Wall clock time and date at job start Tue Mar 31 2020 09:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47176 * 2 1 4 4 H 1.08998 * 109.49349 * 55.02752 * 3 2 1 5 5 C 1.53098 * 109.47660 * 175.05945 * 3 2 1 6 6 C 1.53181 * 109.15964 * 177.58816 * 5 3 2 7 7 H 1.09002 * 109.54332 * 62.88336 * 6 5 3 8 8 C 1.50697 * 109.54393 * 183.14785 * 6 5 3 9 9 O 1.21280 * 119.99712 * 359.56085 * 8 6 5 10 10 N 1.34767 * 120.00295 * 179.55741 * 8 6 5 11 11 C 1.39470 * 120.00223 * 175.17485 * 10 8 6 12 12 C 1.38597 * 119.58111 * 185.23074 * 11 10 8 13 13 C 1.40810 * 118.79529 * 179.97438 * 12 11 10 14 14 C 1.41541 * 120.99381 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99755 * 149.49785 * 14 13 12 16 16 C 1.40031 * 120.00513 * 329.49775 * 14 13 12 17 17 N 1.30741 * 120.00523 * 167.66501 * 16 14 13 18 18 Si 1.86804 * 119.99545 * 347.66215 * 16 14 13 19 19 H 1.48495 * 109.46976 * 92.45167 * 18 16 14 20 20 H 1.48497 * 109.47079 * 212.45056 * 18 16 14 21 21 H 1.48496 * 109.47127 * 332.45020 * 18 16 14 22 22 C 1.41175 * 118.01086 * 359.97438 * 13 12 11 23 23 C 1.37594 * 119.01173 * 0.02562 * 22 13 12 24 24 N 1.32086 * 121.10694 * 359.73495 * 23 22 13 25 25 C 1.53177 * 109.03825 * 303.01821 * 6 5 3 26 26 C 1.53088 * 109.16354 * 56.98064 * 25 6 5 27 27 O 1.42900 * 109.41609 * 302.39238 * 26 25 6 28 28 H 1.09002 * 109.47135 * 300.00730 * 1 2 3 29 29 H 1.09006 * 109.46941 * 60.00255 * 1 2 3 30 30 H 1.08999 * 109.47801 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46727 * 239.99293 * 2 1 3 32 32 H 1.08997 * 109.46961 * 119.99986 * 2 1 3 33 33 H 1.08995 * 109.52190 * 57.68513 * 5 3 2 34 34 H 1.08996 * 109.51801 * 297.48960 * 5 3 2 35 35 H 0.97003 * 120.00557 * 355.16991 * 10 8 6 36 36 H 1.08002 * 120.60291 * 0.02562 * 12 11 10 37 37 H 0.96998 * 119.99947 * 180.02562 * 17 16 14 38 38 H 1.07998 * 120.49356 * 180.02562 * 22 13 12 39 39 H 1.07993 * 119.44563 * 179.97438 * 23 22 13 40 40 H 1.08995 * 109.52096 * 297.07402 * 25 6 5 41 41 H 1.09000 * 109.52128 * 176.88861 * 25 6 5 42 42 H 1.09004 * 109.48051 * 182.41198 * 26 25 6 43 43 H 1.09000 * 109.48998 * 62.37967 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6060 1.9817 0.8420 5 6 3.5659 1.4444 0.1243 6 6 4.0735 2.8884 0.0629 7 1 3.6801 3.4495 0.9106 8 6 5.5798 2.8955 0.1068 9 8 6.1890 1.8500 0.1880 10 7 6.2500 4.0636 0.0558 11 6 7.6374 4.0785 0.1976 12 6 8.3065 5.2910 0.2529 13 6 9.7072 5.2867 0.3968 14 6 10.4374 6.4977 0.4579 15 1 11.3529 6.5480 1.0286 16 6 9.9728 7.6305 -0.2216 17 7 10.5009 8.8014 0.0220 18 14 8.5983 7.4687 -1.4763 19 1 7.2912 7.7014 -0.8113 20 1 8.7911 8.4721 -2.5539 21 1 8.6202 6.1039 -2.0611 22 6 10.3615 4.0384 0.4783 23 6 9.6117 2.8865 0.4140 24 7 8.2982 2.9337 0.2833 25 6 3.5958 3.5308 -1.2429 26 6 2.0689 3.4483 -1.3145 27 8 1.6621 2.0816 -1.2211 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3635 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9988 0.8710 -0.6953 34 1 3.8544 0.9970 1.0754 35 1 5.7675 4.8942 -0.0796 36 1 7.7634 6.2222 0.1877 37 1 10.1788 9.5861 -0.4485 38 1 11.4346 3.9883 0.5895 39 1 10.1051 1.9278 0.4752 40 1 4.0295 2.9996 -2.0901 41 1 3.9058 4.5755 -1.2696 42 1 1.7262 3.8656 -2.2614 43 1 1.6351 4.0138 -0.4898 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540940838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:17 Heat of formation + Delta-G solvation = -62.753417 kcal Electronic energy + Delta-G solvation = -24791.754584 eV Core-core repulsion = 21222.225380 eV Total energy + Delta-G solvation = -3569.529204 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.46329 -39.23789 -37.93423 -34.53424 -34.27380 -33.85980 -33.61486 -31.35002 -30.02058 -29.05038 -26.25205 -25.91268 -23.93133 -22.52442 -22.43463 -21.31023 -20.54950 -19.57378 -17.80020 -17.34767 -16.66576 -16.10873 -15.99982 -15.52342 -15.13403 -14.80293 -14.51325 -14.23751 -14.02777 -13.91311 -13.84020 -13.56075 -13.17235 -13.02383 -12.97950 -12.49027 -12.05456 -11.98557 -11.64352 -11.51096 -11.34617 -11.11938 -11.02653 -10.90951 -10.80945 -10.72300 -10.50449 -10.08877 -9.93775 -9.80220 -9.52982 -9.30901 -8.27484 -7.92014 -7.30843 -7.08318 -4.77997 2.22639 2.57709 2.93494 3.03530 3.18160 3.26005 3.34400 3.57413 3.84005 4.39118 4.51790 4.54227 4.61585 4.70122 4.87983 4.89469 5.10438 5.14401 5.18155 5.25912 5.35965 5.42157 5.49183 5.51722 5.64252 5.72733 5.75246 5.82919 5.89485 5.95590 6.08351 6.18366 6.25528 6.32266 6.35658 6.51397 6.91454 7.04139 7.06975 7.19792 7.52687 7.68661 7.97622 8.16806 8.37253 8.60897 8.62932 9.39245 9.93268 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.003456 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.818690 B = 8099.751242 C = 9050.997679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.058 0.942 5 C -0.128 4.128 6 C -0.109 4.109 7 H 0.096 0.904 8 C 0.505 3.495 9 O -0.473 6.473 10 N -0.664 5.664 11 C 0.368 3.632 12 C -0.320 4.320 13 C 0.128 3.872 14 C -0.437 4.437 15 H 0.096 0.904 16 C 0.084 3.916 17 N -0.803 5.803 18 Si 0.918 3.082 19 H -0.271 1.271 20 H -0.291 1.291 21 H -0.245 1.245 22 C -0.270 4.270 23 C 0.128 3.872 24 N -0.554 5.554 25 C -0.151 4.151 26 C 0.066 3.934 27 O -0.377 6.377 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.406 0.594 36 H 0.108 0.892 37 H 0.288 0.712 38 H 0.111 0.889 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.821 -7.481 -1.544 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.076 0.924 5 C -0.166 4.166 6 C -0.131 4.131 7 H 0.114 0.886 8 C 0.289 3.711 9 O -0.342 6.342 10 N -0.310 5.310 11 C 0.141 3.859 12 C -0.345 4.345 13 C 0.119 3.881 14 C -0.468 4.468 15 H 0.114 0.886 16 C -0.136 4.136 17 N -0.428 5.428 18 Si 0.745 3.255 19 H -0.198 1.198 20 H -0.218 1.218 21 H -0.168 1.168 22 C -0.293 4.293 23 C -0.025 4.025 24 N -0.274 5.274 25 C -0.189 4.189 26 C -0.011 4.011 27 O -0.297 6.297 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.241 0.759 36 H 0.126 0.874 37 H 0.098 0.902 38 H 0.129 0.871 39 H 0.148 0.852 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.933 -8.915 -1.660 20.095 hybrid contribution 0.010 1.801 -0.280 1.822 sum -17.922 -7.115 -1.940 19.380 Atomic orbital electron populations 1.21720 0.95327 1.01449 1.02152 1.21537 0.96498 0.94295 1.03047 1.22196 0.93401 0.94162 0.86950 0.92416 1.22038 0.95097 0.94984 1.04522 1.21425 0.92799 0.99156 0.99735 0.88586 1.20559 0.89135 0.84019 0.77351 1.90786 1.69116 1.30561 1.43713 1.43569 1.05715 1.09963 1.71704 1.18026 0.82698 0.90436 0.94787 1.21244 0.95420 0.95164 1.22680 1.17709 0.90308 0.93515 0.86560 1.19506 1.08834 0.91641 1.26778 0.88634 1.26184 0.96491 0.94072 0.96852 1.69608 1.38060 0.99632 1.35473 0.86228 0.79967 0.79676 0.79646 1.19750 1.21830 1.16822 1.21934 0.99552 0.92966 1.14891 1.21923 0.88716 0.97103 0.94709 1.67325 1.09445 1.26407 1.24206 1.22236 0.97492 1.01686 0.97463 1.22528 0.92968 0.83334 1.02286 1.87923 1.78424 1.24544 1.38766 0.93028 0.91981 0.92831 0.90951 0.90478 0.89995 0.90089 0.75898 0.87449 0.90179 0.87114 0.85211 0.90174 0.90334 0.88530 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.81 37.16 0.36 -0.80 16 2 C -0.12 -1.02 5.64 -26.73 -0.15 -1.17 16 3 C 0.09 0.90 2.64 -26.68 -0.07 0.83 16 4 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 5 C -0.13 -1.52 4.01 -26.59 -0.11 -1.63 16 6 C -0.11 -1.33 2.62 -91.59 -0.24 -1.57 16 7 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 8 C 0.50 8.78 7.12 -10.99 -0.08 8.70 16 9 O -0.47 -10.16 14.23 5.56 0.08 -10.08 16 10 N -0.66 -12.08 5.32 -11.49 -0.06 -12.14 16 11 C 0.37 8.37 7.42 -154.70 -1.15 7.22 16 12 C -0.32 -7.54 6.94 -38.48 -0.27 -7.80 16 13 C 0.13 3.19 5.17 -106.55 -0.55 2.64 16 14 C -0.44 -11.45 9.67 -37.65 -0.36 -11.81 16 15 H 0.10 2.61 8.06 -52.49 -0.42 2.18 16 16 C 0.08 2.12 5.48 -17.34 -0.10 2.03 16 17 N -0.80 -20.57 13.92 55.55 0.77 -19.80 16 18 Si 0.92 19.91 24.43 -169.99 -4.15 15.76 16 19 H -0.27 -5.47 6.67 56.52 0.38 -5.09 16 20 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.24 -5.58 6.66 56.52 0.38 -5.21 16 22 C -0.27 -6.27 9.90 -38.70 -0.38 -6.65 16 23 C 0.13 2.88 11.15 -17.68 -0.20 2.68 16 24 N -0.55 -13.37 7.85 -12.52 -0.10 -13.46 16 25 C -0.15 -1.56 5.29 -26.59 -0.14 -1.70 16 26 C 0.07 0.59 6.84 37.20 0.25 0.84 16 27 O -0.38 -4.09 9.94 -35.23 -0.35 -4.44 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.41 5.96 8.06 -40.82 -0.33 5.63 16 36 H 0.11 2.42 4.43 -52.49 -0.23 2.18 16 37 H 0.29 6.64 8.29 -40.82 -0.34 6.30 16 38 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 39 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.70 7.57 -51.93 -0.39 0.31 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -31.13 345.61 -8.23 -39.36 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.46 Total: 7.81 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -3.17 Total: -8.21 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.61 Total: -45.40 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.27 Total: -14.52 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.15 Total: 15.76 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.13 -8.23 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540940838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.390 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds