93449 1.15985 1.22224 0.88849 0.97873 0.95389 1.67351 1.09983 1.27819 1.24663 1.22235 0.98719 1.02160 0.95199 1.22696 0.91526 0.82718 1.04155 1.87913 1.78407 1.25705 1.39142 0.92762 0.92133 0.91922 0.89723 0.92105 0.90899 0.92596 0.74020 0.85548 0.89754 0.86542 0.83354 0.92255 0.88521 0.90883 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.81 71.98 0.71 -1.41 16 2 C -0.12 -2.09 5.64 30.60 0.17 -1.92 16 3 C 0.10 1.88 2.64 30.63 0.08 1.96 16 4 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 5 C -0.13 -3.15 4.02 30.69 0.12 -3.03 16 6 C -0.10 -2.45 2.62 -11.42 -0.03 -2.48 16 7 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 8 C 0.50 18.67 7.11 87.66 0.62 19.29 16 9 O -0.53 -24.73 14.23 -3.02 -0.04 -24.77 16 10 N -0.65 -25.28 5.32 -308.66 -1.64 -26.92 16 11 C 0.33 16.30 7.41 132.75 0.98 17.28 16 12 C -0.25 -13.02 8.59 22.98 0.20 -12.82 16 13 C 0.11 6.08 5.58 -21.11 -0.12 5.96 16 14 C -0.49 -25.13 9.13 23.52 0.21 -24.91 16 15 H 0.08 4.11 7.87 -2.91 -0.02 4.09 16 16 C 0.04 1.78 5.30 85.29 0.45 2.23 16 17 N -0.82 -39.88 10.83 21.84 0.24 -39.65 16 18 Si 0.99 35.70 29.57 68.60 2.03 37.73 16 19 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 20 H -0.27 -8.98 7.11 99.48 0.71 -8.28 16 21 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 22 C -0.29 -14.77 9.90 22.84 0.23 -14.54 16 23 C 0.11 5.42 11.15 84.50 0.94 6.36 16 24 N -0.58 -30.27 7.85 -193.53 -1.52 -31.79 16 25 C -0.15 -2.96 5.29 30.68 0.16 -2.80 16 26 C 0.07 1.06 6.84 72.01 0.49 1.55 16 27 O -0.39 -8.21 9.94 -148.98 -1.48 -9.69 16 28 H 0.05 0.88 7.82 -2.39 -0.02 0.86 16 29 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.68 8.02 -2.39 -0.02 1.66 16 35 H 0.42 13.11 8.08 -92.71 -0.75 12.37 16 36 H 0.13 6.42 6.27 -2.91 -0.02 6.40 16 37 H 0.29 12.70 8.29 -92.71 -0.77 11.93 16 38 H 0.12 5.32 8.06 -2.92 -0.02 5.30 16 39 H 0.15 6.29 8.06 -2.91 -0.02 6.26 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 41 H 0.10 1.63 7.59 -2.39 -0.02 1.62 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -68.85 351.59 3.07 -65.78 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: 0.26 Total: 38.58 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 5.23 Total: -9.27 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -2.93 Total: -98.35 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.52 Total: -34.46 kcal Atomic # 14 Polarization: 35.70 SS G_CDS: 2.03 Total: 37.73 kcal Total: -68.85 3.07 -65.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540940835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.313 kcal (2) G-P(sol) polarization free energy of solvation -68.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds